Wall clock time and date at job start Mon Mar 30 2020 07:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46685 * 2 1 4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.47216 * 300.00210 * 3 2 1 6 6 C 1.42900 * 114.00014 * 299.99773 * 5 3 2 7 7 C 1.50703 * 109.46991 * 60.00309 * 3 2 1 8 8 N 1.29949 * 126.28797 * 4.97397 * 7 3 2 9 9 O 1.21293 * 110.24947 * 180.02562 * 8 7 3 10 10 C 1.33641 * 109.81377 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.54932 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47144 * 270.02034 * 11 10 9 13 13 H 1.08994 * 109.47405 * 305.00163 * 12 11 10 14 14 C 1.52996 * 109.47068 * 65.00484 * 12 11 10 15 15 C 1.50702 * 109.47159 * 185.00130 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 N 1.31122 * 106.89852 * 0.22838 * 10 9 8 24 24 H 1.09003 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47201 * 299.99652 * 1 2 3 26 26 H 1.08998 * 109.47145 * 60.00268 * 1 2 3 27 27 H 1.08998 * 109.47201 * 240.00348 * 2 1 3 28 28 H 1.08998 * 109.47145 * 119.99732 * 2 1 3 29 29 H 1.09002 * 109.47207 * 300.00339 * 4 3 2 30 30 H 1.08998 * 109.46981 * 60.00282 * 4 3 2 31 31 H 1.08998 * 109.47215 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46772 * 60.00436 * 6 5 3 33 33 H 1.08999 * 109.47158 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47325 * 300.00047 * 6 5 3 35 35 H 1.09009 * 109.47161 * 150.02311 * 11 10 9 36 36 H 1.09003 * 109.47679 * 30.02557 * 11 10 9 37 37 H 1.09003 * 109.46851 * 300.00074 * 14 12 11 38 38 H 1.09003 * 109.47532 * 60.00149 * 14 12 11 39 39 H 1.09001 * 109.47094 * 180.02562 * 14 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 8 1.5636 2.1162 -1.1667 6 6 1.9853 1.5200 -2.3950 7 6 1.5376 2.1529 1.2305 8 7 0.8636 1.6196 2.2052 9 8 0.6082 2.4557 3.0459 10 6 1.1107 3.6377 2.6765 11 6 1.0128 4.9329 3.4407 12 6 -0.2524 5.6811 3.0161 13 1 -0.2503 5.8139 1.9343 14 6 -1.4849 4.8738 3.4284 15 6 -0.2877 7.0297 3.6877 16 1 0.5125 7.3240 4.3507 17 6 -1.3384 7.8906 3.4508 18 7 -2.3126 7.5324 2.6432 19 14 -1.3782 9.5653 4.2772 20 1 -0.1791 10.3440 3.8758 21 1 -2.6039 10.2934 3.8614 22 1 -1.3837 9.3898 5.7518 23 7 1.7006 3.4563 1.5196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9330 0.9289 0.8908 30 1 3.9337 0.9288 -0.8891 31 1 3.9332 2.4703 0.0011 32 1 1.6208 0.4939 -2.4447 33 1 1.5828 2.0898 -3.2325 34 1 3.0741 1.5217 -2.4447 35 1 1.8873 5.5477 3.2273 36 1 0.9689 4.7220 4.5092 37 1 -1.4594 3.8983 2.9427 38 1 -1.4871 4.7410 4.5104 39 1 -2.3863 5.4066 3.1256 40 1 -3.0521 8.1379 2.4769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234027643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:52 Heat of formation + Delta-G solvation = 11.475378 kcal Electronic energy + Delta-G solvation = -21280.548885 eV Core-core repulsion = 18098.916904 eV Total energy + Delta-G solvation = -3181.631981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.11162 -39.33026 -35.71700 -35.15987 -33.68871 -32.13434 -30.43384 -30.25530 -27.31680 -26.56397 -25.20965 -24.39886 -23.31507 -22.39036 -20.24664 -19.41994 -17.67255 -17.59874 -16.29149 -15.96552 -15.74095 -15.51874 -14.62303 -14.28257 -13.65405 -13.53845 -13.35716 -13.23013 -12.82192 -12.66795 -12.30264 -11.97763 -11.77442 -11.67212 -11.46270 -11.30528 -11.20283 -11.04053 -10.92461 -10.79463 -10.67289 -10.48820 -10.19065 -9.94837 -9.87243 -9.64353 -9.08133 -8.94096 -8.37980 -6.02716 -4.11276 1.60819 2.58796 3.31680 3.35253 3.36920 3.40180 3.54709 3.98089 4.39607 4.42495 4.58917 4.91942 5.09921 5.15094 5.23977 5.28715 5.31812 5.38884 5.46853 5.53810 5.60044 5.73966 5.85388 5.99192 6.00760 6.06980 6.18848 6.23851 6.36422 6.51207 6.58181 6.86352 7.06573 7.07050 7.23934 7.66110 7.87646 8.06452 8.31908 8.63808 8.91029 9.54056 11.03508 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004356 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.677898 B = 6426.635776 C = 6561.534442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.212 3.788 4 C -0.172 4.172 5 O -0.362 6.362 6 C 0.025 3.975 7 C 0.177 3.823 8 N -0.384 5.384 9 O 0.070 5.930 10 C 0.216 3.784 11 C -0.026 4.026 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.140 4.140 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 N -0.480 5.480 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.004 0.996 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -13.598 -5.416 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.171 3.829 4 C -0.230 4.230 5 O -0.280 6.280 6 C -0.071 4.071 7 C -0.096 4.096 8 N -0.095 5.095 9 O 0.013 5.987 10 C -0.003 4.003 11 C -0.066 4.066 12 C 0.031 3.969 13 H 0.054 0.946 14 C -0.198 4.198 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.213 5.213 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.023 0.977 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.603 -14.084 -5.846 17.508 hybrid contribution -0.041 0.795 0.382 0.883 sum 8.562 -13.289 -5.464 16.726 Atomic orbital electron populations 1.21841 0.94386 1.01623 1.03430 1.22053 0.98149 0.94734 1.03018 1.19301 0.92976 0.89589 0.81015 1.22358 0.93700 1.04178 1.02807 1.88095 1.74010 1.53247 1.12612 1.22854 0.99423 0.98476 0.86348 1.24973 0.98612 0.88644 0.97367 1.74508 1.17685 1.15318 1.02031 1.85292 1.57827 1.16387 1.39194 1.29581 0.88642 0.91030 0.91084 1.20846 1.04175 0.83956 0.97575 1.18736 0.87289 0.93159 0.97761 0.94640 1.21879 1.03252 0.96168 0.98496 1.20982 1.07219 0.99231 1.28156 0.92184 1.24950 0.95474 0.98388 0.95016 1.69891 1.10395 1.36329 1.35861 0.86598 0.77410 0.83836 0.79786 1.20180 1.21322 1.20183 1.71908 1.23393 1.13911 1.12042 0.92719 0.91027 0.92423 0.90735 0.90389 0.91289 0.91059 0.90386 0.93660 0.89259 0.93564 0.88237 0.89237 0.97722 0.94940 0.89582 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.47 37.16 0.35 -1.73 16 2 C -0.14 -1.71 4.32 -26.73 -0.12 -1.82 16 3 C 0.21 3.07 0.78 -91.77 -0.07 3.00 16 4 C -0.17 -2.02 8.23 37.16 0.31 -1.72 16 5 O -0.36 -5.58 9.66 -35.23 -0.34 -5.92 16 6 C 0.03 0.26 10.21 101.05 1.03 1.29 16 7 C 0.18 3.22 6.31 -156.37 -0.99 2.23 16 8 N -0.38 -7.07 9.47 30.90 0.29 -6.78 16 9 O 0.07 1.35 10.75 18.11 0.19 1.55 16 10 C 0.22 4.25 6.92 -13.06 -0.09 4.16 16 11 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 12 C 0.05 1.22 2.29 -91.77 -0.21 1.01 16 13 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 14 C -0.14 -3.36 8.79 37.16 0.33 -3.04 16 15 C -0.52 -13.56 8.56 -34.44 -0.29 -13.85 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 18 N -0.89 -25.12 11.33 55.43 0.63 -24.49 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 N -0.48 -9.69 11.55 -9.87 -0.11 -9.80 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.15 5.69 -51.93 -0.30 0.86 16 26 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 27 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.40 6.42 -51.93 -0.33 0.06 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.40 6.42 -51.93 -0.33 0.07 16 35 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.00 0.09 6.93 -51.93 -0.36 -0.27 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.30 6.08 -51.93 -0.32 1.98 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -29.82 321.70 -5.57 -35.39 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.06 Total: -0.98 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.01 Total: -9.50 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.81 Total: -41.07 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.15 Total: -4.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.82 -5.57 -35.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234027643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.861 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds