Wall clock time and date at job start Mon Mar 30 2020 07:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46685 * 2 1 4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.47216 * 300.00210 * 3 2 1 6 6 C 1.42900 * 114.00014 * 299.99773 * 5 3 2 7 7 C 1.50703 * 109.46991 * 60.00309 * 3 2 1 8 8 N 1.29949 * 126.28797 * 4.97397 * 7 3 2 9 9 O 1.21293 * 110.24947 * 180.02562 * 8 7 3 10 10 C 1.33641 * 109.81377 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.54932 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47144 * 270.02034 * 11 10 9 13 13 H 1.08994 * 109.47405 * 305.00163 * 12 11 10 14 14 C 1.52996 * 109.47068 * 65.00484 * 12 11 10 15 15 C 1.50702 * 109.47159 * 185.00130 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 N 1.31122 * 106.89852 * 0.22838 * 10 9 8 24 24 H 1.09003 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47201 * 299.99652 * 1 2 3 26 26 H 1.08998 * 109.47145 * 60.00268 * 1 2 3 27 27 H 1.08998 * 109.47201 * 240.00348 * 2 1 3 28 28 H 1.08998 * 109.47145 * 119.99732 * 2 1 3 29 29 H 1.09002 * 109.47207 * 300.00339 * 4 3 2 30 30 H 1.08998 * 109.46981 * 60.00282 * 4 3 2 31 31 H 1.08998 * 109.47215 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46772 * 60.00436 * 6 5 3 33 33 H 1.08999 * 109.47158 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47325 * 300.00047 * 6 5 3 35 35 H 1.09009 * 109.47161 * 150.02311 * 11 10 9 36 36 H 1.09003 * 109.47679 * 30.02557 * 11 10 9 37 37 H 1.09003 * 109.46851 * 300.00074 * 14 12 11 38 38 H 1.09003 * 109.47532 * 60.00149 * 14 12 11 39 39 H 1.09001 * 109.47094 * 180.02562 * 14 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 8 1.5636 2.1162 -1.1667 6 6 1.9853 1.5200 -2.3950 7 6 1.5376 2.1529 1.2305 8 7 0.8636 1.6196 2.2052 9 8 0.6082 2.4557 3.0459 10 6 1.1107 3.6377 2.6765 11 6 1.0128 4.9329 3.4407 12 6 -0.2524 5.6811 3.0161 13 1 -0.2503 5.8139 1.9343 14 6 -1.4849 4.8738 3.4284 15 6 -0.2877 7.0297 3.6877 16 1 0.5125 7.3240 4.3507 17 6 -1.3384 7.8906 3.4508 18 7 -2.3126 7.5324 2.6432 19 14 -1.3782 9.5653 4.2772 20 1 -0.1791 10.3440 3.8758 21 1 -2.6039 10.2934 3.8614 22 1 -1.3837 9.3898 5.7518 23 7 1.7006 3.4563 1.5196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9330 0.9289 0.8908 30 1 3.9337 0.9288 -0.8891 31 1 3.9332 2.4703 0.0011 32 1 1.6208 0.4939 -2.4447 33 1 1.5828 2.0898 -3.2325 34 1 3.0741 1.5217 -2.4447 35 1 1.8873 5.5477 3.2273 36 1 0.9689 4.7220 4.5092 37 1 -1.4594 3.8983 2.9427 38 1 -1.4871 4.7410 4.5104 39 1 -2.3863 5.4066 3.1256 40 1 -3.0521 8.1379 2.4769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234027643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:51 Heat of formation + Delta-G solvation = -8.078047 kcal Electronic energy + Delta-G solvation = -21281.396785 eV Core-core repulsion = 18098.916904 eV Total energy + Delta-G solvation = -3182.479881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.57598 -40.36511 -37.46212 -36.61492 -35.02068 -33.80568 -32.09566 -31.24870 -28.29857 -28.18157 -27.24007 -25.61773 -24.46087 -23.85465 -21.88177 -20.81267 -19.12953 -18.96230 -18.24262 -17.22579 -16.78293 -16.55671 -16.48431 -15.70185 -15.21361 -14.82588 -14.67511 -14.34000 -14.28717 -13.81264 -13.50767 -13.29243 -13.09575 -13.08446 -12.89569 -12.80160 -12.73362 -12.53313 -12.34135 -12.17933 -12.12558 -11.98248 -11.84382 -11.72495 -11.55255 -10.94731 -10.71367 -10.57626 -10.43524 -8.07822 -6.23235 0.12316 1.15347 1.48976 1.50417 1.57624 1.88158 2.36626 2.47897 2.76919 3.22000 3.28876 3.55412 3.77943 4.06488 4.21350 4.31935 4.40068 4.44345 4.47717 4.49774 4.53903 4.60400 4.69889 4.75109 4.82517 4.87617 4.91051 4.95412 5.02311 5.09204 5.10559 5.13418 5.30430 5.35375 5.60950 5.84943 6.04966 6.13617 6.28492 6.87693 7.15397 7.46284 8.98070 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004356 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.677898 B = 6426.635776 C = 6561.534442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.204 3.796 4 C -0.167 4.167 5 O -0.399 6.399 6 C 0.018 3.982 7 C 0.174 3.826 8 N -0.385 5.385 9 O 0.063 5.937 10 C 0.210 3.790 11 C -0.015 4.015 12 C 0.050 3.950 13 H -0.008 1.008 14 C -0.128 4.128 15 C -0.529 4.529 16 H 0.073 0.927 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.265 1.265 23 N -0.502 5.502 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.008 0.992 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -14.573 -5.328 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.163 3.837 4 C -0.224 4.224 5 O -0.318 6.318 6 C -0.078 4.078 7 C -0.099 4.099 8 N -0.098 5.098 9 O 0.008 5.992 10 C -0.010 4.010 11 C -0.054 4.054 12 C 0.030 3.970 13 H 0.010 0.990 14 C -0.186 4.186 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.190 1.190 23 N -0.236 5.236 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.126 -15.069 -5.741 19.041 hybrid contribution -0.523 1.043 0.262 1.196 sum 9.602 -14.026 -5.479 17.859 Atomic orbital electron populations 1.21814 0.95666 1.02376 1.01358 1.22070 0.96930 0.93434 1.04878 1.19668 0.94472 0.90070 0.79531 1.22340 0.91620 1.03647 1.04830 1.88037 1.74930 1.54708 1.14156 1.23115 1.00791 0.99367 0.84492 1.25800 0.97598 0.88061 0.98439 1.74514 1.17889 1.15135 1.02226 1.85272 1.58009 1.16321 1.39620 1.29493 0.88997 0.91248 0.91214 1.20640 1.02093 0.83720 0.98951 1.18593 0.89666 0.93662 0.95033 0.98978 1.21707 1.01838 0.95810 0.99233 1.21410 1.07329 0.99967 1.28001 0.90877 1.25808 0.95220 1.02146 0.95636 1.70056 1.11075 1.37560 1.37433 0.85554 0.77246 0.79320 0.79190 1.19478 1.21685 1.18981 1.71910 1.24065 1.15331 1.12260 0.90537 0.94286 0.93225 0.87290 0.89953 0.90547 0.87730 0.92184 0.91797 0.88738 0.91659 0.87285 0.86675 0.97291 0.93546 0.92597 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.47 71.98 0.68 -3.26 16 2 C -0.14 -2.93 4.32 30.60 0.13 -2.80 16 3 C 0.20 5.60 0.78 -11.54 -0.01 5.59 16 4 C -0.17 -3.54 8.23 71.98 0.59 -2.94 16 5 O -0.40 -11.92 9.66 -148.98 -1.44 -13.36 16 6 C 0.02 0.32 10.21 113.37 1.16 1.48 16 7 C 0.17 6.29 6.31 138.46 0.87 7.16 16 8 N -0.39 -14.14 9.47 -60.34 -0.57 -14.71 16 9 O 0.06 2.42 10.75 74.86 0.80 3.23 16 10 C 0.21 8.30 6.92 88.38 0.61 8.91 16 11 C -0.02 -0.59 5.26 29.85 0.16 -0.44 16 12 C 0.05 2.48 2.29 -11.54 -0.03 2.45 16 13 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 14 C -0.13 -6.26 8.79 71.98 0.63 -5.62 16 15 C -0.53 -27.65 8.56 25.60 0.22 -27.43 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C 0.01 0.57 5.31 84.66 0.45 1.02 16 18 N -0.92 -53.49 11.33 21.45 0.24 -53.24 16 19 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 N -0.50 -20.45 11.55 -303.23 -3.50 -23.95 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.24 5.69 -2.39 -0.01 1.23 16 26 H 0.05 1.32 7.68 -2.39 -0.02 1.30 16 27 H 0.11 1.61 6.54 -2.39 -0.02 1.59 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.48 6.55 -2.39 -0.02 1.47 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 0.91 6.42 -2.39 -0.02 0.90 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 0.93 6.42 -2.39 -0.02 0.91 16 35 H 0.11 4.01 8.14 -2.38 -0.02 3.99 16 36 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.01 0.38 6.93 -2.39 -0.02 0.37 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 3.07 6.08 -2.39 -0.01 3.06 16 40 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -65.77 321.70 4.06 -61.71 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.03 Total: 11.85 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 5.47 Total: -15.89 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -3.83 Total: -91.91 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.63 Total: -10.14 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -65.77 4.06 -61.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234027643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.629 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds