Wall clock time and date at job start Mon Mar 30 2020 07:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 C 1.52995 * 109.47246 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46932 * 299.99780 * 3 2 1 6 6 C 1.42902 * 113.99923 * 299.99923 * 5 3 2 7 7 C 1.50701 * 109.47087 * 59.99337 * 3 2 1 8 8 N 1.29945 * 126.28975 * 4.97500 * 7 3 2 9 9 O 1.21301 * 110.25328 * 179.72353 * 8 7 3 10 10 C 1.33645 * 109.80751 * 0.47131 * 9 8 7 11 11 C 1.50706 * 126.55066 * 179.79541 * 10 9 8 12 12 H 1.09000 * 109.47318 * 179.68579 * 11 10 9 13 13 C 1.52997 * 109.47238 * 299.69369 * 11 10 9 14 14 C 1.53002 * 109.46925 * 59.69345 * 11 10 9 15 15 C 1.50696 * 109.47362 * 175.00269 * 14 11 10 16 16 H 1.07997 * 119.99549 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00373 * 179.97438 * 15 14 11 18 18 N 1.31521 * 119.99972 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00423 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46898 * 59.99749 * 19 17 15 21 21 H 1.48494 * 109.47413 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47090 * 300.00132 * 19 17 15 23 23 N 1.31129 * 106.89936 * 359.54058 * 10 9 8 24 24 H 1.08997 * 109.47763 * 300.00329 * 1 2 3 25 25 H 1.09002 * 109.46817 * 60.00677 * 1 2 3 26 26 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47360 * 239.99426 * 2 1 3 28 28 H 1.09002 * 109.46817 * 119.99322 * 2 1 3 29 29 H 1.08993 * 109.47281 * 300.00230 * 4 3 2 30 30 H 1.09008 * 109.46757 * 60.00139 * 4 3 2 31 31 H 1.09006 * 109.46860 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47276 * 180.02562 * 6 5 3 33 33 H 1.09007 * 109.47003 * 299.99914 * 6 5 3 34 34 H 1.09004 * 109.47269 * 59.99904 * 6 5 3 35 35 H 1.09001 * 109.46832 * 299.99686 * 13 11 10 36 36 H 1.09004 * 109.47261 * 59.99705 * 13 11 10 37 37 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 38 38 H 1.09009 * 109.47011 * 294.99790 * 14 11 10 39 39 H 1.08998 * 109.47000 * 54.99344 * 14 11 10 40 40 H 0.96995 * 120.00234 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 1.5637 2.1160 -1.1668 6 6 1.9854 1.5197 -2.3950 7 6 1.5375 2.1529 1.2304 8 7 0.8633 1.6198 2.2049 9 8 0.6130 2.4548 3.0485 10 6 1.1103 3.6380 2.6760 11 6 1.0127 4.9333 3.4402 12 1 1.5193 5.7222 2.8843 13 6 -0.4595 5.3055 3.6271 14 6 1.6749 4.7685 4.8096 15 6 1.6867 6.0949 5.5248 16 1 1.2645 6.9682 5.0498 17 6 2.2364 6.1937 6.7853 18 7 2.7501 5.1302 7.3639 19 14 2.2517 7.8380 7.6715 20 1 0.8575 8.3173 7.8495 21 1 2.8932 7.6779 9.0011 22 1 3.0160 8.8261 6.8684 23 7 1.7041 3.4555 1.5212 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9329 0.9288 0.8908 30 1 3.9336 0.9285 -0.8892 31 1 3.9333 2.4702 0.0002 32 1 1.5831 2.0895 -3.2326 33 1 3.0744 1.5213 -2.4447 34 1 1.6210 0.4936 -2.4447 35 1 -0.9312 5.4229 2.6514 36 1 -0.9661 4.5166 4.1830 37 1 -0.5301 6.2421 4.1802 38 1 1.1145 4.0429 5.3993 39 1 2.6983 4.4172 4.6784 40 1 3.1365 5.1995 8.2509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234027870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:05 Heat of formation + Delta-G solvation = -11.949131 kcal Electronic energy + Delta-G solvation = -21119.437768 eV Core-core repulsion = 17936.790024 eV Total energy + Delta-G solvation = -3182.647744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.62369 -40.38320 -37.54089 -36.64302 -34.95309 -34.15301 -32.02540 -31.26868 -28.99425 -28.18728 -26.27442 -25.62113 -24.46712 -24.39396 -22.35891 -20.51283 -19.12186 -18.75332 -18.56210 -17.23954 -16.79436 -16.50569 -16.50335 -16.12582 -15.21661 -14.80938 -14.41675 -14.34811 -14.31815 -13.89498 -13.73492 -13.34090 -13.18559 -13.05646 -12.87594 -12.82023 -12.75603 -12.60336 -12.36400 -12.28365 -12.11212 -12.07779 -11.89949 -11.72296 -11.56206 -11.26351 -10.77271 -10.60225 -10.52727 -8.16766 -6.27554 0.07147 1.10671 1.47703 1.50009 1.57357 1.82812 2.28150 2.45513 2.70379 3.18566 3.25422 3.53015 3.70644 4.00295 4.17141 4.22252 4.28179 4.31933 4.37827 4.46292 4.50172 4.57054 4.65247 4.70722 4.78779 4.83904 4.88867 4.94891 5.03328 5.06277 5.08521 5.11469 5.34295 5.36018 5.41566 5.58725 5.80580 6.10109 6.17458 6.85992 7.09103 7.41700 8.95586 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.004035 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.506825 B = 6938.118433 C = 6993.879986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.208 3.792 4 C -0.171 4.171 5 O -0.392 6.392 6 C 0.016 3.984 7 C 0.177 3.823 8 N -0.386 5.386 9 O 0.060 5.940 10 C 0.210 3.790 11 C 0.009 3.991 12 H 0.111 0.889 13 C -0.128 4.128 14 C 0.038 3.962 15 C -0.530 4.530 16 H 0.078 0.922 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.267 1.267 23 N -0.499 5.499 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.006 0.994 39 H -0.012 1.012 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -8.230 -17.400 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.167 3.833 4 C -0.229 4.229 5 O -0.311 6.311 6 C -0.079 4.079 7 C -0.097 4.097 8 N -0.098 5.098 9 O 0.006 5.994 10 C -0.009 4.009 11 C -0.011 4.011 12 H 0.129 0.871 13 C -0.186 4.186 14 C 0.000 4.000 15 C -0.568 4.568 16 H 0.096 0.904 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.192 1.192 23 N -0.232 5.232 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.024 0.976 39 H 0.006 0.994 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.472 -8.849 -17.598 19.852 hybrid contribution 0.405 0.545 1.044 1.246 sum -2.067 -8.304 -16.553 18.634 Atomic orbital electron populations 1.21801 0.95058 1.02483 1.01657 1.22082 0.97520 0.93364 1.04662 1.19574 0.93987 0.90112 0.79636 1.22373 0.92252 1.03620 1.04628 1.87995 1.74716 1.54533 1.13851 1.23141 1.00714 0.99520 0.84501 1.25811 0.97376 0.88155 0.98308 1.74556 1.18705 1.14974 1.01610 1.85273 1.58505 1.16298 1.39334 1.29562 0.89608 0.91401 0.90345 1.20147 1.00762 0.84986 0.95238 0.87124 1.21732 0.91426 1.03440 1.02010 1.19022 0.93874 0.97478 0.89614 1.21470 1.38722 0.95393 1.01204 0.90400 1.25938 0.94775 1.00307 0.98532 1.70108 1.40417 1.31177 1.15783 0.85488 0.78973 0.79313 0.77223 1.18674 1.21591 1.19178 1.71918 1.22719 1.15723 1.12864 0.94106 0.92452 0.90711 0.87176 0.90709 0.91396 0.87409 0.92193 0.88114 0.92056 0.91825 0.91546 0.92523 0.89589 0.97599 0.99405 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.47 71.98 0.68 -2.87 16 2 C -0.14 -2.97 4.32 30.59 0.13 -2.84 16 3 C 0.21 5.61 0.78 -11.54 -0.01 5.60 16 4 C -0.17 -3.91 8.23 71.98 0.59 -3.32 16 5 O -0.39 -10.41 9.66 -148.98 -1.44 -11.85 16 6 C 0.02 0.26 10.21 113.37 1.16 1.42 16 7 C 0.18 6.37 6.31 138.46 0.87 7.24 16 8 N -0.39 -14.60 9.47 -60.31 -0.57 -15.17 16 9 O 0.06 2.45 11.31 74.82 0.85 3.29 16 10 C 0.21 8.54 7.02 88.38 0.62 9.16 16 11 C 0.01 0.36 2.81 -11.54 -0.03 0.33 16 12 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 13 C -0.13 -4.39 8.99 71.98 0.65 -3.74 16 14 C 0.04 1.93 4.43 29.85 0.13 2.06 16 15 C -0.53 -27.99 8.41 25.60 0.22 -27.77 16 16 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 19 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 N -0.50 -19.98 11.55 -303.18 -3.50 -23.48 16 24 H 0.04 1.20 5.69 -2.39 -0.01 1.18 16 25 H 0.06 1.30 7.68 -2.39 -0.02 1.28 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 1.58 6.54 -2.39 -0.02 1.57 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 1.63 6.55 -2.38 -0.02 1.62 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 0.78 6.42 -2.38 -0.02 0.77 16 34 H 0.06 0.76 6.42 -2.38 -0.02 0.75 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 2.92 6.95 -2.39 -0.02 2.91 16 38 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -66.06 325.60 4.14 -61.91 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.03 Total: 10.29 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.47 Total: -14.12 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.79 Total: -93.95 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.59 Total: -8.56 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -66.06 4.14 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234027870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.963 kcal (2) G-P(sol) polarization free energy of solvation -66.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds