Wall clock time and date at job start Mon Mar 30 2020 07:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47533 * 2 1 4 4 C 1.52999 * 109.47397 * 182.05944 * 3 2 1 5 5 C 1.50709 * 109.46782 * 62.06178 * 3 2 1 6 6 H 1.07994 * 119.99512 * 235.93364 * 5 3 2 7 7 C 1.37877 * 120.00087 * 55.93766 * 5 3 2 8 8 N 1.31507 * 119.99980 * 208.75392 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 28.47065 * 7 5 3 10 10 H 1.48500 * 109.46942 * 180.27360 * 9 7 5 11 11 H 1.48492 * 109.47377 * 300.27750 * 9 7 5 12 12 H 1.48503 * 109.46941 * 60.27915 * 9 7 5 13 13 C 1.52999 * 109.47417 * 302.06414 * 3 2 1 14 14 C 1.50700 * 109.46777 * 299.99696 * 13 3 2 15 15 N 1.31133 * 126.55008 * 89.99928 * 14 13 3 16 16 C 1.34503 * 105.61145 * 180.02562 * 15 14 13 17 17 C 1.50698 * 126.28708 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.46949 * 89.99604 * 17 16 15 19 19 O 1.42900 * 109.46931 * 180.02562 * 18 17 16 20 20 C 1.42895 * 113.99917 * 180.02562 * 19 18 17 21 21 N 1.29942 * 107.42599 * 359.97438 * 16 15 14 22 22 O 1.21304 * 110.25236 * 359.71332 * 21 16 15 23 23 H 1.09002 * 109.46568 * 299.99719 * 1 2 3 24 24 H 1.08996 * 109.46877 * 59.99397 * 1 2 3 25 25 H 1.08992 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47267 * 240.00142 * 2 1 3 27 27 H 1.09003 * 109.47524 * 120.00644 * 2 1 3 28 28 H 1.09004 * 109.47258 * 307.01143 * 4 3 2 29 29 H 1.08997 * 109.47083 * 67.01413 * 4 3 2 30 30 H 1.09005 * 109.47231 * 187.01786 * 4 3 2 31 31 H 0.97006 * 120.00241 * 354.61724 * 8 7 5 32 32 H 1.08994 * 109.47148 * 59.99014 * 13 3 2 33 33 H 1.09000 * 109.47186 * 180.02562 * 13 3 2 34 34 H 1.08997 * 109.47218 * 210.00006 * 17 16 15 35 35 H 1.09004 * 109.47118 * 330.00136 * 17 16 15 36 36 H 1.08997 * 109.47488 * 300.00236 * 18 17 16 37 37 H 1.09004 * 109.46777 * 60.00322 * 18 17 16 38 38 H 1.09002 * 109.47294 * 59.99932 * 20 19 18 39 39 H 1.09005 * 109.47151 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47224 * 299.99897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5692 1.4427 -0.0518 5 6 1.5799 2.1379 1.2553 6 1 1.0115 3.0537 1.1878 7 6 1.8846 1.6051 2.4899 8 7 1.0854 1.8164 3.5127 9 14 3.4285 0.5764 2.7079 10 1 3.5234 0.1187 4.1174 11 1 3.3689 -0.6028 1.8074 12 1 4.6207 1.3958 2.3723 13 6 1.4882 2.1786 -1.2224 14 6 1.9483 1.4831 -2.4776 15 7 1.3270 0.5144 -3.1063 16 6 2.1032 0.2119 -4.1622 17 6 1.8241 -0.8438 -5.2009 18 6 1.0229 -0.2290 -6.3503 19 8 0.7578 -1.2302 -7.3349 20 6 0.0110 -0.7576 -8.4578 21 7 3.1373 0.9977 -4.1230 22 8 3.0647 1.7398 -3.1662 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9600 0.8144 0.7485 29 1 3.9001 1.0529 -1.0144 30 1 3.9368 2.4612 0.0736 31 1 0.3242 2.4103 3.4189 32 1 0.3989 2.1784 -1.1855 33 1 1.8520 3.2061 -1.2226 34 1 2.7667 -1.2351 -5.5835 35 1 1.2504 -1.6538 -4.7506 36 1 0.0803 0.1623 -5.9677 37 1 1.5966 0.5811 -6.8006 38 1 0.5642 0.0410 -8.9520 39 1 -0.1489 -1.5770 -9.1587 40 1 -0.9524 -0.3765 -8.1191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234118162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:22 Heat of formation + Delta-G solvation = 16.584861 kcal Electronic energy + Delta-G solvation = -21214.672991 eV Core-core repulsion = 18033.262574 eV Total energy + Delta-G solvation = -3181.410417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.27073 -38.26157 -37.44610 -35.78469 -33.22165 -31.91567 -30.90089 -29.57293 -27.47454 -26.88890 -24.73551 -24.27421 -22.95530 -22.36492 -21.14994 -19.03532 -17.85257 -17.13616 -16.69330 -16.54558 -16.19610 -15.29470 -14.91356 -14.45916 -14.16797 -13.66896 -13.45016 -13.32297 -12.71587 -12.56558 -12.33074 -12.17217 -11.83214 -11.66590 -11.61415 -11.36525 -11.22023 -11.08467 -10.77550 -10.68825 -10.60210 -10.10573 -9.96402 -9.84672 -9.65103 -9.50492 -9.07028 -8.77859 -8.05905 -6.57868 -4.11446 1.46979 2.45924 3.21633 3.33730 3.34820 3.40174 3.60783 4.10156 4.30690 4.42438 4.80040 4.83855 5.06541 5.08961 5.13051 5.14175 5.33548 5.38773 5.60030 5.68693 5.72122 5.85397 5.96664 6.09385 6.25146 6.28247 6.33966 6.42145 6.49099 6.59144 6.71944 6.81372 6.84926 7.01576 7.26302 7.33996 7.40992 8.06465 8.30068 8.47707 8.82925 9.51745 10.82525 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004490 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.540984 B = 6234.783770 C = 6447.933825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.057 3.943 4 C -0.156 4.156 5 C -0.605 4.605 6 H 0.062 0.938 7 C 0.046 3.954 8 N -0.887 5.887 9 Si 1.050 2.950 10 H -0.299 1.299 11 H -0.278 1.278 12 H -0.287 1.287 13 C -0.016 4.016 14 C 0.216 3.784 15 N -0.485 5.485 16 C 0.163 3.837 17 C -0.023 4.023 18 C 0.070 3.930 19 O -0.390 6.390 20 C 0.033 3.967 21 N -0.395 5.395 22 O 0.070 5.930 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.271 0.729 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -2.551 -16.938 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C 0.055 3.945 4 C -0.213 4.213 5 C -0.641 4.641 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.519 5.519 9 Si 0.883 3.117 10 H -0.227 1.227 11 H -0.206 1.206 12 H -0.214 1.214 13 C -0.055 4.055 14 C -0.003 4.003 15 N -0.219 5.219 16 C -0.110 4.110 17 C -0.061 4.061 18 C -0.008 4.008 19 O -0.309 6.309 20 C -0.064 4.064 21 N -0.105 5.105 22 O 0.013 5.987 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.829 -3.952 -16.473 16.961 hybrid contribution -0.817 1.274 -1.089 1.865 sum 0.012 -2.679 -17.563 17.766 Atomic orbital electron populations 1.21591 0.96216 0.99071 1.01923 1.21879 0.96473 0.97637 0.99414 1.18480 0.90937 0.92768 0.92319 1.22471 0.99082 1.01226 0.98516 1.21524 1.40137 1.12712 0.89769 0.92030 1.25565 1.00137 0.97840 0.92618 1.70882 1.13626 1.31690 1.35736 0.84176 0.76464 0.76671 0.74393 1.22658 1.20568 1.21409 1.20751 1.02392 0.98357 0.84013 1.29520 0.82285 0.92217 0.96242 1.71985 1.29409 1.14128 1.06362 1.25430 0.88988 0.99664 0.96956 1.19611 1.02299 0.93826 0.90405 1.22375 0.99097 0.90594 0.88692 1.87825 1.75111 1.36127 1.31834 1.22751 0.94883 1.00350 0.88393 1.74563 1.22788 1.06840 1.06343 1.85302 1.39518 1.45942 1.27974 0.91454 0.93608 0.95386 0.95346 0.92221 0.93827 0.95609 0.92268 0.91844 0.87527 0.89029 0.88561 0.87857 0.92428 0.92969 0.94023 0.89417 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.29 37.16 0.35 -2.33 16 2 C -0.12 -2.51 4.37 -26.73 -0.12 -2.63 16 3 C 0.06 1.23 0.30 -155.66 -0.05 1.18 16 4 C -0.16 -3.26 7.38 37.16 0.27 -2.98 16 5 C -0.60 -15.13 7.25 -34.44 -0.25 -15.38 16 6 H 0.06 1.63 7.99 -52.49 -0.42 1.21 16 7 C 0.05 1.24 5.11 -17.82 -0.09 1.15 16 8 N -0.89 -25.43 13.69 55.43 0.76 -24.67 16 9 Si 1.05 24.82 23.37 -169.99 -3.97 20.85 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.28 -6.22 5.53 56.52 0.31 -5.91 16 12 H -0.29 -6.43 6.85 56.52 0.39 -6.04 16 13 C -0.02 -0.30 4.45 -27.88 -0.12 -0.42 16 14 C 0.22 3.86 5.75 -13.05 -0.08 3.78 16 15 N -0.49 -8.59 10.86 -9.87 -0.11 -8.70 16 16 C 0.16 2.63 7.47 -156.37 -1.17 1.46 16 17 C -0.02 -0.29 6.21 -27.88 -0.17 -0.46 16 18 C 0.07 0.81 5.92 37.16 0.22 1.03 16 19 O -0.39 -4.44 10.70 -35.23 -0.38 -4.81 16 20 C 0.03 0.26 11.01 101.05 1.11 1.37 16 21 N -0.39 -6.80 12.16 30.90 0.38 -6.42 16 22 O 0.07 1.23 10.50 18.09 0.19 1.42 16 23 H 0.07 1.52 7.28 -51.93 -0.38 1.14 16 24 H 0.04 0.87 6.39 -51.93 -0.33 0.54 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.59 6.80 -51.93 -0.35 0.24 16 27 H 0.06 1.38 4.53 -51.93 -0.24 1.15 16 28 H 0.04 0.94 2.80 -51.93 -0.15 0.80 16 29 H 0.02 0.49 6.37 -51.93 -0.33 0.16 16 30 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.27 7.67 8.73 -40.82 -0.36 7.32 16 32 H 0.11 1.92 6.39 -51.93 -0.33 1.59 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -28.17 313.97 -4.50 -32.67 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.01 Total: -0.83 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.09 Total: -14.23 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 1.03 Total: -39.79 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.19 Total: -3.39 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -3.97 Total: 20.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.17 -4.50 -32.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234118162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.258 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds