Wall clock time and date at job start Mon Mar 30 2020 07:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47533 * 2 1 4 4 C 1.52999 * 109.47397 * 182.05944 * 3 2 1 5 5 C 1.50709 * 109.46782 * 62.06178 * 3 2 1 6 6 H 1.07994 * 119.99512 * 235.93364 * 5 3 2 7 7 C 1.37877 * 120.00087 * 55.93766 * 5 3 2 8 8 N 1.31507 * 119.99980 * 208.75392 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 28.47065 * 7 5 3 10 10 H 1.48500 * 109.46942 * 180.27360 * 9 7 5 11 11 H 1.48492 * 109.47377 * 300.27750 * 9 7 5 12 12 H 1.48503 * 109.46941 * 60.27915 * 9 7 5 13 13 C 1.52999 * 109.47417 * 302.06414 * 3 2 1 14 14 C 1.50700 * 109.46777 * 299.99696 * 13 3 2 15 15 N 1.31133 * 126.55008 * 89.99928 * 14 13 3 16 16 C 1.34503 * 105.61145 * 180.02562 * 15 14 13 17 17 C 1.50698 * 126.28708 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.46949 * 89.99604 * 17 16 15 19 19 O 1.42900 * 109.46931 * 180.02562 * 18 17 16 20 20 C 1.42895 * 113.99917 * 180.02562 * 19 18 17 21 21 N 1.29942 * 107.42599 * 359.97438 * 16 15 14 22 22 O 1.21304 * 110.25236 * 359.71332 * 21 16 15 23 23 H 1.09002 * 109.46568 * 299.99719 * 1 2 3 24 24 H 1.08996 * 109.46877 * 59.99397 * 1 2 3 25 25 H 1.08992 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47267 * 240.00142 * 2 1 3 27 27 H 1.09003 * 109.47524 * 120.00644 * 2 1 3 28 28 H 1.09004 * 109.47258 * 307.01143 * 4 3 2 29 29 H 1.08997 * 109.47083 * 67.01413 * 4 3 2 30 30 H 1.09005 * 109.47231 * 187.01786 * 4 3 2 31 31 H 0.97006 * 120.00241 * 354.61724 * 8 7 5 32 32 H 1.08994 * 109.47148 * 59.99014 * 13 3 2 33 33 H 1.09000 * 109.47186 * 180.02562 * 13 3 2 34 34 H 1.08997 * 109.47218 * 210.00006 * 17 16 15 35 35 H 1.09004 * 109.47118 * 330.00136 * 17 16 15 36 36 H 1.08997 * 109.47488 * 300.00236 * 18 17 16 37 37 H 1.09004 * 109.46777 * 60.00322 * 18 17 16 38 38 H 1.09002 * 109.47294 * 59.99932 * 20 19 18 39 39 H 1.09005 * 109.47151 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47224 * 299.99897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5692 1.4427 -0.0518 5 6 1.5799 2.1379 1.2553 6 1 1.0115 3.0537 1.1878 7 6 1.8846 1.6051 2.4899 8 7 1.0854 1.8164 3.5127 9 14 3.4285 0.5764 2.7079 10 1 3.5234 0.1187 4.1174 11 1 3.3689 -0.6028 1.8074 12 1 4.6207 1.3958 2.3723 13 6 1.4882 2.1786 -1.2224 14 6 1.9483 1.4831 -2.4776 15 7 1.3270 0.5144 -3.1063 16 6 2.1032 0.2119 -4.1622 17 6 1.8241 -0.8438 -5.2009 18 6 1.0229 -0.2290 -6.3503 19 8 0.7578 -1.2302 -7.3349 20 6 0.0110 -0.7576 -8.4578 21 7 3.1373 0.9977 -4.1230 22 8 3.0647 1.7398 -3.1662 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9600 0.8144 0.7485 29 1 3.9001 1.0529 -1.0144 30 1 3.9368 2.4612 0.0736 31 1 0.3242 2.4103 3.4189 32 1 0.3989 2.1784 -1.1855 33 1 1.8520 3.2061 -1.2226 34 1 2.7667 -1.2351 -5.5835 35 1 1.2504 -1.6538 -4.7506 36 1 0.0803 0.1623 -5.9677 37 1 1.5966 0.5811 -6.8006 38 1 0.5642 0.0410 -8.9520 39 1 -0.1489 -1.5770 -9.1587 40 1 -0.9524 -0.3765 -8.1191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234118162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:21 Heat of formation + Delta-G solvation = -2.564403 kcal Electronic energy + Delta-G solvation = -21215.503365 eV Core-core repulsion = 18033.262574 eV Total energy + Delta-G solvation = -3182.240792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.60422 -39.14042 -39.08268 -37.04882 -34.72663 -33.67599 -32.11991 -31.19502 -28.99199 -27.60883 -26.63753 -25.34797 -24.29049 -24.04555 -22.47776 -20.75425 -19.23856 -18.60459 -18.30033 -17.47838 -17.06421 -16.66009 -16.10873 -15.93430 -15.70100 -15.11836 -14.78636 -14.60696 -14.33614 -13.93106 -13.74116 -13.57077 -13.42718 -13.04016 -12.85584 -12.63712 -12.54418 -12.40979 -12.34578 -12.17978 -11.98750 -11.91289 -11.60817 -11.37503 -10.97312 -10.91726 -10.74603 -10.50295 -10.09424 -8.67487 -6.19548 0.11955 1.16448 1.46197 1.50919 1.72068 1.84978 2.34583 2.49250 2.92845 3.10166 3.19504 3.85542 3.93044 4.06288 4.07182 4.22738 4.26522 4.37367 4.49108 4.49676 4.54506 4.61155 4.69460 4.76050 4.80778 4.82746 4.84413 4.86173 4.92737 5.01967 5.08324 5.16511 5.32282 5.54248 5.62599 5.70038 6.05994 6.13555 6.20334 6.73741 7.14129 7.49082 8.72659 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004490 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.540984 B = 6234.783770 C = 6447.933825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.053 3.947 4 C -0.156 4.156 5 C -0.589 4.589 6 H 0.039 0.961 7 C 0.004 3.996 8 N -0.926 5.926 9 Si 1.074 2.926 10 H -0.312 1.312 11 H -0.258 1.258 12 H -0.266 1.266 13 C -0.010 4.010 14 C 0.215 3.785 15 N -0.495 5.495 16 C 0.169 3.831 17 C -0.022 4.022 18 C 0.077 3.923 19 O -0.406 6.406 20 C 0.025 3.975 21 N -0.403 5.403 22 O 0.065 5.935 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.260 0.740 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -3.302 -19.238 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.051 3.949 4 C -0.212 4.212 5 C -0.626 4.626 6 H 0.057 0.943 7 C -0.198 4.198 8 N -0.561 5.561 9 Si 0.903 3.097 10 H -0.241 1.241 11 H -0.185 1.185 12 H -0.192 1.192 13 C -0.049 4.049 14 C -0.004 4.004 15 N -0.229 5.229 16 C -0.104 4.104 17 C -0.061 4.061 18 C -0.001 4.001 19 O -0.326 6.326 20 C -0.071 4.071 21 N -0.115 5.115 22 O 0.010 5.990 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.501 -4.689 -18.804 19.438 hybrid contribution -1.088 1.526 -0.489 1.936 sum 0.414 -3.163 -19.293 19.555 Atomic orbital electron populations 1.21491 0.95600 0.99818 1.01093 1.21827 0.97016 0.97421 0.98939 1.18416 0.91789 0.92691 0.92043 1.22411 0.98094 1.01639 0.99106 1.21667 1.38229 1.11484 0.91215 0.94286 1.26493 1.01516 0.98921 0.92860 1.70985 1.14543 1.33596 1.36948 0.83896 0.74927 0.76886 0.73980 1.24115 1.18455 1.19208 1.20536 1.02392 0.98813 0.83161 1.29247 0.82609 0.92350 0.96229 1.71997 1.29820 1.14120 1.06937 1.25951 0.88119 0.99523 0.96839 1.19753 1.03230 0.93007 0.90096 1.22239 0.98788 0.90535 0.88496 1.87794 1.75713 1.36493 1.32582 1.22978 0.94928 1.01445 0.87725 1.74573 1.23310 1.07245 1.06382 1.85295 1.39366 1.46212 1.28145 0.94273 0.92301 0.93935 0.94337 0.93956 0.94518 0.94064 0.91668 0.93065 0.87436 0.87546 0.87465 0.87347 0.92632 0.92734 0.93137 0.87752 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.29 71.98 0.67 -4.20 16 2 C -0.11 -4.75 4.37 30.59 0.13 -4.61 16 3 C 0.05 2.18 0.30 -52.93 -0.02 2.17 16 4 C -0.16 -6.12 7.38 71.98 0.53 -5.58 16 5 C -0.59 -29.40 7.25 25.60 0.19 -29.22 16 6 H 0.04 2.09 7.99 -2.91 -0.02 2.07 16 7 C 0.00 0.21 5.11 84.66 0.43 0.64 16 8 N -0.93 -54.40 13.69 21.45 0.29 -54.10 16 9 Si 1.07 49.38 23.37 68.60 1.60 50.98 16 10 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 11 H -0.26 -10.98 5.53 99.48 0.55 -10.43 16 12 H -0.27 -11.24 6.85 99.48 0.68 -10.56 16 13 C -0.01 -0.35 4.45 29.85 0.13 -0.22 16 14 C 0.21 7.16 5.75 88.38 0.51 7.67 16 15 N -0.49 -16.30 10.86 -303.19 -3.29 -19.59 16 16 C 0.17 5.02 7.47 138.46 1.03 6.06 16 17 C -0.02 -0.51 6.21 29.85 0.19 -0.32 16 18 C 0.08 1.60 5.92 71.98 0.43 2.03 16 19 O -0.41 -8.30 10.70 -148.98 -1.59 -9.90 16 20 C 0.03 0.34 11.01 113.37 1.25 1.59 16 21 N -0.40 -12.91 12.16 -60.31 -0.73 -13.64 16 22 O 0.06 2.14 10.50 74.81 0.79 2.92 16 23 H 0.04 1.75 7.28 -2.39 -0.02 1.74 16 24 H 0.06 2.15 6.39 -2.39 -0.02 2.13 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.51 6.80 -2.38 -0.02 1.50 16 27 H 0.04 1.89 4.53 -2.39 -0.01 1.88 16 28 H 0.04 1.49 2.80 -2.38 -0.01 1.48 16 29 H 0.04 1.48 6.37 -2.39 -0.02 1.46 16 30 H 0.06 2.45 8.13 -2.38 -0.02 2.43 16 31 H 0.26 15.27 8.73 -92.70 -0.81 14.46 16 32 H 0.11 3.72 6.39 -2.39 -0.02 3.70 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -59.25 313.97 3.35 -55.91 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.81 Total: 11.43 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.47 Total: -24.01 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -3.73 Total: -87.34 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.81 Total: -6.97 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.60 Total: 50.98 kcal Total: -59.25 3.35 -55.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234118162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.342 kcal (2) G-P(sol) polarization free energy of solvation -59.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds