Wall clock time and date at job start Mon Mar 30 2020 07:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 C 1.52998 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47274 * 59.99489 * 3 2 1 6 6 H 1.07998 * 119.99826 * 239.99854 * 5 3 2 7 7 C 1.37876 * 119.99799 * 60.00709 * 5 3 2 8 8 N 1.31516 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47373 * 89.99625 * 9 7 5 11 11 H 1.48501 * 109.46989 * 209.99489 * 9 7 5 12 12 H 1.48500 * 109.47448 * 329.99323 * 9 7 5 13 13 C 1.53007 * 109.46965 * 299.99567 * 3 2 1 14 14 C 1.50693 * 109.47098 * 300.00467 * 13 3 2 15 15 N 1.31127 * 126.55551 * 90.24673 * 14 13 3 16 16 C 1.34498 * 105.61891 * 180.12111 * 15 14 13 17 17 C 1.50696 * 126.29048 * 179.90472 * 16 15 14 18 18 H 1.09007 * 109.47261 * 14.71907 * 17 16 15 19 19 C 1.52994 * 109.47318 * 254.71372 * 17 16 15 20 20 O 1.42901 * 109.47147 * 134.71454 * 17 16 15 21 21 C 1.42903 * 114.00267 * 210.00242 * 20 17 16 22 22 N 1.29947 * 107.42155 * 359.64063 * 16 15 14 23 23 O 1.21304 * 110.25231 * 0.23007 * 22 16 15 24 24 H 1.08998 * 109.47237 * 60.00515 * 1 2 3 25 25 H 1.09000 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47489 * 300.00502 * 1 2 3 27 27 H 1.08997 * 109.47036 * 239.99699 * 2 1 3 28 28 H 1.09007 * 109.46932 * 119.99440 * 2 1 3 29 29 H 1.09000 * 109.47268 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47237 * 299.99485 * 4 3 2 31 31 H 1.08997 * 109.47036 * 59.99699 * 4 3 2 32 32 H 0.97005 * 119.99981 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47328 * 179.97438 * 13 3 2 34 34 H 1.08999 * 109.46940 * 60.00307 * 13 3 2 35 35 H 1.09004 * 109.47136 * 180.02562 * 19 17 16 36 36 H 1.08995 * 109.47400 * 300.00080 * 19 17 16 37 37 H 1.09001 * 109.47227 * 59.99982 * 19 17 16 38 38 H 1.09002 * 109.47382 * 179.97438 * 21 20 17 39 39 H 1.09001 * 109.46938 * 59.99878 * 21 20 17 40 40 H 1.09004 * 109.46926 * 299.99999 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5376 2.1530 1.2304 6 1 0.9167 3.0311 1.1312 7 6 1.8707 1.6820 2.4827 8 7 2.6265 0.6125 2.6034 9 14 1.2486 2.5631 4.0078 10 1 -0.0598 1.9887 4.4122 11 1 2.2268 2.3920 5.1119 12 1 1.0841 4.0090 3.7118 13 6 1.5301 2.1637 -1.2494 14 6 2.0324 1.4532 -2.4797 15 7 1.4305 0.4799 -3.1199 16 6 2.2439 0.1619 -4.1428 17 6 2.0000 -0.9062 -5.1775 18 1 0.9552 -1.2151 -5.1416 19 6 2.8981 -2.1106 -4.8887 20 8 2.2994 -0.3891 -6.4756 21 6 1.5255 -0.9719 -7.5261 22 7 3.2761 0.9487 -4.0782 23 8 3.1741 1.6981 -3.1298 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9333 2.4701 -0.0011 30 1 3.9337 0.9286 0.8891 31 1 3.9329 0.9287 -0.8908 32 1 2.8605 0.2809 3.4844 33 1 1.8930 3.1915 -1.2492 34 1 0.4401 2.1637 -1.2494 35 1 2.7220 -2.8830 -5.6374 36 1 3.9428 -1.8018 -4.9247 37 1 2.6698 -2.5051 -3.8986 38 1 1.8119 -0.5261 -8.4787 39 1 0.4670 -0.7877 -7.3428 40 1 1.7071 -2.0463 -7.5581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234118499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:35 Heat of formation + Delta-G solvation = 10.135923 kcal Electronic energy + Delta-G solvation = -21518.667276 eV Core-core repulsion = 18336.977212 eV Total energy + Delta-G solvation = -3181.690064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.06522 -38.47861 -37.07190 -35.23983 -32.86527 -31.53159 -30.65092 -29.17644 -27.01725 -26.74049 -25.27071 -24.54428 -22.93903 -22.05188 -20.82946 -18.74527 -17.64747 -17.05842 -16.49855 -15.81792 -15.60153 -15.33692 -14.79119 -13.99795 -13.63139 -13.42269 -13.35570 -12.87677 -12.57880 -12.31120 -12.15936 -11.95604 -11.77087 -11.40638 -11.16878 -11.12072 -11.00024 -10.90799 -10.69573 -10.51499 -10.38191 -10.23840 -10.04429 -9.87926 -9.48039 -9.36301 -9.02437 -8.69790 -8.36352 -6.01798 -4.12281 1.70034 2.62413 3.27505 3.32634 3.35358 3.36866 3.48696 4.14098 4.38086 4.60412 4.84099 4.98603 5.11746 5.20401 5.24955 5.43027 5.44995 5.59695 5.72461 5.99711 6.06379 6.09291 6.16527 6.39681 6.47043 6.56484 6.61283 6.77401 6.86745 6.93444 7.07291 7.10137 7.34155 7.48271 7.63580 7.72013 7.97293 8.13310 8.36412 8.69099 8.86210 9.52409 10.99365 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.004625 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.934459 B = 6052.893752 C = 6171.514522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C 0.079 3.921 4 C -0.136 4.136 5 C -0.503 4.503 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C -0.028 4.028 14 C 0.222 3.778 15 N -0.486 5.486 16 C 0.156 3.844 17 C 0.184 3.816 18 H 0.090 0.910 19 C -0.168 4.168 20 O -0.377 6.377 21 C 0.031 3.969 22 N -0.376 5.376 23 O 0.071 5.929 24 H 0.037 0.963 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.003 0.997 32 H 0.260 0.740 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -3.149 -12.608 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.077 3.923 4 C -0.193 4.193 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 C 0.003 3.997 15 N -0.221 5.221 16 C -0.117 4.117 17 C 0.125 3.875 18 H 0.108 0.892 19 C -0.226 4.226 20 O -0.295 6.295 21 C -0.066 4.066 22 N -0.085 5.085 23 O 0.013 5.987 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.781 -3.448 -13.179 13.738 hybrid contribution -0.503 0.257 0.949 1.105 sum -2.284 -3.191 -12.230 12.844 Atomic orbital electron populations 1.21616 0.97804 0.98355 1.00907 1.21527 0.94442 0.98178 1.00422 1.18201 0.92576 0.92516 0.88998 1.21905 0.97630 0.99462 1.00345 1.20888 1.31635 1.12047 0.89534 0.92274 1.24848 0.94827 0.94862 0.98744 1.69810 1.36357 1.22621 1.23254 0.86609 0.78569 0.80108 0.82802 1.20733 1.21343 1.19897 1.20951 1.01563 0.98293 0.85877 1.29406 0.82085 0.92172 0.96018 1.71895 1.29301 1.14077 1.06804 1.25324 0.88991 0.99963 0.97435 1.19929 0.99865 0.87992 0.79712 0.89169 1.22236 1.01008 0.96572 1.02796 1.87992 1.62529 1.64474 1.14463 1.22844 0.95098 0.97994 0.90630 1.74563 1.22749 1.05887 1.05293 1.85322 1.38172 1.45853 1.29366 0.94390 0.95981 0.92235 0.96636 0.89062 0.94950 0.89364 0.97777 0.92952 0.89380 0.88062 0.91265 0.91184 0.90694 0.89328 0.93724 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.31 37.16 0.35 -2.36 16 2 C -0.11 -2.45 4.50 -26.73 -0.12 -2.57 16 3 C 0.08 1.76 0.30 -155.66 -0.05 1.71 16 4 C -0.14 -3.12 8.00 37.16 0.30 -2.82 16 5 C -0.50 -12.23 6.75 -34.44 -0.23 -12.46 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 8 N -0.88 -23.02 9.36 55.43 0.52 -22.50 16 9 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16 14 C 0.22 4.32 5.74 -13.06 -0.07 4.24 16 15 N -0.49 -9.38 10.82 -9.87 -0.11 -9.49 16 16 C 0.16 2.85 7.10 -156.37 -1.11 1.74 16 17 C 0.18 2.65 3.27 -27.89 -0.09 2.56 16 18 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 19 C -0.17 -2.09 9.51 37.15 0.35 -1.74 16 20 O -0.38 -5.34 10.33 -35.23 -0.36 -5.70 16 21 C 0.03 0.29 10.82 101.05 1.09 1.38 16 22 N -0.38 -7.37 12.16 30.90 0.38 -6.99 16 23 O 0.07 1.41 10.69 18.09 0.19 1.60 16 24 H 0.04 0.74 6.43 -51.93 -0.33 0.40 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 1.30 7.22 -51.93 -0.37 0.93 16 27 H 0.01 0.34 6.68 -51.93 -0.35 0.00 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 31 H 0.00 0.07 6.74 -51.93 -0.35 -0.28 16 32 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.88 6.43 -51.93 -0.33 1.54 16 35 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -27.49 321.32 -5.45 -32.94 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.09 Total: -0.24 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 0.20 Total: -9.34 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.79 Total: -38.99 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.17 Total: -4.10 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.49 -5.45 -32.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234118499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.080 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds