Wall clock time and date at job start Mon Mar 30 2020 07:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 C 1.52998 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47274 * 59.99489 * 3 2 1 6 6 H 1.07998 * 119.99826 * 239.99854 * 5 3 2 7 7 C 1.37876 * 119.99799 * 60.00709 * 5 3 2 8 8 N 1.31516 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47373 * 89.99625 * 9 7 5 11 11 H 1.48501 * 109.46989 * 209.99489 * 9 7 5 12 12 H 1.48500 * 109.47448 * 329.99323 * 9 7 5 13 13 C 1.53007 * 109.46965 * 299.99567 * 3 2 1 14 14 C 1.50693 * 109.47098 * 300.00467 * 13 3 2 15 15 N 1.31127 * 126.55551 * 90.24673 * 14 13 3 16 16 C 1.34498 * 105.61891 * 180.12111 * 15 14 13 17 17 C 1.50696 * 126.29048 * 179.90472 * 16 15 14 18 18 H 1.09007 * 109.47261 * 14.71907 * 17 16 15 19 19 C 1.52994 * 109.47318 * 254.71372 * 17 16 15 20 20 O 1.42901 * 109.47147 * 134.71454 * 17 16 15 21 21 C 1.42903 * 114.00267 * 210.00242 * 20 17 16 22 22 N 1.29947 * 107.42155 * 359.64063 * 16 15 14 23 23 O 1.21304 * 110.25231 * 0.23007 * 22 16 15 24 24 H 1.08998 * 109.47237 * 60.00515 * 1 2 3 25 25 H 1.09000 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47489 * 300.00502 * 1 2 3 27 27 H 1.08997 * 109.47036 * 239.99699 * 2 1 3 28 28 H 1.09007 * 109.46932 * 119.99440 * 2 1 3 29 29 H 1.09000 * 109.47268 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47237 * 299.99485 * 4 3 2 31 31 H 1.08997 * 109.47036 * 59.99699 * 4 3 2 32 32 H 0.97005 * 119.99981 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47328 * 179.97438 * 13 3 2 34 34 H 1.08999 * 109.46940 * 60.00307 * 13 3 2 35 35 H 1.09004 * 109.47136 * 180.02562 * 19 17 16 36 36 H 1.08995 * 109.47400 * 300.00080 * 19 17 16 37 37 H 1.09001 * 109.47227 * 59.99982 * 19 17 16 38 38 H 1.09002 * 109.47382 * 179.97438 * 21 20 17 39 39 H 1.09001 * 109.46938 * 59.99878 * 21 20 17 40 40 H 1.09004 * 109.46926 * 299.99999 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5376 2.1530 1.2304 6 1 0.9167 3.0311 1.1312 7 6 1.8707 1.6820 2.4827 8 7 2.6265 0.6125 2.6034 9 14 1.2486 2.5631 4.0078 10 1 -0.0598 1.9887 4.4122 11 1 2.2268 2.3920 5.1119 12 1 1.0841 4.0090 3.7118 13 6 1.5301 2.1637 -1.2494 14 6 2.0324 1.4532 -2.4797 15 7 1.4305 0.4799 -3.1199 16 6 2.2439 0.1619 -4.1428 17 6 2.0000 -0.9062 -5.1775 18 1 0.9552 -1.2151 -5.1416 19 6 2.8981 -2.1106 -4.8887 20 8 2.2994 -0.3891 -6.4756 21 6 1.5255 -0.9719 -7.5261 22 7 3.2761 0.9487 -4.0782 23 8 3.1741 1.6981 -3.1298 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9333 2.4701 -0.0011 30 1 3.9337 0.9286 0.8891 31 1 3.9329 0.9287 -0.8908 32 1 2.8605 0.2809 3.4844 33 1 1.8930 3.1915 -1.2492 34 1 0.4401 2.1637 -1.2494 35 1 2.7220 -2.8830 -5.6374 36 1 3.9428 -1.8018 -4.9247 37 1 2.6698 -2.5051 -3.8986 38 1 1.8119 -0.5261 -8.4787 39 1 0.4670 -0.7877 -7.3428 40 1 1.7071 -2.0463 -7.5581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234118499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:35 Heat of formation + Delta-G solvation = -6.691623 kcal Electronic energy + Delta-G solvation = -21519.396973 eV Core-core repulsion = 18336.977212 eV Total energy + Delta-G solvation = -3182.419761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.54108 -39.48785 -38.81503 -36.66180 -34.43671 -33.14578 -31.96026 -30.88023 -28.45038 -27.76441 -27.17941 -25.74836 -24.41687 -23.80119 -22.19690 -20.44085 -19.14624 -18.42638 -17.67627 -17.54880 -16.77834 -16.64996 -16.24709 -15.56453 -15.29583 -15.08038 -14.39039 -14.07554 -13.89139 -13.74810 -13.53163 -13.52366 -13.23753 -12.76890 -12.73946 -12.62764 -12.55687 -12.41039 -12.20915 -12.16585 -12.10643 -11.92839 -11.67368 -11.23412 -11.14054 -10.88713 -10.69989 -10.47457 -10.27446 -7.92856 -6.07768 0.21383 1.20381 1.50077 1.54105 1.60498 1.95592 2.23250 2.53862 2.96539 3.28514 3.32547 3.75973 3.96169 4.20628 4.42329 4.43346 4.43718 4.51637 4.57298 4.62621 4.66798 4.78299 4.82315 4.86941 4.93495 4.99355 5.04154 5.08727 5.12029 5.25510 5.33227 5.53346 5.70058 5.76892 5.85211 6.02528 6.09000 6.26346 6.47369 6.96813 7.21525 7.59099 9.06699 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.004625 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.934459 B = 6052.893752 C = 6171.514522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C 0.074 3.926 4 C -0.126 4.126 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.943 3.057 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.267 1.267 13 C -0.021 4.021 14 C 0.218 3.782 15 N -0.493 5.493 16 C 0.157 3.843 17 C 0.182 3.818 18 H 0.109 0.891 19 C -0.162 4.162 20 O -0.402 6.402 21 C 0.023 3.977 22 N -0.394 5.394 23 O 0.060 5.940 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.004 0.996 32 H 0.256 0.744 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -3.192 -13.843 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C 0.072 3.928 4 C -0.183 4.183 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.770 3.230 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.192 1.192 13 C -0.060 4.060 14 C -0.001 4.001 15 N -0.228 5.228 16 C -0.116 4.116 17 C 0.123 3.877 18 H 0.126 0.874 19 C -0.220 4.220 20 O -0.321 6.321 21 C -0.073 4.073 22 N -0.106 5.106 23 O 0.005 5.995 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.955 -3.471 -14.416 15.120 hybrid contribution -0.133 0.231 1.250 1.278 sum -3.087 -3.241 -13.167 13.907 Atomic orbital electron populations 1.21502 0.96239 0.99092 1.00859 1.21383 0.95723 0.98057 0.98628 1.18171 0.91980 0.92559 0.90065 1.21772 0.98377 0.99217 0.98979 1.21169 1.31105 1.12016 0.90161 0.91752 1.25449 0.95203 0.95437 1.01062 1.69958 1.37455 1.23767 1.23281 0.85790 0.77705 0.79499 0.79987 1.20736 1.22038 1.19164 1.20817 1.02117 0.98684 0.84399 1.29398 0.82179 0.92357 0.96161 1.71896 1.29679 1.14004 1.07226 1.26121 0.88020 0.99892 0.97588 1.20167 1.01217 0.87048 0.79316 0.87365 1.22209 0.99588 0.96645 1.03587 1.87956 1.63750 1.65453 1.14914 1.23123 0.95178 0.99253 0.89723 1.74556 1.23674 1.06689 1.05673 1.85299 1.38329 1.46233 1.29648 0.92974 0.94932 0.93528 0.97005 0.92134 0.94555 0.92023 0.97716 0.93432 0.87753 0.86988 0.87960 0.92778 0.91275 0.87975 0.92828 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.31 71.98 0.67 -4.17 16 2 C -0.10 -4.52 4.50 30.59 0.14 -4.38 16 3 C 0.07 3.26 0.30 -52.93 -0.02 3.24 16 4 C -0.13 -5.80 8.00 71.98 0.58 -5.23 16 5 C -0.51 -24.21 6.75 25.60 0.17 -24.04 16 6 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 7 C 0.03 1.39 5.15 84.65 0.44 1.82 16 8 N -0.91 -47.88 9.36 21.45 0.20 -47.68 16 9 Si 0.94 40.54 29.54 68.60 2.03 42.57 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 C -0.02 -0.79 4.50 29.85 0.13 -0.66 16 14 C 0.22 8.25 5.74 88.38 0.51 8.76 16 15 N -0.49 -18.38 10.82 -303.18 -3.28 -21.66 16 16 C 0.16 5.57 7.10 138.46 0.98 6.55 16 17 C 0.18 4.88 3.27 29.84 0.10 4.98 16 18 H 0.11 2.46 7.79 -2.38 -0.02 2.44 16 19 C -0.16 -3.74 9.51 71.98 0.68 -3.06 16 20 O -0.40 -10.61 10.33 -148.98 -1.54 -12.15 16 21 C 0.02 0.36 10.82 113.37 1.23 1.59 16 22 N -0.39 -15.27 12.16 -60.29 -0.73 -16.00 16 23 O 0.06 2.36 10.69 74.79 0.80 3.16 16 24 H 0.05 1.93 6.43 -2.39 -0.02 1.92 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.99 7.22 -2.39 -0.02 1.97 16 27 H 0.01 0.51 6.68 -2.39 -0.02 0.50 16 28 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 31 H 0.00 0.18 6.74 -2.39 -0.02 0.16 16 32 H 0.26 13.24 8.31 -92.70 -0.77 12.47 16 33 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.11 3.91 6.43 -2.39 -0.02 3.90 16 35 H 0.10 1.65 7.87 -2.38 -0.02 1.63 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 40 H 0.06 0.76 7.87 -2.38 -0.02 0.75 16 Total: -1.00 -58.06 321.32 4.11 -53.95 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.03 Total: 12.40 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.61 Total: -14.59 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.81 Total: -85.33 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.74 Total: -8.99 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -58.06 4.11 -53.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234118499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.254 kcal (2) G-P(sol) polarization free energy of solvation -58.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds