Wall clock time and date at job start Mon Mar 30 2020 07:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46584 * 2 1 4 4 C 1.52992 * 109.47268 * 60.00150 * 3 2 1 5 5 O 1.42904 * 109.47008 * 299.99688 * 3 2 1 6 6 C 1.42898 * 114.00188 * 300.00107 * 5 3 2 7 7 C 1.50700 * 109.46933 * 180.02562 * 3 2 1 8 8 N 1.29949 * 126.28586 * 359.68718 * 7 3 2 9 9 O 1.21303 * 110.24914 * 180.26448 * 8 7 3 10 10 C 1.33639 * 109.81253 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.55129 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47313 * 300.02595 * 11 10 9 14 14 C 1.53002 * 109.47080 * 60.02702 * 11 10 9 15 15 C 1.50702 * 109.47137 * 175.00277 * 14 11 10 16 16 H 1.08004 * 119.99977 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00040 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99777 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99946 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47493 * 89.99867 * 19 17 15 21 21 H 1.48506 * 109.47086 * 209.99904 * 19 17 15 22 22 H 1.48503 * 109.47268 * 329.99652 * 19 17 15 23 23 N 1.31128 * 106.89861 * 359.97438 * 10 9 8 24 24 H 1.09003 * 109.47152 * 60.00071 * 1 2 3 25 25 H 1.09005 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47281 * 299.99977 * 1 2 3 27 27 H 1.09004 * 109.47126 * 240.00301 * 2 1 3 28 28 H 1.08993 * 109.47660 * 119.99817 * 2 1 3 29 29 H 1.08995 * 109.47310 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47241 * 299.99803 * 4 3 2 31 31 H 1.09003 * 109.47214 * 59.99613 * 4 3 2 32 32 H 1.09004 * 109.46937 * 60.00490 * 6 5 3 33 33 H 1.09000 * 109.46933 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.47444 * 299.99896 * 6 5 3 35 35 H 1.09001 * 109.46913 * 299.99866 * 13 11 10 36 36 H 1.09002 * 109.47348 * 59.99707 * 13 11 10 37 37 H 1.08996 * 109.47147 * 180.02562 * 13 11 10 38 38 H 1.08997 * 109.47070 * 294.99762 * 14 11 10 39 39 H 1.09005 * 109.47261 * 54.99713 * 14 11 10 40 40 H 0.97000 * 119.99773 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 8 1.5636 2.1162 -1.1668 6 6 1.9853 1.5199 -2.3951 7 6 3.5469 1.4427 -0.0006 8 7 4.3161 0.3953 0.0046 9 8 5.4818 0.7305 0.0076 10 6 5.5698 2.0640 0.0050 11 6 6.8368 2.8799 0.0078 12 1 6.5859 3.9406 0.0051 13 6 7.6518 2.5519 1.2603 14 6 7.6602 2.5474 -1.2381 15 6 8.8657 3.4498 -1.2991 16 1 9.0280 4.1870 -0.5267 17 6 9.7608 3.3349 -2.3415 18 7 9.5629 2.4375 -3.2823 19 14 11.2546 4.4539 -2.4175 20 1 12.3881 3.8159 -1.7012 21 1 11.6307 4.6818 -3.8359 22 1 10.9324 5.7539 -1.7759 23 7 4.3429 2.5268 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8928 3.1916 1.2490 30 1 0.4399 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.6208 0.4938 -2.4448 33 1 1.5821 2.0892 -3.2326 34 1 3.0741 1.5216 -2.4448 35 1 7.0651 2.7888 2.1479 36 1 7.9027 1.4911 1.2632 37 1 8.5680 3.1424 1.2626 38 1 7.9863 1.5083 -1.1915 39 1 7.0490 2.6968 -2.1282 40 1 10.1928 2.3564 -4.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234162225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:12 Heat of formation + Delta-G solvation = 1.419008 kcal Electronic energy + Delta-G solvation = -21153.648004 eV Core-core repulsion = 17971.579946 eV Total energy + Delta-G solvation = -3182.068058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.18566 -39.29796 -35.90208 -35.06853 -33.90829 -32.50852 -30.82371 -29.94327 -27.16186 -26.43077 -25.63757 -24.60147 -23.06708 -22.73700 -20.79804 -19.27086 -17.69532 -17.15911 -16.57950 -16.14420 -15.91046 -15.47381 -14.60593 -14.55024 -14.42873 -13.43981 -13.37181 -12.74750 -12.65350 -12.64475 -12.22065 -12.17744 -12.00329 -11.93580 -11.66657 -11.39305 -11.21877 -11.08033 -10.98959 -10.92875 -10.89832 -10.56541 -10.52729 -10.18667 -9.95084 -9.82209 -9.28036 -9.22514 -8.46294 -6.10272 -4.14278 1.55012 2.54353 3.27700 3.32183 3.35271 3.37574 3.55717 3.77246 4.28379 4.39481 4.69813 4.75761 5.07043 5.18977 5.26259 5.28602 5.38897 5.43242 5.46023 5.52839 5.68361 5.69347 5.73619 5.80520 5.81853 5.83999 5.96173 6.05850 6.16474 6.23749 6.33288 6.54124 6.65259 6.80453 7.01451 7.45691 7.53701 7.85020 8.21089 8.55118 8.89957 9.50321 11.01067 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.004188 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.279735 B = 6684.887711 C = 6959.733643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.214 3.786 4 C -0.135 4.135 5 O -0.358 6.358 6 C 0.027 3.973 7 C 0.134 3.866 8 N -0.388 5.388 9 O 0.077 5.923 10 C 0.217 3.783 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.063 0.937 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.485 5.485 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.021 0.979 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.758 -3.315 7.304 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.172 3.828 4 C -0.192 4.192 5 O -0.275 6.275 6 C -0.070 4.070 7 C -0.140 4.140 8 N -0.098 5.098 9 O 0.020 5.980 10 C -0.002 4.002 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.218 5.218 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.464 -3.714 7.133 17.430 hybrid contribution 1.301 0.303 -0.402 1.395 sum -14.162 -3.411 6.731 16.047 Atomic orbital electron populations 1.21753 0.94232 1.01739 1.02736 1.22041 0.97261 0.95017 1.03920 1.19651 0.81188 0.93545 0.88405 1.21772 1.02083 1.01727 0.93644 1.88006 1.72590 1.53966 1.12973 1.22800 0.99593 0.98303 0.86290 1.26378 1.00448 0.84608 1.02560 1.74580 0.89711 1.24219 1.21328 1.85272 1.21647 1.25636 1.65492 1.29702 0.97356 0.81410 0.91769 1.20361 0.84639 0.96444 1.00748 0.87595 1.21778 1.00503 1.02741 0.94251 1.19239 0.93985 0.98270 0.89369 1.21056 1.07110 1.18822 1.08955 0.91929 1.25002 0.98220 0.95518 0.95463 1.69966 1.36822 1.34117 1.12084 0.86539 0.82846 0.81017 0.77303 1.20548 1.21223 1.19705 1.71925 0.99532 1.28896 1.21444 0.91930 0.92453 0.92070 0.90920 0.90338 0.90566 0.90373 0.91069 0.93529 0.89080 0.94151 0.94078 0.92340 0.89629 0.95313 0.96061 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.41 37.16 0.35 -1.01 16 2 C -0.14 -1.71 4.11 -26.72 -0.11 -1.82 16 3 C 0.21 3.02 0.79 -91.77 -0.07 2.94 16 4 C -0.13 -1.60 8.47 37.15 0.31 -1.28 16 5 O -0.36 -5.30 9.66 -35.23 -0.34 -5.64 16 6 C 0.03 0.36 10.31 101.05 1.04 1.40 16 7 C 0.13 2.34 5.30 -156.37 -0.83 1.51 16 8 N -0.39 -7.14 11.47 30.90 0.35 -6.78 16 9 O 0.08 1.51 11.31 18.11 0.20 1.72 16 10 C 0.22 4.24 7.02 -13.06 -0.09 4.15 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 12 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 13 C -0.13 -2.30 8.98 37.15 0.33 -1.97 16 14 C 0.03 0.71 4.43 -27.88 -0.12 0.59 16 15 C -0.52 -13.63 8.41 -34.44 -0.29 -13.92 16 16 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 N -0.49 -9.37 11.55 -9.87 -0.11 -9.48 16 24 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.75 6.43 -51.93 -0.33 0.42 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.55 6.42 -51.93 -0.33 0.22 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.65 7.15 -51.93 -0.37 0.28 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -29.54 328.02 -5.27 -34.81 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.20 Total: -2.01 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 0.17 Total: -8.15 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.98 Total: -41.34 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.14 Total: -3.92 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.54 -5.27 -34.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234162225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.227 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds