Wall clock time and date at job start Mon Mar 30 2020 07:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99572 * 2 1 4 4 H 1.08999 * 109.46862 * 30.00367 * 3 2 1 5 5 C 1.50700 * 109.47273 * 270.00240 * 3 2 1 6 6 N 1.29954 * 126.28649 * 315.02970 * 5 3 2 7 7 O 1.21294 * 110.24985 * 179.73386 * 6 5 3 8 8 C 1.33643 * 109.81343 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55336 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46860 * 269.97182 * 9 8 7 11 11 H 1.09001 * 109.47134 * 55.00045 * 10 9 8 12 12 C 1.52995 * 109.47233 * 295.00109 * 10 9 8 13 13 C 1.50697 * 109.46856 * 174.99816 * 10 9 8 14 14 H 1.08002 * 120.00263 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99928 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99815 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00033 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46816 * 90.00223 * 17 15 13 19 19 H 1.48497 * 109.47147 * 210.00141 * 17 15 13 20 20 H 1.48498 * 109.47030 * 330.00317 * 17 15 13 21 21 N 1.31132 * 106.89433 * 359.97438 * 8 7 6 22 22 C 1.52997 * 109.46715 * 150.00353 * 3 2 1 23 23 C 1.52997 * 109.47239 * 180.02562 * 22 3 2 24 24 C 1.53003 * 109.47375 * 300.00279 * 22 3 2 25 25 H 1.08998 * 109.46809 * 299.99531 * 1 2 3 26 26 H 1.08994 * 109.47587 * 60.00122 * 1 2 3 27 27 H 1.09002 * 109.46689 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47064 * 29.97104 * 9 8 7 29 29 H 1.09000 * 109.47579 * 149.97736 * 9 8 7 30 30 H 1.09001 * 109.47008 * 300.00012 * 12 10 9 31 31 H 1.08994 * 109.47492 * 59.99626 * 12 10 9 32 32 H 1.08998 * 109.46891 * 180.02562 * 12 10 9 33 33 H 0.96999 * 119.99887 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47160 * 59.99642 * 22 3 2 35 35 H 1.09002 * 109.47047 * 59.99360 * 23 22 3 36 36 H 1.08998 * 109.47230 * 180.02562 * 23 22 3 37 37 H 1.09004 * 109.47003 * 300.00002 * 23 22 3 38 38 H 1.08996 * 109.46890 * 59.99618 * 24 22 3 39 39 H 1.08998 * 109.47433 * 180.02562 * 24 22 3 40 40 H 1.09002 * 109.46408 * 300.00332 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7645 -1.4208 6 7 2.7109 1.0594 -2.3930 7 8 2.7386 1.7132 -3.4142 8 6 2.2471 2.9344 -3.1838 9 6 2.1062 4.0494 -4.1877 10 6 3.3807 4.8961 -4.1916 11 1 4.2428 4.2542 -4.3730 12 6 3.5369 5.5889 -2.8365 13 6 3.2902 5.9350 -5.2795 14 1 2.4115 5.9865 -5.9053 15 6 4.3289 6.8204 -5.4753 16 7 5.3987 6.7580 -4.7130 17 14 4.2171 8.1078 -6.8243 18 1 3.5960 9.3420 -6.2803 19 1 5.5797 8.4189 -7.3258 20 1 3.3865 7.5856 -7.9391 21 7 1.9097 2.9766 -1.9173 22 6 3.3589 1.2633 0.7212 23 6 3.9809 2.6612 0.7218 24 6 3.1516 0.7973 2.1637 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9476 3.6271 -5.1799 29 1 1.2552 4.6752 -3.9189 30 1 2.6748 6.2308 -2.6551 31 1 3.6022 4.8375 -2.0496 32 1 4.4445 6.1924 -2.8394 33 1 6.1292 7.3811 -4.8505 34 1 4.0241 0.5694 0.2073 35 1 3.3154 3.3547 1.2359 36 1 4.9419 2.6310 1.2352 37 1 4.1286 2.9936 -0.3057 38 1 2.7082 -0.1985 2.1636 39 1 4.1123 0.7676 2.6776 40 1 2.4863 1.4911 2.6775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234743163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:12 Heat of formation + Delta-G solvation = -0.396585 kcal Electronic energy + Delta-G solvation = -21133.085098 eV Core-core repulsion = 17950.938310 eV Total energy + Delta-G solvation = -3182.146788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.10457 -38.84863 -35.87065 -35.35538 -34.50300 -32.48956 -30.63979 -27.99518 -27.27106 -26.59259 -25.90302 -25.18134 -23.12398 -21.88171 -20.38506 -19.43671 -17.69028 -17.22705 -16.62011 -16.29478 -15.70122 -15.42599 -14.67400 -14.48965 -14.15459 -13.60316 -13.14994 -13.07828 -12.74344 -12.50729 -12.25030 -12.13620 -11.67772 -11.64781 -11.46620 -11.32203 -11.05458 -11.00927 -10.89514 -10.69596 -10.66215 -10.50482 -10.18574 -10.07135 -9.98696 -9.89738 -9.13174 -8.94808 -8.41675 -6.06512 -4.15059 1.65160 2.61403 3.27585 3.34364 3.36068 3.39158 3.43204 3.93387 4.37820 4.56027 4.75303 4.80368 5.08432 5.11679 5.21757 5.25056 5.30095 5.47620 5.56504 5.58291 5.63820 5.79559 5.85283 5.97931 6.03999 6.10466 6.20336 6.21321 6.31846 6.44198 6.55051 6.90717 6.93275 7.12278 7.23883 7.62576 7.83498 8.04541 8.29098 8.64722 8.87300 9.50597 10.99536 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032756 B = 0.004347 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.610546 B = 6439.748040 C = 6946.387414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.190 3.810 4 H 0.090 0.910 5 C 0.136 3.864 6 N -0.376 5.376 7 O 0.069 5.931 8 C 0.214 3.786 9 C -0.027 4.027 10 C 0.050 3.950 11 H 0.031 0.969 12 C -0.137 4.137 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.487 5.487 22 C -0.087 4.087 23 C -0.146 4.146 24 C -0.141 4.141 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.010 0.990 32 H 0.082 0.918 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -9.700 10.311 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.284 6.284 3 C 0.130 3.870 4 H 0.108 0.892 5 C -0.138 4.138 6 N -0.086 5.086 7 O 0.011 5.989 8 C -0.005 4.005 9 C -0.066 4.066 10 C 0.031 3.969 11 H 0.049 0.951 12 C -0.194 4.194 13 C -0.556 4.556 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.222 5.222 22 C -0.106 4.106 23 C -0.203 4.203 24 C -0.198 4.198 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.698 -10.453 10.825 16.471 hybrid contribution -0.193 1.089 -0.942 1.453 sum -6.891 -9.364 9.884 15.260 Atomic orbital electron populations 1.22851 0.80826 1.02881 1.00223 1.87980 1.19889 1.26223 1.94346 1.20308 0.96557 0.84958 0.85144 0.89203 1.26257 0.99997 0.87939 0.99608 1.74567 1.20507 1.19511 0.93992 1.85300 1.60670 1.22476 1.30476 1.29554 0.89898 0.87649 0.93445 1.20835 1.04146 0.88992 0.92597 1.18725 0.89594 0.93474 0.95138 0.95061 1.21819 1.02632 0.99401 0.95578 1.21028 1.03388 1.15388 1.15814 0.92156 1.24945 0.95199 0.97447 0.96198 1.69897 1.06709 1.37298 1.38551 0.86543 0.77348 0.81759 0.82053 1.20643 1.21226 1.19783 1.71931 1.23884 1.19652 1.06722 1.21171 0.94043 0.98952 0.96464 1.21797 1.00726 0.94920 1.02859 1.21763 1.01891 1.01686 0.94497 0.93565 0.94154 0.89304 0.89197 0.88391 0.95208 0.97051 0.89928 0.92852 0.90006 0.92053 0.91804 0.92256 0.91794 0.92190 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.40 16 2 O -0.37 -5.07 9.66 -35.23 -0.34 -5.41 16 3 C 0.19 2.71 2.25 -27.88 -0.06 2.65 16 4 H 0.09 1.17 7.79 -51.93 -0.40 0.76 16 5 C 0.14 2.39 5.79 -156.38 -0.91 1.48 16 6 N -0.38 -7.18 12.16 30.90 0.38 -6.80 16 7 O 0.07 1.33 11.31 18.10 0.20 1.54 16 8 C 0.21 4.09 6.97 -13.06 -0.09 4.00 16 9 C -0.03 -0.51 5.26 -27.88 -0.15 -0.66 16 10 C 0.05 1.19 2.29 -91.77 -0.21 0.98 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.14 -3.24 8.78 37.15 0.33 -2.92 16 13 C -0.52 -13.34 8.56 -34.44 -0.29 -13.63 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 17 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.49 -9.16 10.88 -9.87 -0.11 -9.27 16 22 C -0.09 -1.12 2.71 -90.62 -0.25 -1.37 16 23 C -0.15 -1.95 8.95 37.16 0.33 -1.62 16 24 C -0.14 -1.42 9.05 37.16 0.34 -1.08 16 25 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.01 0.24 6.85 -51.93 -0.36 -0.12 16 32 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.98 7.22 -51.93 -0.37 0.61 16 38 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -28.69 332.19 -5.68 -34.36 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.46 Total: -1.66 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.04 Total: -9.16 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.90 Total: -40.10 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.14 Total: -3.87 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.69 -5.68 -34.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234743163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.968 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds