Wall clock time and date at job start Mon Mar 30 2020 07:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99572 * 2 1 4 4 H 1.08999 * 109.46862 * 30.00367 * 3 2 1 5 5 C 1.50700 * 109.47273 * 270.00240 * 3 2 1 6 6 N 1.29954 * 126.28649 * 315.02970 * 5 3 2 7 7 O 1.21294 * 110.24985 * 179.73386 * 6 5 3 8 8 C 1.33643 * 109.81343 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55336 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46860 * 269.97182 * 9 8 7 11 11 H 1.09001 * 109.47134 * 55.00045 * 10 9 8 12 12 C 1.52995 * 109.47233 * 295.00109 * 10 9 8 13 13 C 1.50697 * 109.46856 * 174.99816 * 10 9 8 14 14 H 1.08002 * 120.00263 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99928 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99815 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00033 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46816 * 90.00223 * 17 15 13 19 19 H 1.48497 * 109.47147 * 210.00141 * 17 15 13 20 20 H 1.48498 * 109.47030 * 330.00317 * 17 15 13 21 21 N 1.31132 * 106.89433 * 359.97438 * 8 7 6 22 22 C 1.52997 * 109.46715 * 150.00353 * 3 2 1 23 23 C 1.52997 * 109.47239 * 180.02562 * 22 3 2 24 24 C 1.53003 * 109.47375 * 300.00279 * 22 3 2 25 25 H 1.08998 * 109.46809 * 299.99531 * 1 2 3 26 26 H 1.08994 * 109.47587 * 60.00122 * 1 2 3 27 27 H 1.09002 * 109.46689 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47064 * 29.97104 * 9 8 7 29 29 H 1.09000 * 109.47579 * 149.97736 * 9 8 7 30 30 H 1.09001 * 109.47008 * 300.00012 * 12 10 9 31 31 H 1.08994 * 109.47492 * 59.99626 * 12 10 9 32 32 H 1.08998 * 109.46891 * 180.02562 * 12 10 9 33 33 H 0.96999 * 119.99887 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47160 * 59.99642 * 22 3 2 35 35 H 1.09002 * 109.47047 * 59.99360 * 23 22 3 36 36 H 1.08998 * 109.47230 * 180.02562 * 23 22 3 37 37 H 1.09004 * 109.47003 * 300.00002 * 23 22 3 38 38 H 1.08996 * 109.46890 * 59.99618 * 24 22 3 39 39 H 1.08998 * 109.47433 * 180.02562 * 24 22 3 40 40 H 1.09002 * 109.46408 * 300.00332 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7645 -1.4208 6 7 2.7109 1.0594 -2.3930 7 8 2.7386 1.7132 -3.4142 8 6 2.2471 2.9344 -3.1838 9 6 2.1062 4.0494 -4.1877 10 6 3.3807 4.8961 -4.1916 11 1 4.2428 4.2542 -4.3730 12 6 3.5369 5.5889 -2.8365 13 6 3.2902 5.9350 -5.2795 14 1 2.4115 5.9865 -5.9053 15 6 4.3289 6.8204 -5.4753 16 7 5.3987 6.7580 -4.7130 17 14 4.2171 8.1078 -6.8243 18 1 3.5960 9.3420 -6.2803 19 1 5.5797 8.4189 -7.3258 20 1 3.3865 7.5856 -7.9391 21 7 1.9097 2.9766 -1.9173 22 6 3.3589 1.2633 0.7212 23 6 3.9809 2.6612 0.7218 24 6 3.1516 0.7973 2.1637 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9476 3.6271 -5.1799 29 1 1.2552 4.6752 -3.9189 30 1 2.6748 6.2308 -2.6551 31 1 3.6022 4.8375 -2.0496 32 1 4.4445 6.1924 -2.8394 33 1 6.1292 7.3811 -4.8505 34 1 4.0241 0.5694 0.2073 35 1 3.3154 3.3547 1.2359 36 1 4.9419 2.6310 1.2352 37 1 4.1286 2.9936 -0.3057 38 1 2.7082 -0.1985 2.1636 39 1 4.1123 0.7676 2.6776 40 1 2.4863 1.4911 2.6775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234743163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:12 Heat of formation + Delta-G solvation = -18.427990 kcal Electronic energy + Delta-G solvation = -21133.866998 eV Core-core repulsion = 17950.938310 eV Total energy + Delta-G solvation = -3182.928688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.57461 -39.90875 -37.54040 -36.64764 -35.80404 -34.22906 -32.37393 -29.05524 -28.32118 -28.16165 -27.23297 -26.87912 -24.58371 -23.30681 -21.82155 -20.86033 -19.19800 -18.61416 -18.26560 -17.66613 -16.89887 -16.57064 -16.44503 -15.87352 -15.44138 -14.91962 -14.66463 -14.31177 -14.05615 -13.89702 -13.50717 -13.35548 -13.09245 -12.97451 -12.86424 -12.73482 -12.56558 -12.47900 -12.19733 -12.17219 -12.03380 -12.00127 -11.78802 -11.73107 -11.59421 -11.07798 -10.91398 -10.72950 -10.43930 -8.08163 -6.23030 0.15903 1.18358 1.47992 1.49189 1.58778 1.90456 2.31801 2.47874 2.71001 3.20372 3.22053 3.69562 3.73765 4.02571 4.19787 4.24449 4.36802 4.42535 4.42956 4.50787 4.57414 4.63105 4.72263 4.74299 4.80917 4.87958 4.94874 4.99440 5.04740 5.09458 5.17650 5.25732 5.34367 5.37960 5.61537 5.85028 5.94330 6.05787 6.29440 6.87716 7.17232 7.46429 8.97588 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032756 B = 0.004347 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.610546 B = 6439.748040 C = 6946.387414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.189 3.811 4 H 0.106 0.894 5 C 0.143 3.857 6 N -0.394 5.394 7 O 0.057 5.943 8 C 0.208 3.792 9 C -0.015 4.015 10 C 0.049 3.951 11 H -0.002 1.002 12 C -0.122 4.122 13 C -0.529 4.529 14 H 0.072 0.928 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.262 1.262 21 N -0.493 5.493 22 C -0.084 4.084 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.016 0.984 32 H 0.053 0.947 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -9.834 11.096 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.129 3.871 4 H 0.124 0.876 5 C -0.131 4.131 6 N -0.106 5.106 7 O 0.002 5.998 8 C -0.011 4.011 9 C -0.054 4.054 10 C 0.029 3.971 11 H 0.016 0.984 12 C -0.180 4.180 13 C -0.567 4.567 14 H 0.090 0.910 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.186 1.186 21 N -0.228 5.228 22 C -0.104 4.104 23 C -0.199 4.199 24 C -0.190 4.190 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.202 -10.595 11.589 17.716 hybrid contribution 0.258 1.077 -1.132 1.584 sum -7.944 -9.519 10.457 16.219 Atomic orbital electron populations 1.23080 0.79181 1.04439 1.00665 1.87972 1.21721 1.25765 1.94198 1.20563 0.97703 0.85656 0.83228 0.87629 1.26956 0.98230 0.87186 1.00716 1.74556 1.21643 1.20082 0.94361 1.85279 1.60995 1.22617 1.30887 1.29514 0.90140 0.87752 0.93682 1.20632 1.02156 0.88721 0.93901 1.18606 0.90589 0.93290 0.94580 0.98387 1.21626 1.01238 0.99083 0.96035 1.21442 1.03586 1.15481 1.16193 0.91031 1.25763 0.94969 0.99579 0.98320 1.70047 1.07447 1.38235 1.40209 0.85536 0.77139 0.79260 0.79605 1.20216 1.21590 1.18590 1.71933 1.24062 1.20273 1.06546 1.21169 0.92919 0.98128 0.98181 1.21772 1.02007 0.95495 1.00633 1.21712 1.03029 1.01964 0.92285 0.91224 0.95524 0.87310 0.87315 0.86928 0.94732 0.96484 0.92854 0.93073 0.91847 0.90972 0.90288 0.96088 0.91612 0.90933 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.81 113.37 1.23 1.65 16 2 O -0.38 -9.83 9.66 -148.98 -1.44 -11.27 16 3 C 0.19 5.12 2.25 29.85 0.07 5.18 16 4 H 0.11 2.51 7.79 -2.39 -0.02 2.49 16 5 C 0.14 4.98 5.79 138.46 0.80 5.78 16 6 N -0.39 -15.13 12.16 -60.33 -0.73 -15.87 16 7 O 0.06 2.23 11.31 74.84 0.85 3.08 16 8 C 0.21 7.95 6.97 88.38 0.62 8.56 16 9 C -0.02 -0.57 5.26 29.85 0.16 -0.42 16 10 C 0.05 2.34 2.29 -11.54 -0.03 2.32 16 11 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 12 C -0.12 -5.87 8.78 71.98 0.63 -5.24 16 13 C -0.53 -27.06 8.56 25.60 0.22 -26.84 16 14 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 17 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 N -0.49 -18.31 10.88 -303.20 -3.30 -21.61 16 22 C -0.08 -2.08 2.71 -10.79 -0.03 -2.11 16 23 C -0.14 -3.69 8.95 71.98 0.64 -3.04 16 24 C -0.13 -2.32 9.05 71.98 0.65 -1.67 16 25 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.75 6.85 -2.39 -0.02 0.74 16 32 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 33 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.02 0.68 7.22 -2.39 -0.02 0.67 16 38 H 0.06 1.15 7.68 -2.39 -0.02 1.13 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -61.78 332.19 4.06 -57.71 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.01 Total: 10.87 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.41 Total: -14.72 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -3.79 Total: -89.40 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.59 Total: -8.19 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -61.78 4.06 -57.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234743163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.286 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds