Wall clock time and date at job start Mon Mar 30 2020 07:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99851 * 2 1 4 4 H 1.09005 * 109.47410 * 28.88003 * 3 2 1 5 5 C 1.50699 * 109.47238 * 268.87450 * 3 2 1 6 6 N 1.29947 * 126.28700 * 314.97939 * 5 3 2 7 7 O 1.21304 * 110.25075 * 179.97438 * 6 5 3 8 8 C 1.33639 * 109.80901 * 359.97438 * 7 6 5 9 9 C 1.50707 * 126.54599 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46761 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47273 * 300.02831 * 9 8 7 12 12 C 1.53002 * 109.46691 * 60.02997 * 9 8 7 13 13 C 1.50704 * 109.46753 * 174.99842 * 12 9 8 14 14 H 1.08003 * 119.99699 * 359.97438 * 13 12 9 15 15 C 1.37873 * 119.99709 * 179.72454 * 13 12 9 16 16 N 1.31506 * 120.00419 * 0.27400 * 15 13 12 17 17 Si 1.86805 * 119.99749 * 180.27325 * 15 13 12 18 18 H 1.48496 * 109.47345 * 89.99905 * 17 15 13 19 19 H 1.48504 * 109.46905 * 210.00083 * 17 15 13 20 20 H 1.48495 * 109.47045 * 329.99997 * 17 15 13 21 21 N 1.31121 * 106.89995 * 0.22684 * 8 7 6 22 22 C 1.53006 * 109.46994 * 148.87708 * 3 2 1 23 23 C 1.53000 * 109.46971 * 185.85331 * 22 3 2 24 24 C 1.52996 * 109.46917 * 305.85524 * 22 3 2 25 25 H 1.09009 * 109.47132 * 304.70798 * 1 2 3 26 26 H 1.08998 * 109.47305 * 64.70224 * 1 2 3 27 27 H 1.08995 * 109.47596 * 184.70940 * 1 2 3 28 28 H 1.09000 * 109.46564 * 180.02562 * 11 9 8 29 29 H 1.08997 * 109.46896 * 299.99753 * 11 9 8 30 30 H 1.08999 * 109.46845 * 60.00175 * 11 9 8 31 31 H 1.08999 * 109.47501 * 54.99716 * 12 9 8 32 32 H 1.08996 * 109.47215 * 294.99086 * 12 9 8 33 33 H 0.97008 * 120.00444 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47168 * 65.85144 * 22 3 2 35 35 H 1.09009 * 109.47019 * 60.00423 * 23 22 3 36 36 H 1.09005 * 109.46944 * 179.97438 * 23 22 3 37 37 H 1.08994 * 109.47172 * 300.00304 * 23 22 3 38 38 H 1.09004 * 109.47466 * 56.08726 * 24 22 3 39 39 H 1.09000 * 109.47270 * 176.09180 * 24 22 3 40 40 H 1.09008 * 109.47372 * 296.09274 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3359 2.0034 0.4963 5 6 2.2400 1.7530 -1.4205 6 7 2.7546 1.0405 -2.3777 7 8 2.8048 1.6876 -3.4024 8 6 2.3116 2.9114 -3.1899 9 6 2.1951 4.0205 -4.2036 10 1 1.7542 4.8987 -3.7321 11 6 3.5853 4.3718 -4.7372 12 6 1.3054 3.5622 -5.3609 13 6 1.0886 4.7102 -6.3129 14 1 1.5400 5.6706 -6.1123 15 6 0.3184 4.5328 -7.4426 16 7 -0.2316 3.3635 -7.6866 17 14 0.0560 5.9537 -8.6266 18 1 1.1257 5.9439 -9.6565 19 1 -1.2671 5.8108 -9.2857 20 1 0.1006 7.2358 -7.8788 21 7 1.9534 2.9644 -1.9297 22 6 3.3458 1.2691 0.7456 23 6 3.8977 2.6904 0.8729 24 6 3.1351 0.6770 2.1405 25 1 -0.3634 0.5852 0.8449 26 1 -0.3634 0.4391 -0.9291 27 1 -0.3634 -1.0241 0.0844 28 1 3.5010 5.1743 -5.4700 29 1 4.2191 4.6983 -3.9127 30 1 4.0261 3.4935 -5.2087 31 1 0.3444 3.2278 -4.9701 32 1 1.7894 2.7398 -5.8877 33 1 -0.7732 3.2386 -8.4817 34 1 4.0541 0.6524 0.1924 35 1 3.1893 3.3071 1.4262 36 1 4.8490 2.6646 1.4045 37 1 4.0477 3.1122 -0.1209 38 1 2.6773 -0.3083 2.0517 39 1 4.0966 0.5867 2.6460 40 1 2.4812 1.3307 2.7178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234743318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:56 Heat of formation + Delta-G solvation = -24.178149 kcal Electronic energy + Delta-G solvation = -20903.924567 eV Core-core repulsion = 17720.746533 eV Total energy + Delta-G solvation = -3183.178034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.63292 -39.94160 -37.55971 -36.73121 -35.80140 -34.48101 -32.43210 -29.07568 -28.95256 -28.19557 -26.95004 -26.27645 -24.73873 -23.92651 -21.88671 -20.80206 -19.10920 -18.67828 -18.47015 -17.64364 -16.95052 -16.51131 -16.49021 -16.11744 -15.47869 -15.09730 -14.47921 -14.43579 -13.97919 -13.84389 -13.69652 -13.33986 -13.08090 -13.03625 -12.85678 -12.79671 -12.67920 -12.56803 -12.30874 -12.24127 -12.15429 -11.98647 -11.89378 -11.72766 -11.53800 -11.27052 -11.09279 -10.83074 -10.55432 -8.18333 -6.29389 0.09840 1.10630 1.46966 1.47442 1.58337 1.84511 2.26756 2.44924 2.65899 3.12559 3.17281 3.66139 3.73106 3.98796 4.14253 4.19852 4.24535 4.27044 4.34727 4.36582 4.48314 4.59133 4.70493 4.73284 4.76716 4.81341 4.89933 4.99049 5.03139 5.07286 5.11530 5.26836 5.35341 5.39480 5.40742 5.56952 5.79080 5.90843 6.15375 6.84808 7.10351 7.40258 8.94293 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.004091 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.156295 B = 6842.306198 C = 7298.667403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.185 3.815 4 H 0.106 0.894 5 C 0.144 3.856 6 N -0.394 5.394 7 O 0.059 5.941 8 C 0.210 3.790 9 C 0.009 3.991 10 H 0.115 0.885 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.080 0.920 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.257 1.257 21 N -0.499 5.499 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.053 0.947 31 H -0.014 1.014 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -1.336 17.985 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.296 6.296 3 C 0.125 3.875 4 H 0.124 0.876 5 C -0.130 4.130 6 N -0.106 5.106 7 O 0.005 5.995 8 C -0.009 4.009 9 C -0.011 4.011 10 H 0.133 0.867 11 C -0.186 4.186 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.098 0.902 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.181 1.181 21 N -0.234 5.234 22 C -0.104 4.104 23 C -0.198 4.198 24 C -0.191 4.191 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.004 0.996 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.111 -2.256 18.363 19.484 hybrid contribution -0.796 0.441 -1.439 1.703 sum 5.315 -1.815 16.923 17.831 Atomic orbital electron populations 1.23077 0.79342 1.04665 1.00280 1.87962 1.21498 1.26068 1.94117 1.20676 0.98183 0.85623 0.82993 0.87605 1.27030 0.98162 0.86976 1.00860 1.74584 1.21930 1.19945 0.94135 1.85291 1.60718 1.22670 1.30844 1.29585 0.90216 0.87934 0.93215 1.20156 1.00266 0.90027 0.90643 0.86745 1.21736 0.92409 1.02929 1.01555 1.19031 0.92697 0.96798 0.91615 1.21503 1.30876 0.97714 1.06510 0.90202 1.25964 0.95327 0.98349 1.00066 1.70118 1.34336 1.25204 1.27963 0.85418 0.77229 0.79504 0.78744 1.19759 1.21602 1.18084 1.71910 1.23586 1.21431 1.06441 1.21210 0.92731 0.98744 0.97762 1.21782 1.02469 0.94313 1.01239 1.21711 1.03039 1.01266 0.93113 0.90886 0.96335 0.87202 0.89574 0.91206 0.92775 0.99559 0.97885 0.92861 0.91918 0.90817 0.89867 0.95109 0.92095 0.90718 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.87 113.37 1.23 1.72 16 2 O -0.38 -10.40 9.34 -148.98 -1.39 -11.79 16 3 C 0.19 4.99 2.25 29.85 0.07 5.06 16 4 H 0.11 2.49 7.70 -2.38 -0.02 2.47 16 5 C 0.14 5.07 6.09 138.46 0.84 5.91 16 6 N -0.39 -15.64 12.16 -60.31 -0.73 -16.37 16 7 O 0.06 2.44 11.31 74.86 0.85 3.28 16 8 C 0.21 8.31 7.02 88.38 0.62 8.93 16 9 C 0.01 0.37 2.81 -11.54 -0.03 0.34 16 10 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 11 C -0.13 -4.25 8.99 71.98 0.65 -3.60 16 12 C 0.04 1.85 4.43 29.85 0.13 1.98 16 13 C -0.53 -27.64 8.41 25.60 0.22 -27.42 16 14 H 0.08 3.82 7.06 -2.91 -0.02 3.80 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.94 -55.73 13.29 21.44 0.28 -55.44 16 17 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 N -0.50 -18.70 11.55 -303.20 -3.50 -22.20 16 22 C -0.08 -1.87 2.68 -10.79 -0.03 -1.90 16 23 C -0.14 -2.79 9.02 71.98 0.65 -2.15 16 24 C -0.13 -2.13 9.05 71.98 0.65 -1.48 16 25 H 0.07 1.21 7.98 -2.38 -0.02 1.19 16 26 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 2.84 6.95 -2.39 -0.02 2.82 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.26 14.80 8.31 -92.70 -0.77 14.02 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.03 0.76 7.41 -2.39 -0.02 0.74 16 38 H 0.06 1.06 7.41 -2.38 -0.02 1.04 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -65.29 336.10 4.00 -61.30 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.01 Total: 9.14 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.46 Total: -12.10 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -3.95 Total: -94.02 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.55 Total: -8.51 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.29 4.00 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234743318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.118 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds