Wall clock time and date at job start Mon Mar 30 2020 07:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99396 * 2 1 4 4 H 1.09000 * 109.47604 * 327.48873 * 3 2 1 5 5 C 1.50699 * 109.47147 * 87.49016 * 3 2 1 6 6 N 1.29943 * 126.28855 * 45.02235 * 5 3 2 7 7 O 1.21300 * 110.25209 * 179.97438 * 6 5 3 8 8 C 1.33639 * 109.81012 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.55228 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47544 * 269.98084 * 9 8 7 11 11 C 1.50702 * 109.47455 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99731 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99709 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00118 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99508 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47176 * 89.99929 * 15 13 11 17 17 H 1.48502 * 109.46790 * 209.99714 * 15 13 11 18 18 H 1.48497 * 109.47292 * 330.00206 * 15 13 11 19 19 N 1.31126 * 106.89822 * 359.77243 * 8 7 6 20 20 C 1.53001 * 109.46755 * 207.48932 * 3 2 1 21 21 C 1.52997 * 109.47310 * 63.51955 * 20 3 2 22 22 C 1.52996 * 109.47100 * 183.52469 * 20 3 2 23 23 C 1.53005 * 109.46941 * 303.51977 * 20 3 2 24 24 H 1.09002 * 109.46618 * 184.70254 * 1 2 3 25 25 H 1.08999 * 109.47425 * 304.70611 * 1 2 3 26 26 H 1.09007 * 109.47011 * 64.71023 * 1 2 3 27 27 H 1.09010 * 109.46860 * 29.98036 * 9 8 7 28 28 H 1.09005 * 109.47378 * 149.97453 * 9 8 7 29 29 H 1.09001 * 109.47003 * 300.00171 * 10 9 8 30 30 H 1.09005 * 109.47298 * 59.99321 * 10 9 8 31 31 H 0.97007 * 119.99275 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.46722 * 55.24445 * 21 20 3 33 33 H 1.09002 * 109.47265 * 175.24146 * 21 20 3 34 34 H 1.08999 * 109.47309 * 295.24461 * 21 20 3 35 35 H 1.08998 * 109.47806 * 59.99382 * 22 20 3 36 36 H 1.09003 * 109.47529 * 180.02562 * 22 20 3 37 37 H 1.09004 * 109.47109 * 299.99884 * 22 20 3 38 38 H 1.08996 * 109.47008 * 60.00292 * 23 20 3 39 39 H 1.09003 * 109.46688 * 180.02562 * 23 20 3 40 40 H 1.09003 * 109.47245 * 299.99871 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3662 1.9900 -0.5523 5 6 2.1575 1.7898 1.4194 6 7 2.6153 1.1026 2.4228 7 8 2.6075 1.7763 3.4315 8 6 2.1299 2.9943 3.1590 9 6 1.9562 4.1293 4.1350 10 6 0.5615 4.0560 4.7596 11 6 0.3880 5.1907 5.7362 12 1 1.1920 5.8940 5.8950 13 6 -0.7975 5.3313 6.4259 14 7 -1.7771 4.4757 6.2312 15 14 -1.0128 6.7383 7.6358 16 1 -1.5720 7.9182 6.9285 17 1 -1.9419 6.3232 8.7173 18 1 0.3044 7.0918 8.2233 19 7 1.8455 3.0146 1.8791 20 6 3.3866 1.2510 -0.6659 21 6 3.2281 0.8439 -2.1321 22 6 4.0459 2.6294 -0.5876 23 6 4.2622 0.2252 0.0565 24 1 -0.3632 -1.0243 0.0843 25 1 -0.3634 0.5851 0.8448 26 1 -0.3633 0.4390 -0.9292 27 1 2.7098 4.0530 4.9189 28 1 2.0708 5.0789 3.6123 29 1 -0.1921 4.1323 3.9758 30 1 0.4469 3.1064 5.2824 31 1 -2.6110 4.5746 6.7169 32 1 2.5368 1.5267 -2.6260 33 1 4.1978 0.8869 -2.6280 34 1 2.8367 -0.1720 -2.1869 35 1 4.1588 2.9196 0.4569 36 1 5.0263 2.5908 -1.0624 37 1 3.4220 3.3603 -1.1022 38 1 3.7926 -0.7568 0.0008 39 1 5.2430 0.1867 -0.4176 40 1 4.3752 0.5153 1.1012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234753978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:10 Heat of formation + Delta-G solvation = -0.981401 kcal Electronic energy + Delta-G solvation = -21028.794857 eV Core-core repulsion = 17846.622710 eV Total energy + Delta-G solvation = -3182.172147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.13543 -39.24061 -36.07734 -35.36025 -34.25849 -32.44543 -30.22225 -27.99436 -27.49121 -27.32049 -25.89639 -25.78572 -23.25554 -22.09701 -20.67879 -19.10773 -17.65817 -17.23761 -16.60165 -16.27622 -15.73394 -15.54354 -14.56655 -14.21139 -14.08126 -13.81041 -13.76737 -13.25597 -12.76079 -12.46934 -12.33708 -12.22960 -11.92388 -11.73123 -11.62559 -11.58695 -11.32933 -11.02557 -10.96013 -10.87453 -10.79560 -10.62279 -10.54461 -10.14803 -10.04005 -9.96008 -9.34406 -9.16911 -8.46816 -6.11174 -4.15944 1.62235 2.58662 3.27655 3.33334 3.35622 3.39054 3.44001 3.89740 4.37728 4.53197 4.60482 4.71470 4.90635 5.12796 5.25128 5.25600 5.32415 5.39504 5.49901 5.55793 5.59950 5.63858 5.68609 5.82301 5.88610 5.93972 5.97662 6.03727 6.08949 6.21661 6.26375 6.35785 6.43267 6.61306 6.96125 7.47220 7.54131 7.84334 8.19826 8.62094 8.89334 9.49152 11.00096 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.003963 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.287447 B = 7063.739891 C = 7383.243684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.194 3.806 4 H 0.089 0.911 5 C 0.139 3.861 6 N -0.372 5.372 7 O 0.068 5.932 8 C 0.210 3.790 9 C -0.028 4.028 10 C 0.028 3.972 11 C -0.526 4.526 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.492 5.492 20 C -0.059 4.059 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.140 4.140 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.953 -6.389 -14.331 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.281 6.281 3 C 0.134 3.866 4 H 0.107 0.893 5 C -0.135 4.135 6 N -0.082 5.082 7 O 0.010 5.990 8 C -0.009 4.009 9 C -0.067 4.067 10 C -0.010 4.010 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.227 5.227 20 C -0.060 4.060 21 C -0.193 4.193 22 C -0.197 4.197 23 C -0.197 4.197 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.003 -7.277 -14.747 18.748 hybrid contribution -0.627 1.044 0.940 1.538 sum 8.377 -6.234 -13.807 17.311 Atomic orbital electron populations 1.22879 0.80601 1.03075 1.00431 1.87964 1.20001 1.25815 1.94351 1.20299 0.96027 0.85080 0.85234 0.89317 1.26229 1.00061 0.87905 0.99296 1.74577 1.20857 1.18766 0.93990 1.85306 1.60921 1.21887 1.30866 1.29605 0.90387 0.88496 0.92374 1.20740 1.03676 0.89059 0.93242 1.19151 0.87698 0.98375 0.95789 1.21072 1.00162 1.11750 1.23434 0.92020 1.25009 0.95823 0.96354 0.97022 1.69970 1.04855 1.36108 1.42056 0.86508 0.78159 0.82154 0.80694 1.20547 1.21168 1.19672 1.71911 1.23090 1.19839 1.07815 1.20596 0.92420 0.97039 0.95910 1.21802 1.01838 1.02024 0.93644 1.21839 1.00467 0.95083 1.02287 1.21839 0.98300 0.99016 1.00533 0.89231 0.93773 0.93583 0.89133 0.88266 0.95611 0.95831 0.92751 0.92651 0.92191 0.91694 0.92728 0.91871 0.92016 0.91614 0.92874 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.79 101.05 1.09 1.41 16 2 O -0.36 -5.14 9.08 -35.23 -0.32 -5.46 16 3 C 0.19 2.74 1.93 -27.88 -0.05 2.68 16 4 H 0.09 1.18 7.86 -51.93 -0.41 0.77 16 5 C 0.14 2.41 5.05 -156.38 -0.79 1.62 16 6 N -0.37 -6.89 10.49 30.90 0.32 -6.57 16 7 O 0.07 1.29 11.31 18.11 0.20 1.49 16 8 C 0.21 4.01 7.77 -13.06 -0.10 3.91 16 9 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 10 C 0.03 0.69 4.95 -27.89 -0.14 0.55 16 11 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 15 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.49 -9.28 11.54 -9.87 -0.11 -9.39 16 20 C -0.06 -0.70 0.63 -154.51 -0.10 -0.79 16 21 C -0.14 -1.28 8.30 37.16 0.31 -0.97 16 22 C -0.14 -1.61 8.18 37.16 0.30 -1.30 16 23 C -0.14 -1.74 8.01 37.16 0.30 -1.44 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.62 8.04 -51.93 -0.42 0.20 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 35 H 0.05 0.75 7.10 -51.93 -0.37 0.38 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.85 7.59 -51.93 -0.39 0.45 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.90 6.18 -51.93 -0.32 0.58 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -29.91 332.83 -5.44 -35.35 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.51 Total: -3.12 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 0.25 Total: -7.79 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.95 Total: -41.28 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.12 Total: -3.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.91 -5.44 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234753978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.371 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds