Wall clock time and date at job start Mon Mar 30 2020 07:43:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42904 * 113.99396 * 2 1
4 4 H 1.09000 * 109.47604 * 327.48873 * 3 2 1
5 5 C 1.50699 * 109.47147 * 87.49016 * 3 2 1
6 6 N 1.29943 * 126.28855 * 45.02235 * 5 3 2
7 7 O 1.21300 * 110.25209 * 179.97438 * 6 5 3
8 8 C 1.33639 * 109.81012 * 359.97438 * 7 6 5
9 9 C 1.50703 * 126.55228 * 179.97438 * 8 7 6
10 10 C 1.52994 * 109.47544 * 269.98084 * 9 8 7
11 11 C 1.50702 * 109.47455 * 179.97438 * 10 9 8
12 12 H 1.08001 * 119.99731 * 0.02562 * 11 10 9
13 13 C 1.37878 * 119.99709 * 179.97438 * 11 10 9
14 14 N 1.31510 * 120.00118 * 359.97438 * 13 11 10
15 15 Si 1.86807 * 119.99508 * 180.02562 * 13 11 10
16 16 H 1.48498 * 109.47176 * 89.99929 * 15 13 11
17 17 H 1.48502 * 109.46790 * 209.99714 * 15 13 11
18 18 H 1.48497 * 109.47292 * 330.00206 * 15 13 11
19 19 N 1.31126 * 106.89822 * 359.77243 * 8 7 6
20 20 C 1.53001 * 109.46755 * 207.48932 * 3 2 1
21 21 C 1.52997 * 109.47310 * 63.51955 * 20 3 2
22 22 C 1.52996 * 109.47100 * 183.52469 * 20 3 2
23 23 C 1.53005 * 109.46941 * 303.51977 * 20 3 2
24 24 H 1.09002 * 109.46618 * 184.70254 * 1 2 3
25 25 H 1.08999 * 109.47425 * 304.70611 * 1 2 3
26 26 H 1.09007 * 109.47011 * 64.71023 * 1 2 3
27 27 H 1.09010 * 109.46860 * 29.98036 * 9 8 7
28 28 H 1.09005 * 109.47378 * 149.97453 * 9 8 7
29 29 H 1.09001 * 109.47003 * 300.00171 * 10 9 8
30 30 H 1.09005 * 109.47298 * 59.99321 * 10 9 8
31 31 H 0.97007 * 119.99275 * 179.97438 * 14 13 11
32 32 H 1.08997 * 109.46722 * 55.24445 * 21 20 3
33 33 H 1.09002 * 109.47265 * 175.24146 * 21 20 3
34 34 H 1.08999 * 109.47309 * 295.24461 * 21 20 3
35 35 H 1.08998 * 109.47806 * 59.99382 * 22 20 3
36 36 H 1.09003 * 109.47529 * 180.02562 * 22 20 3
37 37 H 1.09004 * 109.47109 * 299.99884 * 22 20 3
38 38 H 1.08996 * 109.47008 * 60.00292 * 23 20 3
39 39 H 1.09003 * 109.46688 * 180.02562 * 23 20 3
40 40 H 1.09003 * 109.47245 * 299.99871 * 23 20 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3056 0.0000
4 1 1.3662 1.9900 -0.5523
5 6 2.1575 1.7898 1.4194
6 7 2.6153 1.1026 2.4228
7 8 2.6075 1.7763 3.4315
8 6 2.1299 2.9943 3.1590
9 6 1.9562 4.1293 4.1350
10 6 0.5615 4.0560 4.7596
11 6 0.3880 5.1907 5.7362
12 1 1.1920 5.8940 5.8950
13 6 -0.7975 5.3313 6.4259
14 7 -1.7771 4.4757 6.2312
15 14 -1.0128 6.7383 7.6358
16 1 -1.5720 7.9182 6.9285
17 1 -1.9419 6.3232 8.7173
18 1 0.3044 7.0918 8.2233
19 7 1.8455 3.0146 1.8791
20 6 3.3866 1.2510 -0.6659
21 6 3.2281 0.8439 -2.1321
22 6 4.0459 2.6294 -0.5876
23 6 4.2622 0.2252 0.0565
24 1 -0.3632 -1.0243 0.0843
25 1 -0.3634 0.5851 0.8448
26 1 -0.3633 0.4390 -0.9292
27 1 2.7098 4.0530 4.9189
28 1 2.0708 5.0789 3.6123
29 1 -0.1921 4.1323 3.9758
30 1 0.4469 3.1064 5.2824
31 1 -2.6110 4.5746 6.7169
32 1 2.5368 1.5267 -2.6260
33 1 4.1978 0.8869 -2.6280
34 1 2.8367 -0.1720 -2.1869
35 1 4.1588 2.9196 0.4569
36 1 5.0263 2.5908 -1.0624
37 1 3.4220 3.3603 -1.1022
38 1 3.7926 -0.7568 0.0008
39 1 5.2430 0.1867 -0.4176
40 1 4.3752 0.5153 1.1012
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000234753978.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:43:10
Heat of formation + Delta-G solvation = -20.587934 kcal
Electronic energy + Delta-G solvation = -21029.645060 eV
Core-core repulsion = 17846.622710 eV
Total energy + Delta-G solvation = -3183.022350 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-46.59677 -40.29823 -37.14658 -36.83534 -35.96112 -34.25933 -31.94180 -29.09017
-28.44019 -28.19593 -27.67349 -26.92597 -24.80141 -23.76953 -22.20003 -20.16216
-19.13200 -18.75941 -18.31800 -17.56562 -16.83988 -16.67884 -16.49631 -15.69467
-15.21912 -15.07211 -14.68930 -14.64935 -14.30695 -13.83516 -13.58332 -13.39165
-13.23445 -12.91692 -12.84763 -12.81038 -12.59568 -12.57523 -12.55094 -12.14665
-12.02139 -11.92576 -11.82713 -11.72638 -11.59051 -11.35218 -11.07404 -10.76244
-10.57442 -8.21121 -6.33298 0.13181 1.15595 1.46035 1.46796 1.58037
1.87159 2.32337 2.43938 2.66940 3.14494 3.18242 3.61698 3.67368
3.96443 4.09791 4.19378 4.30071 4.38505 4.41178 4.48841 4.51938
4.60953 4.66627 4.70532 4.77135 4.84791 4.90851 4.94225 4.98291
4.99393 5.09282 5.19311 5.39079 5.41976 5.42926 5.51598 5.76603
5.90349 6.12232 6.82359 7.14966 7.37133 8.91377
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.033274 B = 0.003963 C = 0.003791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.287447 B = 7063.739891 C = 7383.243684
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.373 6.373
3 C 0.189 3.811
4 H 0.098 0.902
5 C 0.146 3.854
6 N -0.384 5.384
7 O 0.057 5.943
8 C 0.204 3.796
9 C -0.013 4.013
10 C 0.035 3.965
11 C -0.539 4.539
12 H 0.079 0.921
13 C 0.000 4.000
14 N -0.936 5.936
15 Si 0.970 3.030
16 H -0.273 1.273
17 H -0.287 1.287
18 H -0.256 1.256
19 N -0.502 5.502
20 C -0.057 4.057
21 C -0.130 4.130
22 C -0.136 4.136
23 C -0.136 4.136
24 H 0.108 0.892
25 H 0.017 0.983
26 H 0.070 0.930
27 H 0.114 0.886
28 H 0.114 0.886
29 H -0.007 1.007
30 H -0.005 1.005
31 H 0.264 0.736
32 H 0.065 0.935
33 H 0.078 0.922
34 H 0.062 0.938
35 H 0.026 0.974
36 H 0.084 0.916
37 H 0.067 0.933
38 H 0.057 0.943
39 H 0.074 0.926
40 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.080 -5.596 -15.460 19.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.290 6.290
3 C 0.128 3.872
4 H 0.115 0.885
5 C -0.128 4.128
6 N -0.096 5.096
7 O 0.003 5.997
8 C -0.015 4.015
9 C -0.052 4.052
10 C -0.004 4.004
11 C -0.577 4.577
12 H 0.097 0.903
13 C -0.198 4.198
14 N -0.575 5.575
15 Si 0.794 3.206
16 H -0.199 1.199
17 H -0.213 1.213
18 H -0.180 1.180
19 N -0.237 5.237
20 C -0.058 4.058
21 C -0.187 4.187
22 C -0.193 4.193
23 C -0.193 4.193
24 H 0.126 0.874
25 H 0.035 0.965
26 H 0.089 0.911
27 H 0.132 0.868
28 H 0.133 0.867
29 H 0.012 0.988
30 H 0.014 0.986
31 H 0.072 0.928
32 H 0.084 0.916
33 H 0.097 0.903
34 H 0.081 0.919
35 H 0.046 0.954
36 H 0.103 0.897
37 H 0.086 0.914
38 H 0.076 0.924
39 H 0.093 0.907
40 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 10.152 -6.482 -15.868 19.921
hybrid contribution -0.993 0.728 1.233 1.743
sum 9.159 -5.754 -14.635 18.198
Atomic orbital electron populations
1.23033 0.79698 1.04067 1.00526 1.87960 1.21040 1.25779 1.94195
1.20658 0.97791 0.85278 0.83445 0.88458 1.26886 0.98377 0.87117
1.00408 1.74578 1.21810 1.19006 0.94235 1.85287 1.61257 1.21882
1.31312 1.29537 0.90810 0.88581 0.92603 1.20506 1.00892 0.89889
0.93912 1.18937 0.90156 0.96647 0.94630 1.21569 1.00602 1.12202
1.23288 0.90316 1.26001 0.95583 0.99063 0.99109 1.70119 1.05533
1.38366 1.43530 0.85368 0.78620 0.78591 0.78003 1.19898 1.21325
1.17978 1.71914 1.23117 1.20811 1.07868 1.20673 0.90748 0.97123
0.97272 1.21766 1.03224 1.02048 0.91629 1.21830 1.01820 0.94908
1.00789 1.21799 0.99590 0.98665 0.99254 0.87414 0.96462 0.91107
0.86787 0.86737 0.98847 0.98635 0.92770 0.91642 0.90346 0.91883
0.95430 0.89684 0.91425 0.92391 0.90716 0.94627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.53 10.79 113.37 1.22 1.75 16
2 O -0.37 -10.20 9.08 -148.98 -1.35 -11.56 16
3 C 0.19 5.17 1.93 29.85 0.06 5.22 16
4 H 0.10 2.47 7.86 -2.39 -0.02 2.45 16
5 C 0.15 5.09 5.05 138.46 0.70 5.79 16
6 N -0.38 -14.50 10.49 -60.34 -0.63 -15.13 16
7 O 0.06 2.23 11.31 74.87 0.85 3.07 16
8 C 0.20 7.87 7.77 88.38 0.69 8.56 16
9 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16
10 C 0.03 1.75 4.95 29.85 0.15 1.89 16
11 C -0.54 -28.64 9.11 25.60 0.23 -28.41 16
12 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16
13 C 0.00 0.03 5.46 84.66 0.46 0.49 16
14 N -0.94 -55.91 13.29 21.45 0.28 -55.62 16
15 Si 0.97 42.41 29.54 68.60 2.03 44.43 16
16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16
18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16
19 N -0.50 -19.08 11.54 -303.22 -3.50 -22.58 16
20 C -0.06 -1.26 0.63 -52.18 -0.03 -1.29 16
21 C -0.13 -2.06 8.30 71.98 0.60 -1.47 16
22 C -0.14 -2.89 8.18 71.98 0.59 -2.30 16
23 C -0.14 -3.22 8.01 71.98 0.58 -2.64 16
24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16
25 H 0.02 0.48 8.04 -2.39 -0.02 0.46 16
26 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16
27 H 0.11 3.80 8.14 -2.38 -0.02 3.78 16
28 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16
29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
30 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16
31 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16
32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
34 H 0.06 1.05 7.91 -2.39 -0.02 1.03 16
35 H 0.03 0.72 7.10 -2.39 -0.02 0.71 16
36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
38 H 0.06 1.44 7.59 -2.39 -0.02 1.42 16
39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.03 1.02 6.18 -2.39 -0.01 1.01 16
Total: -1.00 -65.35 332.83 4.09 -61.26
By element:
Atomic # 1 Polarization: 7.85 SS G_CDS: 1.01 Total: 8.85 kcal
Atomic # 6 Polarization: -18.15 SS G_CDS: 5.41 Total: -12.73 kcal
Atomic # 7 Polarization: -89.49 SS G_CDS: -3.85 Total: -93.33 kcal
Atomic # 8 Polarization: -7.98 SS G_CDS: -0.51 Total: -8.48 kcal
Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal
Total: -65.35 4.09 -61.26 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000234753978.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.674 kcal
(2) G-P(sol) polarization free energy of solvation -65.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds