Wall clock time and date at job start Mon Mar 30 2020 07:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99396 * 2 1 4 4 H 1.09000 * 109.47604 * 327.48873 * 3 2 1 5 5 C 1.50699 * 109.47147 * 87.49016 * 3 2 1 6 6 N 1.29943 * 126.28855 * 45.02235 * 5 3 2 7 7 O 1.21300 * 110.25209 * 179.97438 * 6 5 3 8 8 C 1.33639 * 109.81012 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.55228 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47544 * 269.98084 * 9 8 7 11 11 C 1.50702 * 109.47455 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99731 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99709 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00118 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99508 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47176 * 89.99929 * 15 13 11 17 17 H 1.48502 * 109.46790 * 209.99714 * 15 13 11 18 18 H 1.48497 * 109.47292 * 330.00206 * 15 13 11 19 19 N 1.31126 * 106.89822 * 359.77243 * 8 7 6 20 20 C 1.53001 * 109.46755 * 207.48932 * 3 2 1 21 21 C 1.52997 * 109.47310 * 63.51955 * 20 3 2 22 22 C 1.52996 * 109.47100 * 183.52469 * 20 3 2 23 23 C 1.53005 * 109.46941 * 303.51977 * 20 3 2 24 24 H 1.09002 * 109.46618 * 184.70254 * 1 2 3 25 25 H 1.08999 * 109.47425 * 304.70611 * 1 2 3 26 26 H 1.09007 * 109.47011 * 64.71023 * 1 2 3 27 27 H 1.09010 * 109.46860 * 29.98036 * 9 8 7 28 28 H 1.09005 * 109.47378 * 149.97453 * 9 8 7 29 29 H 1.09001 * 109.47003 * 300.00171 * 10 9 8 30 30 H 1.09005 * 109.47298 * 59.99321 * 10 9 8 31 31 H 0.97007 * 119.99275 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.46722 * 55.24445 * 21 20 3 33 33 H 1.09002 * 109.47265 * 175.24146 * 21 20 3 34 34 H 1.08999 * 109.47309 * 295.24461 * 21 20 3 35 35 H 1.08998 * 109.47806 * 59.99382 * 22 20 3 36 36 H 1.09003 * 109.47529 * 180.02562 * 22 20 3 37 37 H 1.09004 * 109.47109 * 299.99884 * 22 20 3 38 38 H 1.08996 * 109.47008 * 60.00292 * 23 20 3 39 39 H 1.09003 * 109.46688 * 180.02562 * 23 20 3 40 40 H 1.09003 * 109.47245 * 299.99871 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3662 1.9900 -0.5523 5 6 2.1575 1.7898 1.4194 6 7 2.6153 1.1026 2.4228 7 8 2.6075 1.7763 3.4315 8 6 2.1299 2.9943 3.1590 9 6 1.9562 4.1293 4.1350 10 6 0.5615 4.0560 4.7596 11 6 0.3880 5.1907 5.7362 12 1 1.1920 5.8940 5.8950 13 6 -0.7975 5.3313 6.4259 14 7 -1.7771 4.4757 6.2312 15 14 -1.0128 6.7383 7.6358 16 1 -1.5720 7.9182 6.9285 17 1 -1.9419 6.3232 8.7173 18 1 0.3044 7.0918 8.2233 19 7 1.8455 3.0146 1.8791 20 6 3.3866 1.2510 -0.6659 21 6 3.2281 0.8439 -2.1321 22 6 4.0459 2.6294 -0.5876 23 6 4.2622 0.2252 0.0565 24 1 -0.3632 -1.0243 0.0843 25 1 -0.3634 0.5851 0.8448 26 1 -0.3633 0.4390 -0.9292 27 1 2.7098 4.0530 4.9189 28 1 2.0708 5.0789 3.6123 29 1 -0.1921 4.1323 3.9758 30 1 0.4469 3.1064 5.2824 31 1 -2.6110 4.5746 6.7169 32 1 2.5368 1.5267 -2.6260 33 1 4.1978 0.8869 -2.6280 34 1 2.8367 -0.1720 -2.1869 35 1 4.1588 2.9196 0.4569 36 1 5.0263 2.5908 -1.0624 37 1 3.4220 3.3603 -1.1022 38 1 3.7926 -0.7568 0.0008 39 1 5.2430 0.1867 -0.4176 40 1 4.3752 0.5153 1.1012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234753978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:10 Heat of formation + Delta-G solvation = -20.587934 kcal Electronic energy + Delta-G solvation = -21029.645060 eV Core-core repulsion = 17846.622710 eV Total energy + Delta-G solvation = -3183.022350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.59677 -40.29823 -37.14658 -36.83534 -35.96112 -34.25933 -31.94180 -29.09017 -28.44019 -28.19593 -27.67349 -26.92597 -24.80141 -23.76953 -22.20003 -20.16216 -19.13200 -18.75941 -18.31800 -17.56562 -16.83988 -16.67884 -16.49631 -15.69467 -15.21912 -15.07211 -14.68930 -14.64935 -14.30695 -13.83516 -13.58332 -13.39165 -13.23445 -12.91692 -12.84763 -12.81038 -12.59568 -12.57523 -12.55094 -12.14665 -12.02139 -11.92576 -11.82713 -11.72638 -11.59051 -11.35218 -11.07404 -10.76244 -10.57442 -8.21121 -6.33298 0.13181 1.15595 1.46035 1.46796 1.58037 1.87159 2.32337 2.43938 2.66940 3.14494 3.18242 3.61698 3.67368 3.96443 4.09791 4.19378 4.30071 4.38505 4.41178 4.48841 4.51938 4.60953 4.66627 4.70532 4.77135 4.84791 4.90851 4.94225 4.98291 4.99393 5.09282 5.19311 5.39079 5.41976 5.42926 5.51598 5.76603 5.90349 6.12232 6.82359 7.14966 7.37133 8.91377 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.003963 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.287447 B = 7063.739891 C = 7383.243684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.373 6.373 3 C 0.189 3.811 4 H 0.098 0.902 5 C 0.146 3.854 6 N -0.384 5.384 7 O 0.057 5.943 8 C 0.204 3.796 9 C -0.013 4.013 10 C 0.035 3.965 11 C -0.539 4.539 12 H 0.079 0.921 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.256 1.256 19 N -0.502 5.502 20 C -0.057 4.057 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.108 0.892 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.114 0.886 29 H -0.007 1.007 30 H -0.005 1.005 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 -5.596 -15.460 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C 0.128 3.872 4 H 0.115 0.885 5 C -0.128 4.128 6 N -0.096 5.096 7 O 0.003 5.997 8 C -0.015 4.015 9 C -0.052 4.052 10 C -0.004 4.004 11 C -0.577 4.577 12 H 0.097 0.903 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.180 1.180 19 N -0.237 5.237 20 C -0.058 4.058 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.193 4.193 24 H 0.126 0.874 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.152 -6.482 -15.868 19.921 hybrid contribution -0.993 0.728 1.233 1.743 sum 9.159 -5.754 -14.635 18.198 Atomic orbital electron populations 1.23033 0.79698 1.04067 1.00526 1.87960 1.21040 1.25779 1.94195 1.20658 0.97791 0.85278 0.83445 0.88458 1.26886 0.98377 0.87117 1.00408 1.74578 1.21810 1.19006 0.94235 1.85287 1.61257 1.21882 1.31312 1.29537 0.90810 0.88581 0.92603 1.20506 1.00892 0.89889 0.93912 1.18937 0.90156 0.96647 0.94630 1.21569 1.00602 1.12202 1.23288 0.90316 1.26001 0.95583 0.99063 0.99109 1.70119 1.05533 1.38366 1.43530 0.85368 0.78620 0.78591 0.78003 1.19898 1.21325 1.17978 1.71914 1.23117 1.20811 1.07868 1.20673 0.90748 0.97123 0.97272 1.21766 1.03224 1.02048 0.91629 1.21830 1.01820 0.94908 1.00789 1.21799 0.99590 0.98665 0.99254 0.87414 0.96462 0.91107 0.86787 0.86737 0.98847 0.98635 0.92770 0.91642 0.90346 0.91883 0.95430 0.89684 0.91425 0.92391 0.90716 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.79 113.37 1.22 1.75 16 2 O -0.37 -10.20 9.08 -148.98 -1.35 -11.56 16 3 C 0.19 5.17 1.93 29.85 0.06 5.22 16 4 H 0.10 2.47 7.86 -2.39 -0.02 2.45 16 5 C 0.15 5.09 5.05 138.46 0.70 5.79 16 6 N -0.38 -14.50 10.49 -60.34 -0.63 -15.13 16 7 O 0.06 2.23 11.31 74.87 0.85 3.07 16 8 C 0.20 7.87 7.77 88.38 0.69 8.56 16 9 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16 10 C 0.03 1.75 4.95 29.85 0.15 1.89 16 11 C -0.54 -28.64 9.11 25.60 0.23 -28.41 16 12 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.94 -55.91 13.29 21.45 0.28 -55.62 16 15 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 N -0.50 -19.08 11.54 -303.22 -3.50 -22.58 16 20 C -0.06 -1.26 0.63 -52.18 -0.03 -1.29 16 21 C -0.13 -2.06 8.30 71.98 0.60 -1.47 16 22 C -0.14 -2.89 8.18 71.98 0.59 -2.30 16 23 C -0.14 -3.22 8.01 71.98 0.58 -2.64 16 24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.02 0.48 8.04 -2.39 -0.02 0.46 16 26 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 27 H 0.11 3.80 8.14 -2.38 -0.02 3.78 16 28 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.05 7.91 -2.39 -0.02 1.03 16 35 H 0.03 0.72 7.10 -2.39 -0.02 0.71 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.44 7.59 -2.39 -0.02 1.42 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 1.02 6.18 -2.39 -0.01 1.01 16 Total: -1.00 -65.35 332.83 4.09 -61.26 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.01 Total: 8.85 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.41 Total: -12.73 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -3.85 Total: -93.33 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.51 Total: -8.48 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -65.35 4.09 -61.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234753978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.674 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds