Wall clock time and date at job start Mon Mar 30 2020 07:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 H 1.09004 * 109.46944 * 31.47608 * 3 2 1 5 5 C 1.50698 * 109.47022 * 151.46713 * 3 2 1 6 6 N 1.29942 * 126.28562 * 44.98409 * 5 3 2 7 7 O 1.21301 * 110.25174 * 179.97438 * 6 5 3 8 8 C 1.33641 * 109.81144 * 359.97438 * 7 6 5 9 9 C 1.50705 * 126.55048 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47441 * 270.02267 * 9 8 7 11 11 H 1.08994 * 109.47072 * 305.00595 * 10 9 8 12 12 C 1.53008 * 109.46631 * 65.00453 * 10 9 8 13 13 C 1.50691 * 109.47255 * 184.99856 * 10 9 8 14 14 H 1.08003 * 120.00404 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00030 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99870 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00018 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47034 * 90.00212 * 17 15 13 19 19 H 1.48490 * 109.47257 * 210.00096 * 17 15 13 20 20 H 1.48499 * 109.47295 * 330.00278 * 17 15 13 21 21 N 1.31129 * 106.89840 * 0.22800 * 8 7 6 22 22 C 1.52999 * 109.47552 * 271.47407 * 3 2 1 23 23 C 1.52995 * 109.47455 * 179.63602 * 22 3 2 24 24 C 1.53002 * 109.46640 * 299.63607 * 22 3 2 25 25 H 1.08996 * 109.47217 * 55.49427 * 1 2 3 26 26 H 1.09001 * 109.46933 * 175.49120 * 1 2 3 27 27 H 1.08994 * 109.47114 * 295.49068 * 1 2 3 28 28 H 1.09003 * 109.46796 * 150.02584 * 9 8 7 29 29 H 1.08997 * 109.46951 * 30.03069 * 9 8 7 30 30 H 1.09007 * 109.46624 * 299.99824 * 12 10 9 31 31 H 1.08993 * 109.47285 * 59.99718 * 12 10 9 32 32 H 1.08997 * 109.47089 * 180.02562 * 12 10 9 33 33 H 0.96999 * 119.99445 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.46806 * 59.62974 * 22 3 2 35 35 H 1.09000 * 109.47372 * 65.67563 * 23 22 3 36 36 H 1.08997 * 109.47713 * 185.67646 * 23 22 3 37 37 H 1.08998 * 109.46988 * 305.67777 * 23 22 3 38 38 H 1.08996 * 109.47540 * 59.99854 * 24 22 3 39 39 H 1.08999 * 109.46995 * 180.02562 * 24 22 3 40 40 H 1.09008 * 109.47090 * 299.99845 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3573 1.9939 0.5366 5 6 3.3548 1.2567 0.6787 6 7 4.2782 0.3616 0.4924 7 8 5.2428 0.6025 1.1874 8 6 5.0197 1.7080 1.9044 9 6 5.9657 2.3449 2.8896 10 6 5.7223 1.7594 4.2820 11 1 4.6722 1.8793 4.5481 12 6 6.0814 0.2721 4.2797 13 6 6.5810 2.4818 5.2878 14 1 7.2347 3.2792 4.9662 15 6 6.5323 2.1249 6.6187 16 7 5.7367 1.1537 7.0103 17 14 7.5962 3.0209 7.8656 18 1 6.8502 4.1853 8.4070 19 1 7.9438 2.0967 8.9747 20 1 8.8403 3.4931 7.2064 21 7 3.8182 2.1296 1.5909 22 6 2.1838 1.7866 -1.4420 23 6 2.7976 3.1880 -1.4417 24 6 3.1076 0.8252 -2.1925 25 1 -0.3633 0.5821 -0.8468 26 1 -0.3633 -1.0245 -0.0808 27 1 -0.3633 0.4422 0.9276 28 1 5.7952 3.4213 2.9132 29 1 6.9937 2.1465 2.5865 30 1 5.4603 -0.2504 3.5521 31 1 7.1316 0.1523 4.0135 32 1 5.9077 -0.1452 5.2715 33 1 5.7021 0.9029 7.9466 34 1 1.2120 1.8156 -1.9347 35 1 3.8101 3.1412 -1.0406 36 1 2.8283 3.5715 -2.4615 37 1 2.1919 3.8498 -0.8228 38 1 2.6703 -0.1732 -2.1927 39 1 3.2317 1.1682 -3.2197 40 1 4.0795 0.7961 -1.6997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234783861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:16 Heat of formation + Delta-G solvation = -15.096542 kcal Electronic energy + Delta-G solvation = -21108.362783 eV Core-core repulsion = 17925.578557 eV Total energy + Delta-G solvation = -3182.784226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.56318 -39.97936 -37.46592 -36.78285 -35.65034 -34.16189 -32.34238 -29.04785 -28.49340 -28.02558 -27.22974 -26.74783 -24.79081 -23.42315 -21.78298 -20.71617 -19.21392 -18.63749 -18.17564 -17.52129 -16.89719 -16.60166 -16.47965 -15.61530 -15.24798 -15.17792 -14.68448 -14.52305 -14.08731 -13.61346 -13.51649 -13.33335 -13.15414 -13.07387 -12.85284 -12.79238 -12.51486 -12.49525 -12.26860 -12.15822 -12.04891 -11.98005 -11.82641 -11.72212 -11.67036 -10.93773 -10.77322 -10.63507 -10.44091 -8.08063 -6.23147 0.18440 1.17216 1.48494 1.49524 1.59453 1.91996 2.23462 2.48191 2.92993 3.22019 3.26090 3.58151 3.76353 4.06624 4.13406 4.27839 4.42430 4.45591 4.50120 4.51763 4.61664 4.65691 4.69639 4.81112 4.82474 4.88152 4.91546 4.97253 5.03537 5.06202 5.10781 5.28642 5.31702 5.36309 5.61272 5.84977 6.01036 6.05004 6.28790 6.87991 7.19477 7.46489 8.97909 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032679 B = 0.004167 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.608939 B = 6717.461530 C = 6946.617104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.184 3.816 4 H 0.099 0.901 5 C 0.169 3.831 6 N -0.385 5.385 7 O 0.061 5.939 8 C 0.211 3.789 9 C -0.015 4.015 10 C 0.050 3.950 11 H -0.005 1.005 12 C -0.129 4.129 13 C -0.528 4.528 14 H 0.073 0.927 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.960 3.040 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.260 1.260 21 N -0.504 5.504 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.008 0.992 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.114 0.886 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 2.344 -16.528 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.124 3.876 4 H 0.116 0.884 5 C -0.105 4.105 6 N -0.096 5.096 7 O 0.006 5.994 8 C -0.009 4.009 9 C -0.054 4.054 10 C 0.031 3.969 11 H 0.014 0.986 12 C -0.187 4.187 13 C -0.566 4.566 14 H 0.091 0.909 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.184 1.184 21 N -0.238 5.238 22 C -0.124 4.124 23 C -0.199 4.199 24 C -0.199 4.199 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.065 0.935 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.067 1.665 -16.916 18.815 hybrid contribution 0.351 0.198 1.295 1.357 sum -7.717 1.863 -15.621 17.522 Atomic orbital electron populations 1.23108 0.78200 1.04525 1.01474 1.87954 1.22403 1.26222 1.95132 1.20380 0.85367 0.86293 0.95565 0.88364 1.25893 0.99629 0.89121 0.95846 1.74584 0.97154 1.23029 1.14852 1.85300 1.34662 1.38505 1.40961 1.29454 0.93469 0.84505 0.93432 1.20641 0.95380 0.99871 0.89511 1.18597 0.95738 0.93120 0.89466 0.98650 1.21721 0.98659 0.98032 1.00313 1.21438 1.24384 1.18392 0.92362 0.90888 1.25788 0.96675 0.95720 1.00566 1.70053 1.39416 1.30107 1.16524 0.85514 0.79411 0.78083 0.78395 1.20381 1.21545 1.18388 1.71874 1.08550 1.28753 1.14673 1.21598 1.02080 0.95976 0.92700 1.21759 0.99765 0.95168 1.03159 1.21766 0.98677 0.99279 1.00150 0.91178 0.87991 0.93518 0.87050 0.86934 0.97301 0.93704 0.92541 0.93077 0.86827 0.95345 0.89898 0.91555 0.92576 0.90768 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.79 113.37 1.22 1.62 16 2 O -0.40 -11.06 9.68 -148.98 -1.44 -12.50 16 3 C 0.18 5.01 2.48 29.85 0.07 5.08 16 4 H 0.10 2.44 7.84 -2.38 -0.02 2.42 16 5 C 0.17 5.99 5.42 138.46 0.75 6.74 16 6 N -0.38 -14.72 10.39 -60.33 -0.63 -15.35 16 7 O 0.06 2.38 10.75 74.86 0.80 3.19 16 8 C 0.21 8.15 6.92 88.38 0.61 8.77 16 9 C -0.02 -0.58 5.26 29.85 0.16 -0.42 16 10 C 0.05 2.44 2.29 -11.54 -0.03 2.42 16 11 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 12 C -0.13 -6.27 8.78 71.98 0.63 -5.64 16 13 C -0.53 -27.16 8.56 25.60 0.22 -26.94 16 14 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 15 C 0.01 0.59 5.30 84.66 0.45 1.04 16 16 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 17 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 N -0.50 -19.43 11.55 -303.21 -3.50 -22.93 16 22 C -0.10 -2.19 2.89 -10.80 -0.03 -2.22 16 23 C -0.14 -2.88 8.84 71.98 0.64 -2.24 16 24 C -0.14 -3.30 8.66 71.98 0.62 -2.67 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 29 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.01 0.38 6.93 -2.38 -0.02 0.36 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.11 1.71 7.69 -2.39 -0.02 1.69 16 35 H 0.03 0.72 7.44 -2.39 -0.02 0.71 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.37 7.69 -2.39 -0.02 1.36 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.03 1.00 6.07 -2.38 -0.01 0.98 16 Total: -1.00 -63.74 327.46 3.84 -59.90 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.02 Total: 10.76 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.32 Total: -14.46 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -3.89 Total: -90.79 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.64 Total: -9.32 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -63.74 3.84 -59.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.802 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds