Wall clock time and date at job start Mon Mar 30 2020 07:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00526 * 2 1 4 4 H 1.09008 * 109.46983 * 31.00391 * 3 2 1 5 5 C 1.50706 * 109.47343 * 150.99722 * 3 2 1 6 6 N 1.29950 * 126.28386 * 44.97674 * 5 3 2 7 7 O 1.21298 * 110.24670 * 179.72607 * 6 5 3 8 8 C 1.33640 * 109.81572 * 0.47259 * 7 6 5 9 9 C 1.50697 * 126.55484 * 179.80197 * 8 7 6 10 10 C 1.52997 * 109.47165 * 269.68427 * 9 8 7 11 11 H 1.09004 * 109.46926 * 55.00041 * 10 9 8 12 12 C 1.53001 * 109.47152 * 295.00027 * 10 9 8 13 13 C 1.50702 * 109.47190 * 174.99545 * 10 9 8 14 14 H 1.07999 * 119.99777 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99981 * 180.02562 * 13 10 9 16 16 N 1.31518 * 120.00139 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00099 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47480 * 89.99864 * 17 15 13 19 19 H 1.48499 * 109.47359 * 209.99941 * 17 15 13 20 20 H 1.48498 * 109.47044 * 329.99805 * 17 15 13 21 21 N 1.31130 * 106.89495 * 359.53634 * 8 7 6 22 22 C 1.52990 * 109.47364 * 270.99985 * 3 2 1 23 23 C 1.53004 * 109.47317 * 178.81567 * 22 3 2 24 24 C 1.53004 * 109.47329 * 298.81626 * 22 3 2 25 25 H 1.09004 * 109.46968 * 295.52498 * 1 2 3 26 26 H 1.09001 * 109.46765 * 55.51793 * 1 2 3 27 27 H 1.08997 * 109.47590 * 175.51779 * 1 2 3 28 28 H 1.09000 * 109.46858 * 29.68606 * 9 8 7 29 29 H 1.08998 * 109.47186 * 149.68390 * 9 8 7 30 30 H 1.08996 * 109.46933 * 299.99851 * 12 10 9 31 31 H 1.09003 * 109.47140 * 59.99791 * 12 10 9 32 32 H 1.08997 * 109.47054 * 179.97438 * 12 10 9 33 33 H 0.97001 * 120.00069 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47423 * 58.81897 * 22 3 2 35 35 H 1.09002 * 109.46752 * 299.99836 * 23 22 3 36 36 H 1.08994 * 109.47268 * 59.99934 * 23 22 3 37 37 H 1.09001 * 109.47123 * 180.02562 * 23 22 3 38 38 H 1.08992 * 109.46875 * 53.85753 * 24 22 3 39 39 H 1.08998 * 109.47300 * 173.86121 * 24 22 3 40 40 H 1.09006 * 109.46858 * 293.85826 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3534 1.9956 0.5294 5 6 3.3499 1.2588 0.6889 6 7 4.2745 0.3629 0.5127 7 8 5.2358 0.6088 1.2104 8 6 5.0047 1.7128 1.9271 9 6 5.9430 2.3526 2.9178 10 6 5.6888 1.7710 4.3099 11 1 5.7725 0.6849 4.2707 12 6 4.2836 2.1578 4.7754 13 6 6.7068 2.3187 5.2767 14 1 7.4596 3.0126 4.9327 15 6 6.6772 1.9340 6.6004 16 7 5.7609 1.0887 7.0192 17 14 7.9386 2.6135 7.7989 18 1 7.4190 3.8639 8.4085 19 1 8.1971 1.6131 8.8655 20 1 9.2027 2.9035 7.0755 21 7 3.8078 2.1364 1.5994 22 6 2.1948 1.7815 -1.4422 23 6 2.7899 3.1911 -1.4417 24 6 3.1403 0.8290 -2.1768 25 1 -0.3633 0.4428 0.9274 26 1 -0.3633 0.5818 -0.8471 27 1 -0.3634 -1.0245 -0.0803 28 1 6.9733 2.1532 2.6233 29 1 5.7724 3.4289 2.9370 30 1 4.1999 3.2438 4.8145 31 1 3.5472 1.7616 4.0760 32 1 4.1023 1.7431 5.7669 33 1 5.7398 0.8184 7.9505 34 1 1.2287 1.7953 -1.9467 35 1 2.1162 3.8697 -0.9184 36 1 3.7559 3.1775 -0.9372 37 1 2.9209 3.5305 -2.4692 38 1 2.7717 -0.1924 -2.0835 39 1 3.1865 1.1038 -3.2305 40 1 4.1365 0.8971 -1.7396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234783972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:20 Heat of formation + Delta-G solvation = 4.700499 kcal Electronic energy + Delta-G solvation = -21132.911799 eV Core-core repulsion = 17950.986037 eV Total energy + Delta-G solvation = -3181.925762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.09167 -38.95123 -35.86210 -35.42559 -34.32980 -32.42100 -30.60748 -28.04804 -27.33178 -26.52561 -25.83289 -25.16519 -23.29127 -22.06276 -20.30753 -19.27964 -17.70758 -17.11078 -16.59275 -16.21414 -15.76429 -15.50691 -14.66672 -14.40973 -14.11003 -13.72052 -13.20068 -13.05243 -12.73895 -12.50812 -12.26722 -12.14721 -11.68757 -11.64135 -11.52942 -11.25800 -11.10663 -11.00633 -10.90240 -10.82125 -10.65174 -10.52945 -10.16818 -9.99768 -9.89216 -9.72599 -9.09780 -8.92679 -8.39964 -6.04627 -4.13274 1.67491 2.59953 3.28835 3.32601 3.35845 3.37843 3.46771 4.09540 4.39163 4.57330 4.59721 4.81060 5.00380 5.05643 5.18912 5.26863 5.31119 5.43656 5.52769 5.57797 5.65583 5.78841 5.87543 5.91411 6.00517 6.09305 6.19225 6.23500 6.32973 6.47932 6.56833 6.92866 6.94312 7.14383 7.26237 7.64642 7.85517 8.06622 8.30910 8.67057 8.89226 9.52313 11.01456 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034336 B = 0.004190 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.264489 B = 6681.152124 C = 6991.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.189 3.811 4 H 0.089 0.911 5 C 0.165 3.835 6 N -0.371 5.371 7 O 0.068 5.932 8 C 0.215 3.785 9 C -0.026 4.026 10 C 0.050 3.950 11 H 0.032 0.968 12 C -0.137 4.137 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 N -0.487 5.487 22 C -0.111 4.111 23 C -0.145 4.145 24 C -0.143 4.143 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.010 0.990 32 H 0.082 0.918 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 1.781 -15.123 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.129 3.871 4 H 0.107 0.893 5 C -0.108 4.108 6 N -0.081 5.081 7 O 0.010 5.990 8 C -0.004 4.004 9 C -0.065 4.065 10 C 0.030 3.970 11 H 0.050 0.950 12 C -0.194 4.194 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.221 5.221 22 C -0.130 4.130 23 C -0.202 4.202 24 C -0.200 4.200 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.363 1.102 -15.508 17.653 hybrid contribution 0.443 0.526 0.910 1.141 sum -7.921 1.628 -14.597 16.687 Atomic orbital electron populations 1.22855 0.80476 1.03070 1.00252 1.87989 1.19901 1.26141 1.94888 1.20065 0.87151 0.85848 0.94041 0.89296 1.25181 0.98544 0.90131 0.96968 1.74602 0.96901 1.22288 1.14316 1.85305 1.34317 1.38757 1.40590 1.29513 0.93239 0.84471 0.93186 1.20829 0.94079 0.99642 0.91981 1.18728 0.94824 0.96568 0.86856 0.95032 1.21817 0.96201 0.99040 1.02392 1.21028 1.13632 1.27544 0.93364 0.92132 1.24950 0.95730 0.94846 0.98308 1.69904 1.33644 1.32741 1.16185 0.86541 0.81688 0.78673 0.80776 1.20652 1.21246 1.19776 1.71901 1.08711 1.27767 1.13715 1.21565 1.00634 0.96309 0.94508 1.21781 1.01518 0.95071 1.01840 1.21783 0.99668 0.99623 0.98969 0.93632 0.93773 0.89240 0.89157 0.88362 0.95175 0.97110 0.89962 0.92862 0.90017 0.92171 0.92504 0.92172 0.91638 0.92963 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.79 101.05 1.09 1.39 16 2 O -0.37 -5.36 9.61 -35.23 -0.34 -5.70 16 3 C 0.19 2.68 2.48 -27.88 -0.07 2.61 16 4 H 0.09 1.17 7.84 -51.92 -0.41 0.76 16 5 C 0.17 2.92 5.33 -156.37 -0.83 2.09 16 6 N -0.37 -7.03 10.52 30.90 0.33 -6.70 16 7 O 0.07 1.32 11.31 18.11 0.20 1.52 16 8 C 0.21 4.13 6.97 -13.06 -0.09 4.04 16 9 C -0.03 -0.50 5.26 -27.89 -0.15 -0.65 16 10 C 0.05 1.19 2.29 -91.77 -0.21 0.98 16 11 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.14 -3.31 8.78 37.16 0.33 -2.98 16 13 C -0.52 -13.41 8.56 -34.44 -0.29 -13.71 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 17 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.49 -9.24 10.88 -9.87 -0.11 -9.35 16 22 C -0.11 -1.29 2.90 -90.62 -0.26 -1.55 16 23 C -0.14 -1.62 8.96 37.16 0.33 -1.29 16 24 C -0.14 -1.77 8.52 37.16 0.32 -1.46 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.34 7.69 -51.93 -0.40 -0.06 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.01 0.23 6.85 -51.93 -0.36 -0.12 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.76 7.25 -51.93 -0.38 0.39 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -29.25 327.38 -5.64 -34.89 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.33 Total: -1.93 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.85 Total: -40.34 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.13 Total: -4.17 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.25 -5.64 -34.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.587 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds