Wall clock time and date at job start Mon Mar 30 2020 07:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00526 * 2 1 4 4 H 1.09008 * 109.46983 * 31.00391 * 3 2 1 5 5 C 1.50706 * 109.47343 * 150.99722 * 3 2 1 6 6 N 1.29950 * 126.28386 * 44.97674 * 5 3 2 7 7 O 1.21298 * 110.24670 * 179.72607 * 6 5 3 8 8 C 1.33640 * 109.81572 * 0.47259 * 7 6 5 9 9 C 1.50697 * 126.55484 * 179.80197 * 8 7 6 10 10 C 1.52997 * 109.47165 * 269.68427 * 9 8 7 11 11 H 1.09004 * 109.46926 * 55.00041 * 10 9 8 12 12 C 1.53001 * 109.47152 * 295.00027 * 10 9 8 13 13 C 1.50702 * 109.47190 * 174.99545 * 10 9 8 14 14 H 1.07999 * 119.99777 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99981 * 180.02562 * 13 10 9 16 16 N 1.31518 * 120.00139 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00099 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47480 * 89.99864 * 17 15 13 19 19 H 1.48499 * 109.47359 * 209.99941 * 17 15 13 20 20 H 1.48498 * 109.47044 * 329.99805 * 17 15 13 21 21 N 1.31130 * 106.89495 * 359.53634 * 8 7 6 22 22 C 1.52990 * 109.47364 * 270.99985 * 3 2 1 23 23 C 1.53004 * 109.47317 * 178.81567 * 22 3 2 24 24 C 1.53004 * 109.47329 * 298.81626 * 22 3 2 25 25 H 1.09004 * 109.46968 * 295.52498 * 1 2 3 26 26 H 1.09001 * 109.46765 * 55.51793 * 1 2 3 27 27 H 1.08997 * 109.47590 * 175.51779 * 1 2 3 28 28 H 1.09000 * 109.46858 * 29.68606 * 9 8 7 29 29 H 1.08998 * 109.47186 * 149.68390 * 9 8 7 30 30 H 1.08996 * 109.46933 * 299.99851 * 12 10 9 31 31 H 1.09003 * 109.47140 * 59.99791 * 12 10 9 32 32 H 1.08997 * 109.47054 * 179.97438 * 12 10 9 33 33 H 0.97001 * 120.00069 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47423 * 58.81897 * 22 3 2 35 35 H 1.09002 * 109.46752 * 299.99836 * 23 22 3 36 36 H 1.08994 * 109.47268 * 59.99934 * 23 22 3 37 37 H 1.09001 * 109.47123 * 180.02562 * 23 22 3 38 38 H 1.08992 * 109.46875 * 53.85753 * 24 22 3 39 39 H 1.08998 * 109.47300 * 173.86121 * 24 22 3 40 40 H 1.09006 * 109.46858 * 293.85826 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3534 1.9956 0.5294 5 6 3.3499 1.2588 0.6889 6 7 4.2745 0.3629 0.5127 7 8 5.2358 0.6088 1.2104 8 6 5.0047 1.7128 1.9271 9 6 5.9430 2.3526 2.9178 10 6 5.6888 1.7710 4.3099 11 1 5.7725 0.6849 4.2707 12 6 4.2836 2.1578 4.7754 13 6 6.7068 2.3187 5.2767 14 1 7.4596 3.0126 4.9327 15 6 6.6772 1.9340 6.6004 16 7 5.7609 1.0887 7.0192 17 14 7.9386 2.6135 7.7989 18 1 7.4190 3.8639 8.4085 19 1 8.1971 1.6131 8.8655 20 1 9.2027 2.9035 7.0755 21 7 3.8078 2.1364 1.5994 22 6 2.1948 1.7815 -1.4422 23 6 2.7899 3.1911 -1.4417 24 6 3.1403 0.8290 -2.1768 25 1 -0.3633 0.4428 0.9274 26 1 -0.3633 0.5818 -0.8471 27 1 -0.3634 -1.0245 -0.0803 28 1 6.9733 2.1532 2.6233 29 1 5.7724 3.4289 2.9370 30 1 4.1999 3.2438 4.8145 31 1 3.5472 1.7616 4.0760 32 1 4.1023 1.7431 5.7669 33 1 5.7398 0.8184 7.9505 34 1 1.2287 1.7953 -1.9467 35 1 2.1162 3.8697 -0.9184 36 1 3.7559 3.1775 -0.9372 37 1 2.9209 3.5305 -2.4692 38 1 2.7717 -0.1924 -2.0835 39 1 3.1865 1.1038 -3.2305 40 1 4.1365 0.8971 -1.7396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234783972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:19 Heat of formation + Delta-G solvation = -13.984600 kcal Electronic energy + Delta-G solvation = -21133.722045 eV Core-core repulsion = 17950.986037 eV Total energy + Delta-G solvation = -3182.736008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.54909 -39.97219 -37.52753 -36.72437 -35.61241 -34.14673 -32.33185 -29.06630 -28.46884 -28.02910 -27.21212 -26.74097 -24.68768 -23.50178 -21.85281 -20.60596 -19.18833 -18.54848 -18.20603 -17.52067 -16.90525 -16.58756 -16.48495 -15.84270 -15.28673 -14.93375 -14.68373 -14.32848 -14.11563 -13.85479 -13.50256 -13.32598 -13.17908 -13.00236 -12.84254 -12.71282 -12.52020 -12.46713 -12.21543 -12.15961 -12.00186 -11.97712 -11.81229 -11.72356 -11.68485 -10.92481 -10.77571 -10.61976 -10.43798 -8.07774 -6.22795 0.19504 1.19302 1.48531 1.49522 1.59373 1.92831 2.24405 2.48310 2.94160 3.22216 3.27146 3.58847 3.77427 4.06621 4.14706 4.28576 4.43394 4.45943 4.50460 4.53122 4.62390 4.66466 4.69371 4.81315 4.84987 4.89639 4.92798 4.98946 5.05306 5.06340 5.16594 5.29175 5.33807 5.36368 5.61758 5.85017 6.01688 6.05308 6.29428 6.88278 7.20469 7.46761 8.98146 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034336 B = 0.004190 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.264489 B = 6681.152124 C = 6991.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.184 3.816 4 H 0.099 0.901 5 C 0.169 3.831 6 N -0.386 5.386 7 O 0.056 5.944 8 C 0.209 3.791 9 C -0.014 4.014 10 C 0.048 3.952 11 H -0.003 1.003 12 C -0.122 4.122 13 C -0.528 4.528 14 H 0.073 0.927 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.261 1.261 21 N -0.494 5.494 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.052 0.948 33 H 0.260 0.740 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 3.089 -16.418 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.124 3.876 4 H 0.117 0.883 5 C -0.105 4.105 6 N -0.098 5.098 7 O 0.001 5.999 8 C -0.011 4.011 9 C -0.053 4.053 10 C 0.029 3.971 11 H 0.016 0.984 12 C -0.180 4.180 13 C -0.566 4.566 14 H 0.091 0.909 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.185 1.185 21 N -0.229 5.229 22 C -0.123 4.123 23 C -0.199 4.199 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.776 2.415 -16.811 19.117 hybrid contribution 0.491 0.075 1.265 1.359 sum -8.285 2.490 -15.546 17.791 Atomic orbital electron populations 1.23107 0.78214 1.04502 1.01471 1.87951 1.22392 1.26275 1.95111 1.20364 0.85512 0.86280 0.95423 0.88299 1.25912 0.99578 0.88952 0.96023 1.74602 0.97253 1.23046 1.14854 1.85285 1.34810 1.38869 1.40909 1.29462 0.93479 0.84642 0.93469 1.20618 0.95308 1.00045 0.89359 1.18612 0.94339 0.94690 0.89504 0.98434 1.21630 0.96649 0.99047 1.00699 1.21446 1.14014 1.27307 0.93807 0.90899 1.25785 0.97528 0.95175 1.00272 1.70057 1.35444 1.34212 1.16390 0.85517 0.79697 0.77788 0.78416 1.20213 1.21637 1.18490 1.71899 1.08587 1.28312 1.14106 1.21598 1.01966 0.95999 0.92782 1.21767 1.00140 0.95064 1.02921 1.21740 0.98293 0.99355 1.00296 0.93504 0.91195 0.88028 0.87202 0.86872 0.94555 0.96832 0.92909 0.93093 0.86877 0.91286 0.95273 0.90128 0.92764 0.90679 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.79 113.37 1.22 1.62 16 2 O -0.40 -10.99 9.61 -148.98 -1.43 -12.42 16 3 C 0.18 4.95 2.48 29.85 0.07 5.03 16 4 H 0.10 2.41 7.84 -2.38 -0.02 2.40 16 5 C 0.17 5.92 5.33 138.46 0.74 6.66 16 6 N -0.39 -14.73 10.52 -60.32 -0.63 -15.37 16 7 O 0.06 2.20 11.31 74.86 0.85 3.05 16 8 C 0.21 8.02 6.97 88.38 0.62 8.63 16 9 C -0.01 -0.55 5.26 29.85 0.16 -0.39 16 10 C 0.05 2.33 2.29 -11.54 -0.03 2.31 16 11 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 12 C -0.12 -6.00 8.78 71.98 0.63 -5.37 16 13 C -0.53 -27.15 8.56 25.60 0.22 -26.94 16 14 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 15 C 0.01 0.59 5.30 84.65 0.45 1.04 16 16 N -0.92 -52.80 11.32 21.45 0.24 -52.55 16 17 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 N -0.49 -18.59 10.88 -303.21 -3.30 -21.89 16 22 C -0.10 -2.17 2.90 -10.79 -0.03 -2.20 16 23 C -0.14 -2.85 8.96 71.98 0.65 -2.20 16 24 C -0.14 -3.25 8.52 71.98 0.61 -2.64 16 25 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.07 0.86 7.69 -2.39 -0.02 0.84 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.01 0.61 6.85 -2.39 -0.02 0.59 16 32 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.11 1.69 7.71 -2.39 -0.02 1.68 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.03 0.74 7.25 -2.39 -0.02 0.72 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.37 7.54 -2.39 -0.02 1.35 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.03 0.93 6.47 -2.38 -0.02 0.91 16 Total: -1.00 -63.41 327.38 4.08 -59.33 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 5.31 Total: -14.45 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.69 Total: -89.81 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.58 Total: -9.37 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -63.41 4.08 -59.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.346 kcal (2) G-P(sol) polarization free energy of solvation -63.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds