Wall clock time and date at job start Mon Mar 30 2020 07:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00187 * 2 1 4 4 H 1.09004 * 109.46818 * 30.99782 * 3 2 1 5 5 C 1.50699 * 109.47617 * 151.00084 * 3 2 1 6 6 N 1.29957 * 126.28429 * 45.02170 * 5 3 2 7 7 O 1.21301 * 110.24607 * 180.02562 * 6 5 3 8 8 C 1.33643 * 109.81435 * 0.02562 * 7 6 5 9 9 C 1.50695 * 126.55194 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47216 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47017 * 300.02186 * 9 8 7 12 12 C 1.52997 * 109.47266 * 60.02017 * 9 8 7 13 13 C 1.50701 * 109.47202 * 174.99911 * 12 9 8 14 14 H 1.08000 * 119.99861 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99989 * 179.72681 * 13 12 9 16 16 N 1.31517 * 119.99870 * 180.27837 * 15 13 12 17 17 Si 1.86798 * 120.00062 * 0.27497 * 15 13 12 18 18 H 1.48500 * 109.46682 * 90.00182 * 17 15 13 19 19 H 1.48497 * 109.47138 * 210.00034 * 17 15 13 20 20 H 1.48504 * 109.47219 * 330.00434 * 17 15 13 21 21 N 1.31130 * 106.89444 * 0.22683 * 8 7 6 22 22 C 1.53001 * 109.46665 * 271.00300 * 3 2 1 23 23 C 1.52995 * 109.46796 * 178.82432 * 22 3 2 24 24 C 1.52999 * 109.47016 * 298.81938 * 22 3 2 25 25 H 1.08994 * 109.47550 * 295.52602 * 1 2 3 26 26 H 1.08999 * 109.47128 * 55.53050 * 1 2 3 27 27 H 1.09004 * 109.46876 * 175.52323 * 1 2 3 28 28 H 1.09004 * 109.47540 * 300.00161 * 11 9 8 29 29 H 1.09001 * 109.46892 * 60.00089 * 11 9 8 30 30 H 1.09000 * 109.47556 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47005 * 55.00531 * 12 9 8 32 32 H 1.09000 * 109.47216 * 295.00130 * 12 9 8 33 33 H 0.96996 * 120.00011 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47532 * 58.81937 * 22 3 2 35 35 H 1.08996 * 109.47405 * 59.99990 * 23 22 3 36 36 H 1.09008 * 109.46867 * 179.97438 * 23 22 3 37 37 H 1.08995 * 109.47301 * 299.99525 * 23 22 3 38 38 H 1.09006 * 109.47114 * 53.86229 * 24 22 3 39 39 H 1.09002 * 109.47183 * 173.86139 * 24 22 3 40 40 H 1.08997 * 109.47813 * 293.86264 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3532 1.9957 0.5293 5 6 3.3498 1.2590 0.6888 6 7 4.2749 0.3636 0.5119 7 8 5.2337 0.6063 1.2141 8 6 5.0042 1.7127 1.9277 9 6 5.9418 2.3517 2.9194 10 1 5.4740 3.2415 3.3405 11 6 6.2514 1.3587 4.0415 12 6 7.2410 2.7443 2.2130 13 6 8.1288 3.4925 3.1738 14 1 7.7996 3.6698 4.1869 15 6 9.3641 3.9452 2.7610 16 7 10.1411 4.5934 3.6011 17 14 9.9338 3.6378 1.0088 18 1 9.5072 4.7674 0.1444 19 1 11.4143 3.5258 0.9822 20 1 9.3327 2.3760 0.5070 21 7 3.8049 2.1329 1.6041 22 6 2.1946 1.7816 -1.4423 23 6 2.7897 3.1910 -1.4419 24 6 3.1400 0.8290 -2.1769 25 1 -0.3634 0.4428 0.9273 26 1 -0.3633 0.5816 -0.8472 27 1 -0.3633 -1.0246 -0.0802 28 1 5.3259 1.0789 4.5448 29 1 6.7193 0.4688 3.6203 30 1 6.9293 1.8209 4.7591 31 1 7.0119 3.3814 1.3587 32 1 7.7535 1.8458 1.8692 33 1 11.0103 4.9115 3.3109 34 1 1.2284 1.7952 -1.9468 35 1 3.7559 3.1773 -0.9376 36 1 2.9215 3.5300 -2.4696 37 1 2.1163 3.8697 -0.9187 38 1 2.7713 -0.1926 -2.0835 39 1 3.1860 1.1037 -3.2307 40 1 4.1362 0.8970 -1.7399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234784074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:03 Heat of formation + Delta-G solvation = 3.976814 kcal Electronic energy + Delta-G solvation = -21152.740174 eV Core-core repulsion = 17970.783031 eV Total energy + Delta-G solvation = -3181.957143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.24980 -39.05429 -36.04285 -35.64164 -34.46760 -32.49160 -30.96996 -28.12762 -27.73785 -27.29951 -25.93920 -24.56847 -23.40373 -22.30121 -20.65285 -19.19444 -17.84188 -17.23307 -16.94152 -16.53884 -15.85008 -15.60733 -14.73811 -14.42316 -14.13797 -13.85146 -13.57669 -13.15152 -12.82638 -12.65402 -12.28943 -12.23399 -12.13592 -11.72413 -11.63714 -11.53904 -11.21704 -11.15170 -11.05257 -10.94902 -10.94178 -10.67547 -10.33562 -10.18090 -9.88683 -9.86525 -9.37439 -9.29695 -8.61969 -6.12680 -4.12653 1.52058 2.43829 3.18928 3.27349 3.29003 3.35709 3.39503 3.98159 4.38812 4.41881 4.51567 4.70517 4.93790 4.99592 5.07829 5.20596 5.22102 5.33211 5.42820 5.51045 5.58057 5.65158 5.71977 5.77438 5.82170 5.87379 5.93436 6.13369 6.20106 6.23286 6.31475 6.46682 6.51601 6.81409 6.82672 6.99138 7.16757 7.62492 8.39512 8.51538 8.89346 9.48274 10.99736 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.004820 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.766225 B = 5807.816449 C = 6324.856790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.189 3.811 4 H 0.090 0.910 5 C 0.165 3.835 6 N -0.369 5.369 7 O 0.076 5.924 8 C 0.213 3.787 9 C 0.009 3.991 10 H 0.111 0.889 11 C -0.137 4.137 12 C -0.008 4.008 13 C -0.521 4.521 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 N -0.492 5.492 22 C -0.111 4.111 23 C -0.147 4.147 24 C -0.144 4.144 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.336 -6.590 -7.998 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.129 3.871 4 H 0.108 0.892 5 C -0.109 4.109 6 N -0.077 5.077 7 O 0.018 5.982 8 C -0.007 4.007 9 C -0.011 4.011 10 H 0.129 0.871 11 C -0.195 4.195 12 C -0.046 4.046 13 C -0.558 4.558 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.700 3.300 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.188 1.188 21 N -0.226 5.226 22 C -0.130 4.130 23 C -0.204 4.204 24 C -0.202 4.202 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.519 -7.093 -8.524 20.734 hybrid contribution 0.304 0.223 -0.854 0.934 sum -17.215 -6.870 -9.379 20.773 Atomic orbital electron populations 1.22855 0.80435 1.03101 1.00270 1.87985 1.19923 1.26173 1.94916 1.20084 0.86947 0.85765 0.94258 0.89237 1.25194 0.98543 0.90236 0.96889 1.74646 0.96702 1.22663 1.13711 1.85313 1.34389 1.38281 1.40264 1.29598 0.92389 0.84551 0.94142 1.20120 0.93172 0.97395 0.90418 0.87070 1.21800 1.01159 0.98647 0.97873 1.19721 0.90871 0.97432 0.96568 1.20920 1.00527 1.35489 0.98905 0.90195 1.24931 0.96425 0.94374 0.97160 1.69885 1.10568 1.37899 1.35183 0.86885 0.78058 0.79492 0.85595 1.20224 1.21152 1.18825 1.71878 1.08956 1.27386 1.14399 1.21572 1.00703 0.96432 0.94321 1.21799 1.01579 0.94916 1.02126 1.21793 0.99668 0.99497 0.99200 0.93724 0.93649 0.89220 0.93827 0.92338 0.89138 0.96467 0.95321 0.92524 0.89918 0.92412 0.91990 0.92132 0.91655 0.92801 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.79 101.05 1.09 1.35 16 2 O -0.37 -4.88 9.61 -35.23 -0.34 -5.22 16 3 C 0.19 2.52 2.48 -27.88 -0.07 2.45 16 4 H 0.09 1.06 7.84 -51.93 -0.41 0.66 16 5 C 0.16 2.78 5.33 -156.37 -0.83 1.95 16 6 N -0.37 -6.74 10.52 30.90 0.33 -6.41 16 7 O 0.08 1.43 11.31 18.10 0.20 1.64 16 8 C 0.21 3.94 7.02 -13.06 -0.09 3.84 16 9 C 0.01 0.18 2.81 -91.77 -0.26 -0.08 16 10 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 11 C -0.14 -2.31 8.98 37.16 0.33 -1.98 16 12 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 13 C -0.52 -13.69 8.96 -34.44 -0.31 -14.00 16 14 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.43 13.96 55.43 0.77 -25.65 16 17 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 21 N -0.49 -8.88 11.55 -9.87 -0.11 -9.00 16 22 C -0.11 -1.28 2.90 -90.62 -0.26 -1.55 16 23 C -0.15 -1.74 8.96 37.16 0.33 -1.41 16 24 C -0.14 -1.83 8.52 37.16 0.32 -1.52 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.31 7.69 -51.93 -0.40 -0.09 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 31 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 32 H 0.03 0.65 7.19 -51.93 -0.37 0.28 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.06 0.85 7.25 -51.93 -0.38 0.47 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -29.95 327.84 -5.19 -35.14 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.37 Total: -2.51 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 0.06 Total: -9.28 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.98 Total: -41.07 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.13 Total: -3.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.95 -5.19 -35.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.121 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds