Wall clock time and date at job start Mon Mar 30 2020 07:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00187 * 2 1 4 4 H 1.09004 * 109.46818 * 30.99782 * 3 2 1 5 5 C 1.50699 * 109.47617 * 151.00084 * 3 2 1 6 6 N 1.29957 * 126.28429 * 45.02170 * 5 3 2 7 7 O 1.21301 * 110.24607 * 180.02562 * 6 5 3 8 8 C 1.33643 * 109.81435 * 0.02562 * 7 6 5 9 9 C 1.50695 * 126.55194 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47216 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47017 * 300.02186 * 9 8 7 12 12 C 1.52997 * 109.47266 * 60.02017 * 9 8 7 13 13 C 1.50701 * 109.47202 * 174.99911 * 12 9 8 14 14 H 1.08000 * 119.99861 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99989 * 179.72681 * 13 12 9 16 16 N 1.31517 * 119.99870 * 180.27837 * 15 13 12 17 17 Si 1.86798 * 120.00062 * 0.27497 * 15 13 12 18 18 H 1.48500 * 109.46682 * 90.00182 * 17 15 13 19 19 H 1.48497 * 109.47138 * 210.00034 * 17 15 13 20 20 H 1.48504 * 109.47219 * 330.00434 * 17 15 13 21 21 N 1.31130 * 106.89444 * 0.22683 * 8 7 6 22 22 C 1.53001 * 109.46665 * 271.00300 * 3 2 1 23 23 C 1.52995 * 109.46796 * 178.82432 * 22 3 2 24 24 C 1.52999 * 109.47016 * 298.81938 * 22 3 2 25 25 H 1.08994 * 109.47550 * 295.52602 * 1 2 3 26 26 H 1.08999 * 109.47128 * 55.53050 * 1 2 3 27 27 H 1.09004 * 109.46876 * 175.52323 * 1 2 3 28 28 H 1.09004 * 109.47540 * 300.00161 * 11 9 8 29 29 H 1.09001 * 109.46892 * 60.00089 * 11 9 8 30 30 H 1.09000 * 109.47556 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47005 * 55.00531 * 12 9 8 32 32 H 1.09000 * 109.47216 * 295.00130 * 12 9 8 33 33 H 0.96996 * 120.00011 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47532 * 58.81937 * 22 3 2 35 35 H 1.08996 * 109.47405 * 59.99990 * 23 22 3 36 36 H 1.09008 * 109.46867 * 179.97438 * 23 22 3 37 37 H 1.08995 * 109.47301 * 299.99525 * 23 22 3 38 38 H 1.09006 * 109.47114 * 53.86229 * 24 22 3 39 39 H 1.09002 * 109.47183 * 173.86139 * 24 22 3 40 40 H 1.08997 * 109.47813 * 293.86264 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3532 1.9957 0.5293 5 6 3.3498 1.2590 0.6888 6 7 4.2749 0.3636 0.5119 7 8 5.2337 0.6063 1.2141 8 6 5.0042 1.7127 1.9277 9 6 5.9418 2.3517 2.9194 10 1 5.4740 3.2415 3.3405 11 6 6.2514 1.3587 4.0415 12 6 7.2410 2.7443 2.2130 13 6 8.1288 3.4925 3.1738 14 1 7.7996 3.6698 4.1869 15 6 9.3641 3.9452 2.7610 16 7 10.1411 4.5934 3.6011 17 14 9.9338 3.6378 1.0088 18 1 9.5072 4.7674 0.1444 19 1 11.4143 3.5258 0.9822 20 1 9.3327 2.3760 0.5070 21 7 3.8049 2.1329 1.6041 22 6 2.1946 1.7816 -1.4423 23 6 2.7897 3.1910 -1.4419 24 6 3.1400 0.8290 -2.1769 25 1 -0.3634 0.4428 0.9273 26 1 -0.3633 0.5816 -0.8472 27 1 -0.3633 -1.0246 -0.0802 28 1 5.3259 1.0789 4.5448 29 1 6.7193 0.4688 3.6203 30 1 6.9293 1.8209 4.7591 31 1 7.0119 3.3814 1.3587 32 1 7.7535 1.8458 1.8692 33 1 11.0103 4.9115 3.3109 34 1 1.2284 1.7952 -1.9468 35 1 3.7559 3.1773 -0.9376 36 1 2.9215 3.5300 -2.4696 37 1 2.1163 3.8697 -0.9187 38 1 2.7713 -0.1926 -2.0835 39 1 3.1860 1.1037 -3.2307 40 1 4.1362 0.8970 -1.7399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234784074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:02 Heat of formation + Delta-G solvation = -16.175814 kcal Electronic energy + Delta-G solvation = -21153.614058 eV Core-core repulsion = 17970.783031 eV Total energy + Delta-G solvation = -3182.831027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.63683 -39.99612 -37.61118 -36.82781 -35.63851 -34.44680 -32.46770 -29.55398 -29.03836 -28.25385 -26.78686 -26.12857 -24.75434 -23.89154 -21.98615 -20.43553 -19.25210 -19.06955 -18.34226 -17.53583 -16.93781 -16.53180 -16.44553 -15.96159 -15.40260 -15.24773 -14.70853 -14.52437 -14.11849 -14.02531 -13.65384 -13.39289 -13.27359 -13.09888 -12.96412 -12.83926 -12.59872 -12.51680 -12.26717 -12.15969 -12.03501 -11.98655 -11.86654 -11.82849 -11.69186 -11.33439 -10.90019 -10.74288 -10.66914 -8.26369 -6.29447 0.10783 1.11125 1.35914 1.39505 1.48728 1.82533 2.15241 2.36762 2.90229 3.09041 3.14376 3.56025 3.71934 3.99511 4.07484 4.11678 4.19444 4.26982 4.44427 4.46491 4.51693 4.62158 4.64485 4.71267 4.81342 4.83029 4.86771 4.91829 4.94957 5.02128 5.03099 5.16658 5.25046 5.31423 5.32681 5.45738 5.61304 6.00506 6.27365 6.77011 7.12075 7.34334 8.88988 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.004820 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.766225 B = 5807.816449 C = 6324.856790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.186 3.814 4 H 0.106 0.894 5 C 0.170 3.830 6 N -0.383 5.383 7 O 0.063 5.937 8 C 0.208 3.792 9 C 0.017 3.983 10 H 0.113 0.887 11 C -0.131 4.131 12 C -0.003 4.003 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.018 3.982 16 N -0.942 5.942 17 Si 0.930 3.070 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.252 1.252 21 N -0.497 5.497 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.141 4.141 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.014 0.986 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.117 0.883 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 -7.128 -9.680 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.127 3.873 4 H 0.123 0.877 5 C -0.104 4.104 6 N -0.094 5.094 7 O 0.007 5.993 8 C -0.011 4.011 9 C -0.003 4.003 10 H 0.130 0.870 11 C -0.189 4.189 12 C -0.042 4.042 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.583 5.583 17 Si 0.754 3.246 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.176 1.176 21 N -0.231 5.231 22 C -0.125 4.125 23 C -0.202 4.202 24 C -0.198 4.198 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.689 -7.647 -10.201 23.456 hybrid contribution 0.863 0.378 -0.301 0.989 sum -18.826 -7.269 -10.502 22.750 Atomic orbital electron populations 1.23123 0.78087 1.04548 1.01604 1.87954 1.22462 1.25938 1.95090 1.20331 0.85424 0.86530 0.95052 0.87680 1.25935 0.99555 0.88989 0.95878 1.74650 0.97045 1.23552 1.14119 1.85296 1.34939 1.38432 1.40589 1.29392 0.92670 0.84833 0.94236 1.19910 0.91612 0.98140 0.90681 0.86951 1.21743 1.02096 0.98065 0.97016 1.19596 0.92046 0.96744 0.95794 1.21187 1.00841 1.34748 0.98654 0.92507 1.25716 0.96846 0.94494 1.00963 1.70010 1.11230 1.39780 1.37261 0.85965 0.77690 0.79894 0.81027 1.19676 1.20854 1.17592 1.71881 1.08839 1.27640 1.14780 1.21610 1.01959 0.95590 0.93307 1.21791 0.99997 0.95565 1.02854 1.21755 0.98185 0.99634 1.00274 0.93029 0.91514 0.87944 0.91422 0.91961 0.90500 0.96758 0.95246 0.92455 0.86534 0.95842 0.90431 0.90913 0.92254 0.90963 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.79 113.37 1.22 1.53 16 2 O -0.40 -9.46 9.61 -148.98 -1.43 -10.89 16 3 C 0.19 4.53 2.48 29.85 0.07 4.60 16 4 H 0.11 2.19 7.84 -2.38 -0.02 2.17 16 5 C 0.17 5.54 5.33 138.46 0.74 6.28 16 6 N -0.38 -13.79 10.52 -60.30 -0.63 -14.42 16 7 O 0.06 2.34 11.31 74.83 0.85 3.18 16 8 C 0.21 7.58 7.02 88.38 0.62 8.20 16 9 C 0.02 0.63 2.81 -11.54 -0.03 0.60 16 10 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 11 C -0.13 -4.35 8.98 71.98 0.65 -3.71 16 12 C 0.00 -0.16 3.50 29.85 0.10 -0.05 16 13 C -0.52 -27.49 8.96 25.60 0.23 -27.26 16 14 H 0.06 3.22 7.30 -2.91 -0.02 3.20 16 15 C 0.02 0.99 5.47 84.65 0.46 1.45 16 16 N -0.94 -56.58 13.96 21.45 0.30 -56.28 16 17 Si 0.93 43.24 27.47 68.60 1.88 45.13 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 21 N -0.50 -17.45 11.55 -303.19 -3.50 -20.95 16 22 C -0.11 -2.15 2.90 -10.80 -0.03 -2.18 16 23 C -0.14 -3.10 8.96 71.98 0.65 -2.46 16 24 C -0.14 -3.33 8.52 71.98 0.61 -2.72 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.64 7.69 -2.39 -0.02 0.63 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.76 6.95 -2.39 -0.02 2.74 16 31 H 0.01 0.64 7.58 -2.38 -0.02 0.62 16 32 H 0.03 1.31 7.19 -2.39 -0.02 1.29 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.12 1.64 7.71 -2.39 -0.02 1.62 16 35 H 0.02 0.65 7.25 -2.39 -0.02 0.63 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.45 7.54 -2.38 -0.02 1.44 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.03 0.84 6.47 -2.39 -0.02 0.83 16 Total: -1.00 -64.71 327.84 3.72 -61.00 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.96 Total: 8.93 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 5.29 Total: -15.70 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.84 Total: -91.66 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.58 Total: -7.70 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -64.71 3.72 -61.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.821 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds