Wall clock time and date at job start Mon Mar 30 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 6 6 N 1.29942 * 126.29411 * 314.68596 * 5 3 2 7 7 O 1.21297 * 110.25640 * 179.84923 * 6 5 3 8 8 C 1.33642 * 109.80904 * 0.42362 * 7 6 5 9 9 C 1.50696 * 126.55085 * 179.76509 * 8 7 6 10 10 C 1.53003 * 109.47212 * 269.97329 * 9 8 7 11 11 C 1.50689 * 109.47434 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00153 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00098 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47005 * 90.00282 * 15 13 11 17 17 H 1.48497 * 109.46902 * 210.00188 * 15 13 11 18 18 H 1.48497 * 109.47262 * 330.00250 * 15 13 11 19 19 N 1.31132 * 106.89639 * 359.73891 * 8 7 6 20 20 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 21 21 C 1.52998 * 109.47412 * 60.00020 * 20 3 2 22 22 C 1.53002 * 109.46931 * 180.02562 * 20 3 2 23 23 C 1.52998 * 109.46742 * 299.99728 * 20 3 2 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 1.09001 * 109.47261 * 29.97387 * 9 8 7 28 28 H 1.08998 * 109.47418 * 149.97323 * 9 8 7 29 29 H 1.09001 * 109.47055 * 300.00184 * 10 9 8 30 30 H 1.08998 * 109.46934 * 59.99698 * 10 9 8 31 31 H 0.96992 * 120.00463 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.47100 * 59.99352 * 21 20 3 33 33 H 1.08995 * 109.47380 * 179.97438 * 21 20 3 34 34 H 1.09001 * 109.47141 * 300.00289 * 21 20 3 35 35 H 1.08994 * 109.47052 * 59.99457 * 22 20 3 36 36 H 1.08995 * 109.46973 * 179.97438 * 22 20 3 37 37 H 1.09004 * 109.46366 * 299.99450 * 22 20 3 38 38 H 1.09000 * 109.47286 * 60.00586 * 23 20 3 39 39 H 1.09004 * 109.47027 * 180.02562 * 23 20 3 40 40 H 1.08995 * 109.47868 * 300.00356 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 7 2.7166 1.0612 -2.3915 7 8 2.7446 1.7151 -3.4128 8 6 2.2565 2.9375 -3.1815 9 6 2.1223 4.0547 -4.1838 10 6 3.3995 4.8971 -4.1827 11 6 3.2650 6.0147 -5.1845 12 1 2.3594 6.1141 -5.7645 13 6 4.2983 6.9105 -5.3609 14 7 5.4013 6.7893 -4.6550 15 14 4.1319 8.2955 -6.6033 16 1 3.5425 9.4867 -5.9408 17 1 5.4719 8.6410 -7.1418 18 1 3.2489 7.8599 -7.7149 19 7 1.9162 2.9788 -1.9157 20 6 3.3590 1.2631 0.7212 21 6 4.2928 0.2891 -0.0001 22 6 3.9811 2.6610 0.7217 23 6 3.1515 0.7973 2.1637 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.9650 3.6346 -5.1772 28 1 1.2726 4.6828 -3.9162 29 1 3.5568 5.3172 -3.1892 30 1 4.2492 4.2691 -4.4502 31 1 6.1280 7.4197 -4.7788 32 1 4.4405 0.6210 -1.0278 33 1 5.2537 0.2593 0.5134 34 1 3.8494 -0.7066 -0.0001 35 1 3.3157 3.3546 1.2358 36 1 4.9417 2.6310 1.2359 37 1 4.1288 2.9932 -0.3059 38 1 2.7082 -0.1985 2.1637 39 1 4.1123 0.7676 2.6776 40 1 2.4863 1.4911 2.6775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234792905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:13 Heat of formation + Delta-G solvation = -0.439667 kcal Electronic energy + Delta-G solvation = -21098.619587 eV Core-core repulsion = 17916.470931 eV Total energy + Delta-G solvation = -3182.148656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.13378 -39.23961 -36.06147 -35.35188 -34.25372 -32.44158 -30.22204 -28.02447 -27.39198 -27.24330 -25.91375 -25.78958 -23.25034 -22.08859 -20.68347 -19.03567 -17.74834 -17.17090 -16.56674 -16.32786 -15.73463 -15.54752 -14.55753 -14.18596 -14.09634 -13.75748 -13.73017 -13.24688 -12.73490 -12.45695 -12.28112 -12.14773 -11.90725 -11.70495 -11.63739 -11.51784 -11.33476 -11.01001 -10.89470 -10.84696 -10.70133 -10.64642 -10.52435 -10.15164 -10.03176 -10.00050 -9.33925 -9.15269 -8.46048 -6.10394 -4.15175 1.62271 2.58768 3.28091 3.33755 3.35993 3.38323 3.41432 3.91717 4.38293 4.53808 4.65516 4.75121 4.97529 5.09428 5.20005 5.26308 5.27725 5.41634 5.49726 5.54258 5.61913 5.69840 5.79713 5.90937 5.96097 5.98869 6.03779 6.10398 6.15871 6.22450 6.37003 6.40661 6.46470 6.61705 6.92511 7.48035 7.55110 7.85046 8.20615 8.62251 8.90041 9.49856 11.00844 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004185 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.119342 B = 6689.179195 C = 7153.102444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.194 3.806 4 H 0.089 0.911 5 C 0.139 3.861 6 N -0.371 5.371 7 O 0.068 5.932 8 C 0.210 3.790 9 C -0.028 4.028 10 C 0.029 3.971 11 C -0.526 4.526 12 H 0.061 0.939 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.492 5.492 20 C -0.059 4.059 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.135 4.135 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -11.530 10.901 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C 0.134 3.866 4 H 0.107 0.893 5 C -0.134 4.134 6 N -0.081 5.081 7 O 0.010 5.990 8 C -0.009 4.009 9 C -0.067 4.067 10 C -0.010 4.010 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.227 5.227 20 C -0.060 4.060 21 C -0.198 4.198 22 C -0.199 4.199 23 C -0.193 4.193 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.681 -12.291 11.415 18.056 hybrid contribution -0.195 1.170 -0.874 1.474 sum -6.876 -11.121 10.540 16.795 Atomic orbital electron populations 1.22859 0.80925 1.02873 1.00200 1.87977 1.19720 1.26064 1.94327 1.20295 0.96216 0.84951 0.85105 0.89296 1.26194 0.99783 0.87864 0.99590 1.74584 1.20102 1.19520 0.93925 1.85307 1.60759 1.22376 1.30536 1.29606 0.90080 0.87767 0.93423 1.20742 1.04353 0.88934 0.92709 1.19147 0.89480 0.93824 0.98513 1.21068 1.01888 1.11613 1.21878 0.92059 1.25004 0.95148 0.97889 0.96127 1.69962 1.05498 1.37010 1.40462 0.86515 0.77456 0.82190 0.81392 1.20554 1.21169 1.19697 1.71909 1.24021 1.19864 1.06856 1.20615 0.92576 0.97213 0.95608 1.21860 0.98074 0.99228 1.00607 1.21858 1.00748 0.94492 1.02823 1.21794 1.01874 1.01672 0.93927 0.89297 0.94184 0.93597 0.89152 0.88310 0.95548 0.95816 0.92747 0.91995 0.92734 0.91772 0.92101 0.91747 0.92283 0.91720 0.92146 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.36 -4.90 8.98 -35.23 -0.32 -5.21 16 3 C 0.19 2.75 1.93 -27.88 -0.05 2.69 16 4 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 5 C 0.14 2.42 5.27 -156.38 -0.82 1.60 16 6 N -0.37 -6.89 10.38 30.90 0.32 -6.57 16 7 O 0.07 1.29 11.31 18.10 0.20 1.50 16 8 C 0.21 4.01 7.77 -13.06 -0.10 3.91 16 9 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 10 C 0.03 0.70 4.95 -27.89 -0.14 0.56 16 11 C -0.53 -13.98 9.11 -34.44 -0.31 -14.30 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 15 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 N -0.49 -9.29 11.55 -9.87 -0.11 -9.40 16 20 C -0.06 -0.76 0.63 -154.51 -0.10 -0.86 16 21 C -0.14 -1.93 7.95 37.16 0.30 -1.63 16 22 C -0.14 -1.93 8.23 37.16 0.31 -1.62 16 23 C -0.14 -1.37 8.33 37.16 0.31 -1.06 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 1.01 6.07 -51.93 -0.32 0.69 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.99 7.22 -51.93 -0.37 0.61 16 38 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -29.83 332.71 -5.46 -35.30 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.50 Total: -2.69 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 0.22 Total: -8.46 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.94 Total: -41.21 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.11 Total: -3.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.83 -5.46 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234792905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.858 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds