Wall clock time and date at job start Mon Mar 30 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 6 6 N 1.29942 * 126.29411 * 314.68596 * 5 3 2 7 7 O 1.21297 * 110.25640 * 179.84923 * 6 5 3 8 8 C 1.33642 * 109.80904 * 0.42362 * 7 6 5 9 9 C 1.50696 * 126.55085 * 179.76509 * 8 7 6 10 10 C 1.53003 * 109.47212 * 269.97329 * 9 8 7 11 11 C 1.50689 * 109.47434 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00153 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00098 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47005 * 90.00282 * 15 13 11 17 17 H 1.48497 * 109.46902 * 210.00188 * 15 13 11 18 18 H 1.48497 * 109.47262 * 330.00250 * 15 13 11 19 19 N 1.31132 * 106.89639 * 359.73891 * 8 7 6 20 20 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 21 21 C 1.52998 * 109.47412 * 60.00020 * 20 3 2 22 22 C 1.53002 * 109.46931 * 180.02562 * 20 3 2 23 23 C 1.52998 * 109.46742 * 299.99728 * 20 3 2 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 1.09001 * 109.47261 * 29.97387 * 9 8 7 28 28 H 1.08998 * 109.47418 * 149.97323 * 9 8 7 29 29 H 1.09001 * 109.47055 * 300.00184 * 10 9 8 30 30 H 1.08998 * 109.46934 * 59.99698 * 10 9 8 31 31 H 0.96992 * 120.00463 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.47100 * 59.99352 * 21 20 3 33 33 H 1.08995 * 109.47380 * 179.97438 * 21 20 3 34 34 H 1.09001 * 109.47141 * 300.00289 * 21 20 3 35 35 H 1.08994 * 109.47052 * 59.99457 * 22 20 3 36 36 H 1.08995 * 109.46973 * 179.97438 * 22 20 3 37 37 H 1.09004 * 109.46366 * 299.99450 * 22 20 3 38 38 H 1.09000 * 109.47286 * 60.00586 * 23 20 3 39 39 H 1.09004 * 109.47027 * 180.02562 * 23 20 3 40 40 H 1.08995 * 109.47868 * 300.00356 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 7 2.7166 1.0612 -2.3915 7 8 2.7446 1.7151 -3.4128 8 6 2.2565 2.9375 -3.1815 9 6 2.1223 4.0547 -4.1838 10 6 3.3995 4.8971 -4.1827 11 6 3.2650 6.0147 -5.1845 12 1 2.3594 6.1141 -5.7645 13 6 4.2983 6.9105 -5.3609 14 7 5.4013 6.7893 -4.6550 15 14 4.1319 8.2955 -6.6033 16 1 3.5425 9.4867 -5.9408 17 1 5.4719 8.6410 -7.1418 18 1 3.2489 7.8599 -7.7149 19 7 1.9162 2.9788 -1.9157 20 6 3.3590 1.2631 0.7212 21 6 4.2928 0.2891 -0.0001 22 6 3.9811 2.6610 0.7217 23 6 3.1515 0.7973 2.1637 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.9650 3.6346 -5.1772 28 1 1.2726 4.6828 -3.9162 29 1 3.5568 5.3172 -3.1892 30 1 4.2492 4.2691 -4.4502 31 1 6.1280 7.4197 -4.7788 32 1 4.4405 0.6210 -1.0278 33 1 5.2537 0.2593 0.5134 34 1 3.8494 -0.7066 -0.0001 35 1 3.3157 3.3546 1.2358 36 1 4.9417 2.6310 1.2359 37 1 4.1288 2.9932 -0.3059 38 1 2.7082 -0.1985 2.1637 39 1 4.1123 0.7676 2.6776 40 1 2.4863 1.4911 2.6775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234792905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:13 Heat of formation + Delta-G solvation = -19.945502 kcal Electronic energy + Delta-G solvation = -21099.465423 eV Core-core repulsion = 17916.470931 eV Total energy + Delta-G solvation = -3182.994493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.59258 -40.29633 -37.13408 -36.83226 -35.96105 -34.25554 -31.93994 -29.07964 -28.47134 -28.20495 -27.66727 -26.89494 -24.79584 -23.76432 -22.21336 -20.13160 -19.24423 -18.65121 -18.33407 -17.53773 -16.84235 -16.65620 -16.49163 -15.69938 -15.22183 -15.08189 -14.68421 -14.62771 -14.31363 -13.82204 -13.54832 -13.45474 -13.22200 -12.93978 -12.85865 -12.79561 -12.62092 -12.61513 -12.48746 -12.13418 -11.99447 -11.97187 -11.84289 -11.72328 -11.61067 -11.34595 -11.04307 -10.74263 -10.56578 -8.20175 -6.32387 0.13368 1.16204 1.46363 1.47110 1.58259 1.87509 2.31162 2.44595 2.70161 3.15320 3.18806 3.61261 3.66039 3.94398 4.08653 4.20320 4.32775 4.40858 4.42865 4.49620 4.52151 4.61197 4.62607 4.73601 4.75206 4.82734 4.90882 4.93344 4.96691 4.98142 5.07745 5.17939 5.34230 5.42045 5.42933 5.52670 5.77467 5.94107 6.13140 6.83188 7.15274 7.37940 8.92265 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004185 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.119342 B = 6689.179195 C = 7153.102444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.374 6.374 3 C 0.192 3.808 4 H 0.102 0.898 5 C 0.146 3.854 6 N -0.384 5.384 7 O 0.057 5.943 8 C 0.204 3.796 9 C -0.014 4.014 10 C 0.036 3.964 11 C -0.539 4.539 12 H 0.078 0.922 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.257 1.257 19 N -0.502 5.502 20 C -0.058 4.058 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.128 4.128 24 H 0.109 0.891 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.114 0.886 29 H -0.006 1.006 30 H -0.005 1.005 31 H 0.264 0.736 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.018 0.982 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -11.659 11.583 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.132 3.868 4 H 0.120 0.880 5 C -0.128 4.128 6 N -0.096 5.096 7 O 0.002 5.998 8 C -0.016 4.016 9 C -0.052 4.052 10 C -0.003 4.003 11 C -0.577 4.577 12 H 0.096 0.904 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.180 1.180 19 N -0.237 5.237 20 C -0.059 4.059 21 C -0.194 4.194 22 C -0.196 4.196 23 C -0.185 4.185 24 H 0.128 0.872 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.128 -12.433 12.077 19.144 hybrid contribution 0.247 1.147 -1.026 1.558 sum -7.881 -11.286 11.052 17.653 Atomic orbital electron populations 1.23084 0.79342 1.04435 1.00575 1.87969 1.21467 1.25425 1.94167 1.20540 0.97379 0.85687 0.83179 0.87984 1.26874 0.98125 0.87028 1.00738 1.74581 1.20896 1.19928 0.94171 1.85287 1.61027 1.22432 1.31022 1.29536 0.90454 0.87960 0.93632 1.20508 1.01907 0.88598 0.94234 1.18923 0.91213 0.93833 0.96285 1.21563 1.02362 1.11806 1.21969 0.90383 1.25988 0.94764 1.00762 0.98156 1.70113 1.06538 1.38331 1.42482 0.85380 0.77481 0.78741 0.79048 1.19898 1.21319 1.18034 1.71908 1.24334 1.20678 1.06793 1.20661 0.91537 0.96397 0.97312 1.21821 0.99265 0.99286 0.99041 1.21843 1.02031 0.95263 1.00487 1.21745 1.03054 1.02034 0.91640 0.87238 0.95621 0.91342 0.86825 0.86784 0.98782 0.98640 0.92769 0.95176 0.91177 0.91807 0.91125 0.90221 0.96285 0.91381 0.90834 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.81 113.37 1.23 1.63 16 2 O -0.37 -9.44 8.98 -148.98 -1.34 -10.77 16 3 C 0.19 5.22 1.93 29.85 0.06 5.28 16 4 H 0.10 2.48 7.79 -2.39 -0.02 2.46 16 5 C 0.15 5.10 5.27 138.46 0.73 5.83 16 6 N -0.38 -14.51 10.38 -60.33 -0.63 -15.14 16 7 O 0.06 2.22 11.31 74.85 0.85 3.07 16 8 C 0.20 7.88 7.77 88.38 0.69 8.56 16 9 C -0.01 -0.52 5.78 29.85 0.17 -0.35 16 10 C 0.04 1.81 4.95 29.85 0.15 1.95 16 11 C -0.54 -28.67 9.11 25.60 0.23 -28.44 16 12 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 13 C 0.00 0.08 5.46 84.66 0.46 0.54 16 14 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 15 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 N -0.50 -19.13 11.55 -303.20 -3.50 -22.63 16 20 C -0.06 -1.42 0.63 -52.18 -0.03 -1.45 16 21 C -0.14 -3.69 7.95 71.98 0.57 -3.12 16 22 C -0.14 -3.70 8.23 71.98 0.59 -3.11 16 23 C -0.13 -2.22 8.33 71.98 0.60 -1.62 16 24 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 27 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 28 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.03 0.99 6.07 -2.39 -0.01 0.97 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.70 7.68 -2.39 -0.02 1.68 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.02 0.63 7.22 -2.38 -0.02 0.62 16 38 H 0.07 1.16 7.68 -2.39 -0.02 1.15 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -65.47 332.71 4.14 -61.32 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.01 Total: 9.53 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.45 Total: -14.29 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.84 Total: -93.32 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.49 Total: -7.70 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -65.47 4.14 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234792905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.378 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds