Wall clock time and date at job start Mon Mar 30 2020 07:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29447 * 117.95956 * 2 1 4 4 C 1.50067 * 124.07513 * 179.48332 * 3 2 1 5 5 H 1.08997 * 109.36115 * 257.08658 * 4 3 2 6 6 C 1.53000 * 109.35816 * 137.35861 * 4 3 2 7 7 C 1.53041 * 110.13600 * 17.16734 * 4 3 2 8 8 C 1.53385 * 108.42812 * 310.53064 * 7 4 3 9 9 H 1.08997 * 109.82239 * 307.66506 * 8 7 4 10 10 C 1.53004 * 109.64413 * 187.13152 * 8 7 4 11 11 O 1.42905 * 109.46773 * 61.06150 * 10 8 7 12 12 Si 1.63101 * 113.99905 * 210.00100 * 11 10 8 13 13 C 1.86297 * 109.47197 * 59.99753 * 12 11 10 14 14 C 1.86302 * 109.47016 * 179.97438 * 12 11 10 15 15 C 1.86306 * 109.46968 * 299.99867 * 12 11 10 16 16 C 1.50703 * 109.47387 * 181.05802 * 10 8 7 17 17 N 1.27938 * 120.00197 * 130.00514 * 16 10 8 18 18 Si 1.86804 * 119.99826 * 310.00440 * 16 10 8 19 19 H 1.48501 * 109.47121 * 89.99833 * 18 16 10 20 20 H 1.48503 * 109.47198 * 209.99830 * 18 16 10 21 21 H 1.48504 * 109.47325 * 329.99873 * 18 16 10 22 22 C 1.50066 * 117.96466 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47414 * 270.02039 * 1 2 3 24 24 H 1.09000 * 109.47481 * 30.02448 * 1 2 3 25 25 H 1.09002 * 109.47403 * 150.02512 * 1 2 3 26 26 H 1.08002 * 117.96487 * 359.50451 * 3 2 1 27 27 H 1.08995 * 109.47206 * 60.00056 * 6 4 3 28 28 H 1.08998 * 109.47224 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.46727 * 300.00153 * 6 4 3 30 30 H 1.09007 * 109.63554 * 190.85739 * 7 4 3 31 31 H 1.09004 * 109.65846 * 70.22448 * 7 4 3 32 32 H 1.09000 * 109.47541 * 301.06043 * 10 8 7 33 33 H 1.09005 * 109.47355 * 60.00017 * 13 12 11 34 34 H 1.08997 * 109.47216 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47207 * 300.00013 * 13 12 11 36 36 H 1.08997 * 109.46933 * 59.99867 * 14 12 11 37 37 H 1.08997 * 109.46820 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47200 * 299.99966 * 14 12 11 39 39 H 1.08998 * 109.46973 * 59.99630 * 15 12 11 40 40 H 1.09001 * 109.46903 * 180.02562 * 15 12 11 41 41 H 1.08999 * 109.46903 * 299.99734 * 15 12 11 42 42 H 0.97000 * 120.00029 * 180.02562 * 17 16 10 43 43 H 1.09000 * 109.35214 * 76.94848 * 22 2 1 44 44 H 1.09002 * 109.35616 * 317.36919 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 0.0112 5 1 3.9328 1.5745 1.0150 6 6 4.0049 2.4090 -0.9682 7 6 4.2794 -0.0074 -0.4020 8 6 3.6702 -1.1471 0.4243 9 1 3.7163 -0.9001 1.4849 10 6 4.4432 -2.4415 0.1636 11 8 5.8054 -2.2710 0.5605 12 14 6.8639 -3.1649 -0.3001 13 6 6.7530 -2.6968 -2.0999 14 6 8.5923 -2.8467 0.3184 15 6 6.4557 -4.9719 -0.1021 16 6 3.8256 -3.5640 0.9571 17 7 3.5330 -4.6686 0.3818 18 14 3.4872 -3.3424 2.7808 19 1 2.1210 -2.7910 2.9674 20 1 3.5887 -4.6559 3.4663 21 1 4.4828 -2.4042 3.3587 22 6 2.2107 -1.3254 0.0006 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.5088 2.0379 -0.0082 27 1 3.5358 3.3462 -0.6688 28 1 5.0885 2.5264 -0.9618 29 1 3.6746 2.1417 -1.9720 30 1 5.3503 0.0540 -0.2080 31 1 4.1060 -0.1903 -1.4625 32 1 4.4016 -2.6819 -0.8988 33 1 6.9918 -1.6396 -2.2158 34 1 7.4601 -3.2946 -2.6750 35 1 5.7418 -2.8827 -2.4620 36 1 8.6574 -3.1202 1.3714 37 1 9.2996 -3.4444 -0.2564 38 1 8.8308 -1.7895 0.2022 39 1 5.4445 -5.1577 -0.4641 40 1 7.1634 -5.5693 -0.6768 41 1 6.5207 -5.2458 0.9510 42 1 3.1351 -5.3910 0.8925 43 1 2.1749 -1.7538 -1.0011 44 1 1.7118 -1.9990 0.6974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235314868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:56 Heat of formation + Delta-G solvation = -69.395172 kcal Electronic energy + Delta-G solvation = -20169.340226 eV Core-core repulsion = 17437.292486 eV Total energy + Delta-G solvation = -2732.047740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70450 -38.41447 -35.86271 -34.33661 -33.39222 -29.48934 -28.60080 -28.31176 -27.91726 -27.42685 -27.22316 -22.78736 -21.96298 -20.85228 -19.10338 -17.99495 -16.94963 -16.58599 -16.20218 -15.72822 -15.05363 -15.01609 -14.59901 -14.51112 -14.21542 -14.16033 -13.91474 -13.71025 -13.41296 -13.31368 -13.25258 -13.18694 -13.13584 -12.99033 -12.88351 -12.61512 -12.48741 -12.36832 -12.15151 -12.12854 -11.83148 -11.59909 -11.52227 -11.17071 -10.94046 -10.65696 -10.39227 -9.86040 -9.58804 0.60774 1.04825 1.38718 1.40477 1.47212 1.73534 1.91072 1.93931 2.09325 2.54227 3.31043 3.67580 3.75703 3.91755 4.17995 4.22134 4.26736 4.34878 4.48884 4.57007 4.66420 4.68928 4.74193 4.75192 4.78070 4.78303 4.80584 4.82230 4.84394 4.86824 4.93379 4.96283 5.00705 5.05117 5.09124 5.20709 5.27733 5.34493 5.42536 5.50219 5.58516 5.62616 5.75726 5.83117 6.14224 6.72178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.125 4.125 3 C -0.152 4.152 4 C -0.062 4.062 5 H 0.080 0.920 6 C -0.143 4.143 7 C -0.107 4.107 8 C -0.088 4.088 9 H 0.087 0.913 10 C 0.156 3.844 11 O -0.611 6.611 12 Si 1.256 2.744 13 C -0.507 4.507 14 C -0.469 4.469 15 C -0.519 4.519 16 C -0.030 4.030 17 N -0.610 5.610 18 Si 0.917 3.083 19 H -0.235 1.235 20 H -0.249 1.249 21 H -0.220 1.220 22 C -0.082 4.082 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.341 0.659 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 0.819 0.270 1.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.125 4.125 3 C -0.170 4.170 4 C -0.080 4.080 5 H 0.099 0.901 6 C -0.201 4.201 7 C -0.144 4.144 8 C -0.107 4.107 9 H 0.105 0.895 10 C 0.099 3.901 11 O -0.568 6.568 12 Si 1.393 2.607 13 C -0.609 4.609 14 C -0.575 4.575 15 C -0.621 4.621 16 C -0.279 4.279 17 N -0.225 5.225 18 Si 0.733 3.267 19 H -0.158 1.158 20 H -0.172 1.172 21 H -0.142 1.142 22 C -0.119 4.119 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.099 0.901 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.725 0.765 0.368 1.116 hybrid contribution -0.053 -0.659 0.172 0.683 sum -0.778 0.106 0.540 0.952 Atomic orbital electron populations 1.20946 0.92474 1.02456 1.02061 1.20777 0.95640 0.94521 1.01554 1.21978 0.95881 0.97126 1.02001 1.20030 0.92434 0.95530 1.00005 0.90146 1.21786 1.01332 0.97806 0.99135 1.21675 1.00587 0.92735 0.99452 1.21345 0.93730 0.93679 1.01907 0.89491 1.20618 0.80514 0.91858 0.97137 1.85410 1.21483 1.77010 1.72935 0.77230 0.61630 0.60897 0.60969 1.26954 1.04545 1.05802 1.23611 1.26336 1.18982 1.05394 1.06742 1.27202 1.07111 1.23512 1.04247 1.30884 0.94452 0.95161 1.07426 1.68102 1.07992 1.02517 1.43888 0.85849 0.83286 0.82950 0.74648 1.15785 1.17237 1.14158 1.20453 0.93666 0.95344 1.02419 0.91626 0.91894 0.91964 0.87872 0.92609 0.92356 0.92592 0.90110 0.91474 0.89907 0.90980 0.90919 0.91265 0.90888 0.90622 0.90793 0.89023 0.91372 0.91809 0.84182 0.90144 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.06 9.87 36.00 0.36 0.42 16 2 C -0.12 -0.03 5.84 -100.94 -0.59 -0.62 16 3 C -0.15 -0.03 8.61 -35.90 -0.31 -0.34 16 4 C -0.06 0.02 2.97 -92.06 -0.27 -0.25 16 5 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 6 C -0.14 0.11 9.14 37.16 0.34 0.45 16 7 C -0.11 0.05 4.54 -26.51 -0.12 -0.07 16 8 C -0.09 0.02 1.53 -90.41 -0.14 -0.12 16 9 H 0.09 -0.01 6.53 -51.93 -0.34 -0.35 16 10 C 0.16 -0.01 1.41 -27.88 -0.04 -0.05 16 11 O -0.61 -0.07 7.34 -35.23 -0.26 -0.33 16 12 Si 1.26 -1.10 12.68 -169.99 -2.16 -3.25 16 13 C -0.51 0.24 8.56 101.05 0.87 1.10 16 14 C -0.47 0.20 8.65 101.05 0.87 1.07 16 15 C -0.52 -0.22 7.98 101.05 0.81 0.58 16 16 C -0.03 0.00 3.25 -13.90 -0.05 -0.05 16 17 N -0.61 -0.10 11.40 56.23 0.64 0.54 16 18 Si 0.92 0.09 26.46 -169.99 -4.50 -4.41 16 19 H -0.23 -0.01 7.11 56.52 0.40 0.39 16 20 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 21 H -0.22 -0.16 7.11 56.52 0.40 0.25 16 22 C -0.08 0.03 4.60 -28.18 -0.13 -0.10 16 23 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.06 -0.05 7.89 -51.93 -0.41 -0.46 16 25 H 0.06 -0.05 8.08 -51.93 -0.42 -0.47 16 26 H 0.10 -0.01 7.80 -52.49 -0.41 -0.42 16 27 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.05 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.08 -0.05 7.55 -51.92 -0.39 -0.44 16 31 H 0.07 -0.03 8.10 -51.93 -0.42 -0.45 16 32 H 0.08 -0.06 6.12 -51.93 -0.32 -0.38 16 33 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 35 H 0.07 -0.02 7.10 -51.93 -0.37 -0.39 16 36 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 37 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 39 H 0.09 0.10 5.48 -51.93 -0.28 -0.18 16 40 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 41 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 42 H 0.34 -0.42 8.23 -40.82 -0.34 -0.76 16 43 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 44 H 0.07 -0.05 6.79 -51.93 -0.35 -0.40 16 LS Contribution 340.39 15.07 5.13 5.13 Total: 0.00 -2.10 340.39 -7.82 -9.92 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -8.27 Total: -9.63 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 1.60 Total: 2.03 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: 0.64 Total: 0.54 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -0.26 Total: -0.33 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -6.65 Total: -7.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -2.10 -7.82 -9.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235314868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.476 kcal (2) G-P(sol) polarization free energy of solvation -2.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds