Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46895 * 109.47189 * 2 1 4 4 C 1.46897 * 110.99905 * 200.19875 * 3 2 1 5 5 C 1.50699 * 109.47168 * 79.31075 * 4 3 2 6 6 H 1.07994 * 119.99978 * 5.02732 * 5 4 3 7 7 C 1.37875 * 119.99895 * 185.03326 * 5 4 3 8 8 N 1.31517 * 120.00099 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46724 * 89.99839 * 9 7 5 11 11 H 1.48499 * 109.46869 * 209.99905 * 9 7 5 12 12 H 1.48493 * 109.46871 * 329.99992 * 9 7 5 13 13 C 1.46898 * 110.99851 * 76.24241 * 3 2 1 14 14 H 1.08998 * 109.47653 * 317.22081 * 13 3 2 15 15 C 1.50698 * 109.47131 * 77.22469 * 13 3 2 16 16 C 1.33385 * 125.20613 * 233.23722 * 15 13 3 17 17 C 1.38421 * 114.92543 * 179.97438 * 16 15 13 18 18 C 1.33389 * 114.92082 * 0.02562 * 17 16 15 19 19 S 1.75888 * 109.59305 * 359.75569 * 18 17 16 20 20 C 1.53004 * 109.47003 * 197.22360 * 13 3 2 21 21 H 1.09000 * 109.46895 * 173.52948 * 20 13 3 22 22 C 1.52997 * 109.47362 * 53.52907 * 20 13 3 23 23 N 1.46903 * 109.47195 * 293.52828 * 20 13 3 24 24 H 1.08997 * 109.46631 * 294.69190 * 1 2 3 25 25 H 1.08996 * 109.46893 * 174.69191 * 1 2 3 26 26 H 1.09000 * 109.47138 * 54.68946 * 1 2 3 27 27 H 1.08999 * 109.47311 * 120.00061 * 2 1 3 28 28 H 1.09000 * 109.46563 * 239.99868 * 2 1 3 29 29 H 1.09003 * 109.46700 * 199.30585 * 4 3 2 30 30 H 1.08997 * 109.47089 * 319.30279 * 4 3 2 31 31 H 0.97001 * 119.99879 * 179.97438 * 8 7 5 32 32 H 1.08003 * 122.53607 * 0.02562 * 16 15 13 33 33 H 1.07998 * 122.53788 * 180.02562 * 17 16 15 34 34 H 1.07993 * 125.20514 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.46912 * 304.75072 * 22 20 13 36 36 H 1.09007 * 109.47139 * 64.74698 * 22 20 13 37 37 H 1.08999 * 109.47473 * 184.74606 * 22 20 13 38 38 H 1.00899 * 110.99957 * 180.02562 * 23 20 13 39 39 H 1.00897 * 111.00082 * 303.95489 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4087 1.4522 -0.4735 5 6 3.4307 1.3744 -1.9783 6 1 2.5037 1.3659 -2.5322 7 6 4.6344 1.3139 -2.6479 8 7 5.7634 1.3246 -1.9734 9 14 4.6618 1.2167 -4.5133 10 1 4.6990 2.5889 -5.0799 11 1 5.8662 0.4670 -4.9522 12 1 3.4420 0.5171 -4.9904 13 6 1.8877 1.9899 1.3321 14 1 0.9206 1.7231 1.7582 15 6 2.9885 1.4806 2.2265 16 6 2.8093 0.9208 3.4238 17 6 3.9720 0.5279 4.0640 18 6 5.0956 0.7691 3.3867 19 16 4.7056 1.5273 1.8482 20 6 1.9903 3.5119 1.2134 21 1 1.7784 3.9669 2.1810 22 6 0.9774 4.0124 0.1817 23 7 3.3468 3.8795 0.7860 24 1 -0.3632 0.4293 0.9337 25 1 -0.3633 -1.0232 -0.0951 26 1 -0.3633 0.5940 -0.8386 27 1 1.8935 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.8571 2.3922 -0.1517 30 1 3.9749 0.6186 -0.0582 31 1 6.6103 1.2817 -2.4445 32 1 1.8310 0.7836 3.8604 33 1 3.9697 0.0614 5.0380 34 1 6.0919 0.5311 3.7285 35 1 1.1361 3.4945 -0.7642 36 1 -0.0333 3.8146 0.5391 37 1 1.1075 5.0847 0.0352 38 1 3.4402 4.8805 0.7006 39 1 4.0389 3.5047 1.4174 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249798683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = 54.521212 kcal Electronic energy + Delta-G solvation = -19772.627615 eV Core-core repulsion = 17035.615113 eV Total energy + Delta-G solvation = -2737.012502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.78999 -36.57395 -34.41340 -32.48372 -30.28555 -29.21034 -28.72147 -26.49710 -24.73982 -22.78280 -22.31324 -20.83789 -19.38756 -18.54792 -16.39737 -16.28158 -15.68911 -15.28422 -14.76745 -14.49026 -13.97420 -13.67316 -13.46926 -12.74492 -12.48824 -12.23993 -12.11147 -11.88363 -11.80768 -11.43504 -11.27908 -11.04069 -10.93766 -10.87795 -10.70644 -10.48624 -10.28069 -10.10721 -9.89049 -9.54362 -9.13877 -8.37306 -8.18906 -7.75132 -7.50348 -7.00813 -5.83281 -3.79366 1.54316 2.32631 2.74045 3.21615 3.41032 3.46938 3.50554 4.55574 4.94194 5.00235 5.23708 5.50649 5.51821 5.52546 5.73935 5.81733 5.84865 5.89946 6.00322 6.06528 6.12566 6.18234 6.36279 6.41474 6.44355 6.58691 6.74227 6.81008 6.84893 6.97868 7.09783 7.46914 7.58381 7.70309 7.91866 8.01057 8.34958 8.49394 8.74679 9.24564 9.79281 11.26261 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.008488 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.337260 B = 3298.155116 C = 3800.048354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 N -0.506 5.506 4 C 0.143 3.857 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.152 3.848 14 H 0.084 0.916 15 C -0.222 4.222 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.283 4.283 19 S 0.236 5.764 20 C 0.104 3.896 21 H 0.024 0.976 22 C -0.133 4.133 23 N -0.822 5.822 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.004 0.996 31 H 0.256 0.744 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.330 0.670 39 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 2.012 10.049 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.228 5.228 4 C 0.016 3.984 5 C -0.523 4.523 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.040 3.960 14 H 0.102 0.898 15 C -0.343 4.343 16 C -0.184 4.184 17 C -0.179 4.179 18 C -0.419 4.419 19 S 0.503 5.497 20 C -0.009 4.009 21 H 0.042 0.958 22 C -0.191 4.191 23 N -0.360 5.360 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.144 0.856 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.182 2.370 7.829 9.683 hybrid contribution -0.034 -0.824 1.791 1.972 sum -5.215 1.546 9.620 11.051 Atomic orbital electron populations 1.21777 0.96680 1.00205 1.01228 1.22033 0.94288 0.90971 1.00623 1.62503 1.26460 1.15951 1.17879 1.20813 0.81411 1.00371 0.95790 1.21031 0.92022 1.48263 0.90982 0.92424 1.24881 0.95757 0.96280 0.97676 1.69951 0.97000 1.51948 1.34758 0.86646 0.77080 0.77818 0.86652 1.20962 1.21692 1.20244 1.20519 0.93304 0.93819 0.88377 0.89764 1.25877 0.99965 1.08310 1.00108 1.19950 0.99073 1.03847 0.95486 1.19903 0.91852 1.05005 1.01162 1.26531 1.02079 1.10537 1.02776 1.86120 0.97822 1.56152 1.09589 1.21260 0.90219 0.93816 0.95560 0.95787 1.21664 0.96183 0.99592 1.01640 1.59294 1.03842 1.16475 1.56400 0.94007 0.93619 0.92087 0.96166 0.90222 0.87913 0.97856 0.93416 0.85695 0.86122 0.83364 0.88943 0.93564 0.94046 0.85611 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.96 37.16 0.37 -1.85 16 2 C 0.05 0.96 5.40 -3.82 -0.02 0.94 16 3 N -0.51 -10.42 3.10 -229.48 -0.71 -11.13 16 4 C 0.14 3.50 2.61 -4.98 -0.01 3.48 16 5 C -0.48 -13.34 8.71 -34.44 -0.30 -13.64 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.15 2.70 2.14 -68.86 -0.15 2.55 16 14 H 0.08 1.38 6.57 -51.93 -0.34 1.04 16 15 C -0.22 -4.00 4.09 -36.01 -0.15 -4.15 16 16 C -0.15 -2.48 10.02 -41.21 -0.41 -2.89 16 17 C -0.15 -2.33 10.18 -41.21 -0.42 -2.75 16 18 C -0.28 -4.72 11.23 29.04 0.33 -4.39 16 19 S 0.24 4.55 15.50 -107.50 -1.67 2.88 16 20 C 0.10 1.71 3.31 -67.71 -0.22 1.49 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 C -0.13 -2.11 9.34 37.16 0.35 -1.76 16 23 N -0.82 -14.66 6.19 -4.66 -0.03 -14.69 16 24 H 0.04 0.60 6.93 -51.93 -0.36 0.24 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.02 0.40 7.41 -51.93 -0.38 0.01 16 28 H 0.08 1.73 7.45 -51.93 -0.39 1.35 16 29 H 0.10 2.52 3.27 -49.10 -0.16 2.36 16 30 H 0.00 0.11 5.92 -39.40 -0.23 -0.12 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 35 H 0.09 1.77 7.27 -51.93 -0.38 1.39 16 36 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.33 5.09 9.04 -39.29 -0.36 4.74 16 39 H 0.33 5.95 4.98 -18.81 -0.09 5.85 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -29.14 311.23 -8.36 -37.50 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.62 Total: 10.58 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -0.74 Total: -21.55 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.00 Total: -50.91 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.67 Total: 2.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.14 -8.36 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249798683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.022 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds