Wall clock time and date at job start Mon Mar 30 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46898 * 109.47324 * 2 1 4 4 C 1.46896 * 111.00190 * 293.60647 * 3 2 1 5 5 C 1.50698 * 109.47092 * 296.79902 * 4 3 2 6 6 H 1.08001 * 119.99709 * 4.62954 * 5 4 3 7 7 C 1.37876 * 120.00050 * 184.62693 * 5 4 3 8 8 N 1.31516 * 119.99951 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46837 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47209 * 119.99883 * 9 7 5 12 12 H 1.48505 * 109.46995 * 240.00173 * 9 7 5 13 13 C 1.46901 * 111.00299 * 169.64871 * 3 2 1 14 14 H 1.08994 * 109.47088 * 61.00759 * 13 3 2 15 15 C 1.50706 * 109.47222 * 301.00777 * 13 3 2 16 16 C 1.33385 * 125.20253 * 139.99659 * 15 13 3 17 17 C 1.38422 * 114.92353 * 179.97438 * 16 15 13 18 18 C 1.33395 * 114.91552 * 359.97438 * 17 16 15 19 19 S 1.75877 * 109.59545 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47134 * 181.01140 * 13 3 2 21 21 H 1.09004 * 109.47152 * 301.65433 * 20 13 3 22 22 C 1.53001 * 109.46881 * 181.65646 * 20 13 3 23 23 N 1.46898 * 109.47454 * 61.65314 * 20 13 3 24 24 H 1.09000 * 109.47350 * 67.05924 * 1 2 3 25 25 H 1.09001 * 109.47083 * 187.05639 * 1 2 3 26 26 H 1.09002 * 109.47482 * 307.05572 * 1 2 3 27 27 H 1.09000 * 109.47327 * 240.00253 * 2 1 3 28 28 H 1.09003 * 109.47399 * 120.00465 * 2 1 3 29 29 H 1.09000 * 109.47072 * 56.79662 * 4 3 2 30 30 H 1.09005 * 109.47325 * 176.79610 * 4 3 2 31 31 H 0.97004 * 119.99808 * 180.02562 * 8 7 5 32 32 H 1.08005 * 122.53652 * 359.95926 * 16 15 13 33 33 H 1.07993 * 122.54201 * 180.02562 * 17 16 15 34 34 H 1.08001 * 125.19563 * 180.26897 * 18 17 16 35 35 H 1.08994 * 109.47193 * 63.78185 * 22 20 13 36 36 H 1.09005 * 109.46643 * 183.77609 * 22 20 13 37 37 H 1.08997 * 109.47208 * 303.77375 * 22 20 13 38 38 H 1.00892 * 111.00137 * 300.00239 * 23 20 13 39 39 H 1.00905 * 110.99588 * 63.95672 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6774 2.0644 -1.2566 5 6 2.3699 1.3762 -2.4045 6 1 2.9404 0.4760 -2.2295 7 6 2.2751 1.8956 -3.6782 8 7 1.5799 2.9915 -3.8913 9 14 3.1330 1.0421 -5.1013 10 1 3.8431 -0.1622 -4.6006 11 1 2.1264 0.6379 -6.1154 12 1 4.1120 1.9724 -5.7189 13 6 3.4671 1.4316 0.2464 14 1 3.9879 0.8924 -0.5448 15 6 3.7713 0.7902 1.5758 16 6 4.8133 -0.0040 1.8259 17 6 4.8876 -0.4774 3.1245 18 6 3.9060 -0.0670 3.9292 19 16 2.8072 0.9754 3.0352 20 6 3.9347 2.8883 0.2641 21 1 3.6882 3.3606 -0.6868 22 6 5.4487 2.9352 0.4796 23 7 3.2622 3.6053 1.3557 24 1 -0.3634 0.4006 -0.9464 25 1 -0.3633 -1.0199 0.1262 26 1 -0.3634 0.6193 0.8201 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5986 2.0267 -1.4079 30 1 2.0013 3.1040 -1.2075 31 1 1.5130 3.3568 -4.7875 32 1 5.5436 -0.2587 1.0721 33 1 5.6805 -1.1288 3.4609 34 1 3.8041 -0.3311 4.9715 35 1 5.9507 2.4620 -0.3642 36 1 5.7723 3.9731 0.5593 37 1 5.7017 2.4043 1.3973 38 1 2.2605 3.5885 1.2362 39 1 3.5257 3.2268 2.2532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249798687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:22 Heat of formation + Delta-G solvation = 33.057193 kcal Electronic energy + Delta-G solvation = -19570.001395 eV Core-core repulsion = 16832.058143 eV Total energy + Delta-G solvation = -2737.943252 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.88333 -36.82904 -34.67147 -32.57232 -30.24289 -29.41594 -28.30173 -26.74338 -24.66904 -23.32110 -22.80540 -20.32401 -19.32411 -18.93716 -16.92720 -16.14507 -15.68268 -15.38777 -14.75503 -14.47837 -14.11694 -13.87966 -13.73114 -12.80792 -12.56243 -12.46473 -12.30020 -11.84915 -11.79008 -11.70057 -11.41314 -11.20922 -11.03451 -10.82625 -10.80614 -10.51263 -10.43800 -10.16582 -10.03545 -9.94330 -9.57046 -8.59681 -8.46772 -8.16976 -7.87922 -7.29275 -6.08151 -4.16879 1.27216 1.93032 2.34993 2.98163 3.22560 3.31584 3.33901 4.36129 4.75116 5.11557 5.22946 5.25221 5.31188 5.61248 5.74807 5.79310 5.84913 5.90591 6.02109 6.06196 6.17650 6.27028 6.31585 6.39286 6.50889 6.54762 6.58243 6.69260 6.79138 6.83259 6.89483 7.19893 7.49121 7.75467 7.85353 7.97332 8.09469 8.17061 8.22428 8.92460 9.50124 10.96908 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.006857 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.512444 B = 4082.432672 C = 4334.415696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.181 3.819 5 C -0.549 4.549 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.120 3.880 14 H 0.069 0.931 15 C -0.138 4.138 16 C -0.160 4.160 17 C -0.129 4.129 18 C -0.246 4.246 19 S 0.126 5.874 20 C 0.099 3.901 21 H 0.105 0.895 22 C -0.144 4.144 23 N -0.837 5.837 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.349 0.651 39 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 -4.527 12.560 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.259 5.259 4 C 0.056 3.944 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.008 3.992 14 H 0.086 0.914 15 C -0.256 4.256 16 C -0.190 4.190 17 C -0.161 4.161 18 C -0.381 4.381 19 S 0.389 5.611 20 C -0.014 4.014 21 H 0.122 0.878 22 C -0.202 4.202 23 N -0.368 5.368 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.173 0.827 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.838 -2.709 12.918 13.501 hybrid contribution 1.771 -2.815 -1.773 3.769 sum 4.610 -5.524 11.144 13.265 Atomic orbital electron populations 1.21683 0.95788 0.99910 1.02312 1.21918 0.95387 0.90527 0.99597 1.62620 1.09988 1.15188 1.38151 1.19882 0.96888 0.94666 0.82942 1.21695 1.32617 1.10986 0.93493 0.92648 1.24917 0.95109 0.94764 0.98705 1.69945 1.40260 1.20540 1.21780 0.86651 0.79565 0.79684 0.82796 1.19957 1.20978 1.20902 1.20874 0.91787 0.97298 0.89285 0.91369 1.24865 0.98445 1.02856 0.99443 1.20077 1.00220 1.01272 0.97398 1.20049 0.99940 1.02640 0.93426 1.25684 1.01455 1.07201 1.03796 1.84382 1.28147 1.47297 1.01241 1.21488 0.93220 0.89902 0.96780 0.87754 1.21829 0.95442 1.01740 1.01225 1.59166 1.13842 1.59299 1.04507 0.92036 0.93838 0.92896 0.94081 0.93076 0.94799 0.94050 0.92822 0.84894 0.85156 0.82702 0.92497 0.92226 0.93143 0.83713 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.67 37.15 0.36 -2.08 16 2 C 0.05 1.03 5.26 -3.83 -0.02 1.01 16 3 N -0.54 -10.47 3.74 -229.48 -0.86 -11.33 16 4 C 0.18 4.31 4.50 -4.98 -0.02 4.29 16 5 C -0.55 -14.23 7.54 -34.44 -0.26 -14.49 16 6 H 0.06 1.45 5.86 -52.49 -0.31 1.15 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.12 2.20 1.44 -68.86 -0.10 2.10 16 14 H 0.07 1.42 6.68 -51.93 -0.35 1.07 16 15 C -0.14 -2.17 2.47 -36.00 -0.09 -2.26 16 16 C -0.16 -2.32 9.17 -41.21 -0.38 -2.70 16 17 C -0.13 -1.65 10.18 -41.21 -0.42 -2.07 16 18 C -0.25 -3.05 11.23 29.04 0.33 -2.72 16 19 S 0.13 1.77 20.47 -107.50 -2.20 -0.43 16 20 C 0.10 1.78 2.82 -67.71 -0.19 1.59 16 21 H 0.10 2.24 6.25 -51.93 -0.32 1.92 16 22 C -0.14 -2.27 9.26 37.16 0.34 -1.93 16 23 N -0.84 -14.10 9.02 -4.67 -0.04 -14.14 16 24 H 0.06 1.20 6.84 -51.93 -0.36 0.84 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.87 6.41 -51.93 -0.33 0.54 16 28 H 0.05 0.91 6.21 -51.93 -0.32 0.59 16 29 H 0.03 0.88 6.50 -51.93 -0.34 0.54 16 30 H 0.04 1.06 6.17 -51.93 -0.32 0.74 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.13 1.85 8.06 -52.48 -0.42 1.42 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.75 6.51 -51.93 -0.34 0.41 16 38 H 0.35 6.17 8.46 -39.30 -0.33 5.84 16 39 H 0.33 5.10 6.42 -39.29 -0.25 4.85 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -26.62 313.74 -8.87 -35.49 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.66 Total: 11.71 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -0.55 Total: -17.52 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.16 Total: -49.88 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.20 Total: -0.43 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.62 -8.87 -35.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249798687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.548 kcal (2) G-P(sol) polarization free energy of solvation -26.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds