Wall clock time and date at job start Mon Mar 30 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46898 * 109.47324 * 2 1 4 4 C 1.46896 * 111.00190 * 293.60647 * 3 2 1 5 5 C 1.50698 * 109.47092 * 296.79902 * 4 3 2 6 6 H 1.08001 * 119.99709 * 4.62954 * 5 4 3 7 7 C 1.37876 * 120.00050 * 184.62693 * 5 4 3 8 8 N 1.31516 * 119.99951 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46837 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47209 * 119.99883 * 9 7 5 12 12 H 1.48505 * 109.46995 * 240.00173 * 9 7 5 13 13 C 1.46901 * 111.00299 * 169.64871 * 3 2 1 14 14 H 1.08994 * 109.47088 * 61.00759 * 13 3 2 15 15 C 1.50706 * 109.47222 * 301.00777 * 13 3 2 16 16 C 1.33385 * 125.20253 * 139.99659 * 15 13 3 17 17 C 1.38422 * 114.92353 * 179.97438 * 16 15 13 18 18 C 1.33395 * 114.91552 * 359.97438 * 17 16 15 19 19 S 1.75877 * 109.59545 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47134 * 181.01140 * 13 3 2 21 21 H 1.09004 * 109.47152 * 301.65433 * 20 13 3 22 22 C 1.53001 * 109.46881 * 181.65646 * 20 13 3 23 23 N 1.46898 * 109.47454 * 61.65314 * 20 13 3 24 24 H 1.09000 * 109.47350 * 67.05924 * 1 2 3 25 25 H 1.09001 * 109.47083 * 187.05639 * 1 2 3 26 26 H 1.09002 * 109.47482 * 307.05572 * 1 2 3 27 27 H 1.09000 * 109.47327 * 240.00253 * 2 1 3 28 28 H 1.09003 * 109.47399 * 120.00465 * 2 1 3 29 29 H 1.09000 * 109.47072 * 56.79662 * 4 3 2 30 30 H 1.09005 * 109.47325 * 176.79610 * 4 3 2 31 31 H 0.97004 * 119.99808 * 180.02562 * 8 7 5 32 32 H 1.08005 * 122.53652 * 359.95926 * 16 15 13 33 33 H 1.07993 * 122.54201 * 180.02562 * 17 16 15 34 34 H 1.08001 * 125.19563 * 180.26897 * 18 17 16 35 35 H 1.08994 * 109.47193 * 63.78185 * 22 20 13 36 36 H 1.09005 * 109.46643 * 183.77609 * 22 20 13 37 37 H 1.08997 * 109.47208 * 303.77375 * 22 20 13 38 38 H 1.00892 * 111.00137 * 300.00239 * 23 20 13 39 39 H 1.00905 * 110.99588 * 63.95672 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6774 2.0644 -1.2566 5 6 2.3699 1.3762 -2.4045 6 1 2.9404 0.4760 -2.2295 7 6 2.2751 1.8956 -3.6782 8 7 1.5799 2.9915 -3.8913 9 14 3.1330 1.0421 -5.1013 10 1 3.8431 -0.1622 -4.6006 11 1 2.1264 0.6379 -6.1154 12 1 4.1120 1.9724 -5.7189 13 6 3.4671 1.4316 0.2464 14 1 3.9879 0.8924 -0.5448 15 6 3.7713 0.7902 1.5758 16 6 4.8133 -0.0040 1.8259 17 6 4.8876 -0.4774 3.1245 18 6 3.9060 -0.0670 3.9292 19 16 2.8072 0.9754 3.0352 20 6 3.9347 2.8883 0.2641 21 1 3.6882 3.3606 -0.6868 22 6 5.4487 2.9352 0.4796 23 7 3.2622 3.6053 1.3557 24 1 -0.3634 0.4006 -0.9464 25 1 -0.3633 -1.0199 0.1262 26 1 -0.3634 0.6193 0.8201 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5986 2.0267 -1.4079 30 1 2.0013 3.1040 -1.2075 31 1 1.5130 3.3568 -4.7875 32 1 5.5436 -0.2587 1.0721 33 1 5.6805 -1.1288 3.4609 34 1 3.8041 -0.3311 4.9715 35 1 5.9507 2.4620 -0.3642 36 1 5.7723 3.9731 0.5593 37 1 5.7017 2.4043 1.3973 38 1 2.2605 3.5885 1.2362 39 1 3.5257 3.2268 2.2532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249798687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:21 Heat of formation + Delta-G solvation = 16.254515 kcal Electronic energy + Delta-G solvation = -19570.730014 eV Core-core repulsion = 16832.058143 eV Total energy + Delta-G solvation = -2738.671871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32350 -38.07166 -36.18535 -34.59143 -31.59441 -30.96758 -29.65312 -28.44302 -26.18372 -24.98824 -24.10402 -21.85613 -20.88449 -20.05917 -18.61390 -17.77400 -17.09374 -16.85360 -16.34259 -15.94909 -15.63007 -15.43614 -15.14016 -14.44796 -14.16759 -13.60369 -13.51433 -13.30911 -13.21692 -13.17555 -13.00175 -12.74691 -12.62669 -12.47113 -12.42455 -12.01994 -11.96126 -11.83425 -11.67006 -11.53283 -11.33227 -10.56834 -9.83696 -9.32355 -9.15725 -9.01326 -8.14788 -6.31862 0.17899 0.82689 1.27843 1.32770 1.35598 1.45064 1.91991 2.36118 3.11435 3.21207 3.79644 3.90482 4.22070 4.31480 4.32511 4.48966 4.53950 4.59864 4.68605 4.72456 4.78041 4.83458 4.94564 5.00722 5.16827 5.25725 5.26532 5.29233 5.34303 5.40102 5.43710 5.50450 5.65473 5.79324 6.06372 6.23769 6.35356 6.49490 6.72229 6.88251 7.38599 8.87718 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.006857 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.512444 B = 4082.432672 C = 4334.415696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 N -0.524 5.524 4 C 0.200 3.800 5 C -0.548 4.548 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.129 3.871 14 H 0.037 0.963 15 C -0.169 4.169 16 C -0.151 4.151 17 C -0.137 4.137 18 C -0.226 4.226 19 S 0.121 5.879 20 C 0.102 3.898 21 H 0.061 0.939 22 C -0.135 4.135 23 N -0.831 5.831 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.187 0.813 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.343 0.657 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -6.077 14.599 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 N -0.248 5.248 4 C 0.074 3.926 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.017 3.983 14 H 0.055 0.945 15 C -0.287 4.287 16 C -0.182 4.182 17 C -0.167 4.167 18 C -0.362 4.362 19 S 0.384 5.616 20 C -0.011 4.011 21 H 0.079 0.921 22 C -0.193 4.193 23 N -0.362 5.362 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.204 0.796 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.934 -4.269 14.976 16.062 hybrid contribution 1.449 -2.374 -2.292 3.604 sum 5.383 -6.643 12.683 15.296 Atomic orbital electron populations 1.21625 0.94607 1.01585 1.01167 1.21933 0.96361 0.89698 0.99071 1.62554 1.11403 1.15495 1.35338 1.19469 0.94962 0.93796 0.84400 1.21902 1.32007 1.10544 0.94283 0.93217 1.25659 0.95881 0.95409 1.01227 1.70054 1.41764 1.21942 1.22344 0.85682 0.78559 0.78724 0.79769 1.19516 1.20615 1.20474 1.20659 0.90045 0.97244 0.90349 0.94488 1.24475 1.00339 1.04947 0.98956 1.20310 0.99364 1.00023 0.98506 1.20276 1.00961 1.03089 0.92371 1.26075 0.99934 1.05234 1.04943 1.84390 1.28513 1.48163 1.00506 1.21312 0.94898 0.89622 0.95266 0.92050 1.21742 0.93479 1.02288 1.01799 1.59123 1.13306 1.59106 1.04686 0.94735 0.91204 0.91942 0.96769 0.91251 0.97217 0.96309 0.92761 0.84741 0.82329 0.79588 0.92612 0.91697 0.91764 0.84389 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.67 71.98 0.70 -3.90 16 2 C 0.06 2.20 5.26 86.30 0.45 2.65 16 3 N -0.52 -21.07 3.74 -879.94 -3.29 -24.36 16 4 C 0.20 9.99 4.50 85.56 0.38 10.38 16 5 C -0.55 -29.51 7.54 25.60 0.19 -29.32 16 6 H 0.05 2.69 5.86 -2.91 -0.02 2.68 16 7 C 0.02 0.99 5.46 84.65 0.46 1.46 16 8 N -0.92 -53.93 13.29 21.45 0.28 -53.65 16 9 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.13 4.82 1.44 44.17 0.06 4.88 16 14 H 0.04 1.60 6.68 -2.39 -0.02 1.58 16 15 C -0.17 -5.12 2.47 24.59 0.06 -5.06 16 16 C -0.15 -4.04 9.17 21.21 0.19 -3.84 16 17 C -0.14 -2.94 10.18 21.22 0.22 -2.73 16 18 C -0.23 -4.65 11.23 66.72 0.75 -3.90 16 19 S 0.12 3.11 20.47 -56.49 -1.16 1.95 16 20 C 0.10 3.77 2.82 44.92 0.13 3.90 16 21 H 0.06 2.80 6.25 -2.39 -0.01 2.79 16 22 C -0.13 -4.21 9.26 71.98 0.67 -3.54 16 23 N -0.83 -28.11 9.02 -168.68 -1.52 -29.64 16 24 H 0.03 1.37 6.84 -2.39 -0.02 1.35 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.01 0.61 6.41 -2.39 -0.02 0.60 16 28 H 0.07 2.40 6.21 -2.39 -0.01 2.39 16 29 H 0.01 0.53 6.50 -2.39 -0.02 0.52 16 30 H 0.02 1.03 6.17 -2.38 -0.01 1.01 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.06 1.81 6.51 -2.39 -0.02 1.80 16 38 H 0.34 12.36 8.46 -89.70 -0.76 11.60 16 39 H 0.34 10.19 6.42 -89.69 -0.58 9.61 16 Total: -1.00 -58.70 313.74 0.34 -58.37 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.27 Total: 30.56 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.27 Total: -29.03 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.53 Total: -107.64 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.16 Total: 1.95 kcal Total: -58.70 0.34 -58.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249798687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.620 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds