Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47006 * 2 1 4 4 C 1.46891 * 111.00176 * 191.54448 * 3 2 1 5 5 C 1.50698 * 109.47333 * 75.89781 * 4 3 2 6 6 H 1.07993 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99927 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00264 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47306 * 59.99309 * 9 7 5 11 11 H 1.48491 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47064 * 299.99846 * 9 7 5 13 13 C 1.46896 * 110.99967 * 67.58568 * 3 2 1 14 14 H 1.09000 * 109.47469 * 305.52333 * 13 3 2 15 15 C 1.50699 * 109.47057 * 65.52225 * 13 3 2 16 16 C 1.38426 * 122.53988 * 242.95417 * 15 13 3 17 17 C 1.33391 * 114.92264 * 179.97438 * 16 15 13 18 18 S 1.75890 * 109.59304 * 359.97438 * 17 16 15 19 19 C 1.33385 * 122.54310 * 62.65446 * 15 13 3 20 20 C 1.53000 * 109.47508 * 185.51916 * 13 3 2 21 21 H 1.08997 * 109.47189 * 293.13403 * 20 13 3 22 22 C 1.53003 * 109.47441 * 173.13126 * 20 13 3 23 23 N 1.46904 * 109.46797 * 53.12961 * 20 13 3 24 24 H 1.09000 * 109.46870 * 184.05262 * 1 2 3 25 25 H 1.08998 * 109.47494 * 304.04664 * 1 2 3 26 26 H 1.09000 * 109.47569 * 64.05417 * 1 2 3 27 27 H 1.09007 * 109.47278 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47384 * 120.00017 * 2 1 3 29 29 H 1.09008 * 109.47189 * 195.89289 * 4 3 2 30 30 H 1.09006 * 109.47316 * 315.89369 * 4 3 2 31 31 H 0.97004 * 120.00621 * 180.02562 * 8 7 5 32 32 H 1.08001 * 122.53918 * 359.94513 * 16 15 13 33 33 H 1.07999 * 125.20551 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.20065 * 0.03168 * 19 15 13 35 35 H 1.08997 * 109.46782 * 60.00021 * 22 20 13 36 36 H 1.09002 * 109.47034 * 179.97438 * 22 20 13 37 37 H 1.09004 * 109.46966 * 299.99917 * 22 20 13 38 38 H 1.00896 * 111.00378 * 304.99472 * 23 20 13 39 39 H 1.00903 * 110.99848 * 68.94465 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4619 1.4335 -0.2744 5 6 3.7020 1.1968 -1.7432 6 1 2.8668 1.0269 -2.4064 7 6 4.9882 1.1962 -2.2402 8 7 6.0053 1.4026 -1.4325 9 14 5.2859 0.9021 -4.0607 10 1 4.5962 1.9532 -4.8513 11 1 6.7438 0.9512 -4.3381 12 1 4.7540 -0.4315 -4.4401 13 6 1.7021 2.0557 1.2678 14 1 0.6318 1.9809 1.4603 15 6 2.4615 1.3952 2.3894 16 6 1.8290 0.7512 3.4388 17 6 2.6480 0.2194 4.3476 18 16 4.3178 0.5267 3.8883 19 6 3.7942 1.3817 2.4432 20 6 2.1026 3.5296 1.1795 21 1 3.1875 3.6077 1.1092 22 6 1.6182 4.2657 2.4303 23 7 1.4901 4.1329 -0.0117 24 1 -0.3633 -1.0251 0.0726 25 1 -0.3634 0.5753 0.8515 26 1 -0.3634 0.4496 -0.9241 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8521 2.4125 0.0043 30 1 3.9683 0.6619 0.3055 31 1 6.9101 1.4025 -1.7821 32 1 0.7538 0.6847 3.5163 33 1 2.3338 -0.3178 5.2303 34 1 4.4513 1.8290 1.7121 35 1 2.0727 3.8180 3.3141 36 1 1.9040 5.3157 2.3675 37 1 0.5333 4.1876 2.5005 38 1 1.7297 3.6144 -0.8435 39 1 0.4892 4.2051 0.0936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249837721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = 38.996076 kcal Electronic energy + Delta-G solvation = -19617.686517 eV Core-core repulsion = 16880.000794 eV Total energy + Delta-G solvation = -2737.685723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.55772 -35.98798 -34.51965 -32.66137 -30.42633 -29.21011 -28.05574 -27.32243 -24.99720 -23.31501 -22.13415 -20.85388 -19.42335 -18.15970 -17.40432 -16.23504 -15.41205 -15.14493 -14.99135 -14.56290 -14.02857 -13.69088 -13.25146 -13.03105 -12.52204 -12.48725 -12.32521 -11.98111 -11.91144 -11.73763 -11.40770 -11.32202 -11.06197 -10.84371 -10.77178 -10.73117 -10.49917 -10.30708 -10.13343 -9.64168 -9.24926 -8.46820 -8.35358 -8.26250 -7.80279 -7.31671 -6.03925 -4.04323 1.41430 2.05853 2.39377 3.09154 3.33116 3.37632 3.40379 4.41513 4.78603 5.10312 5.31740 5.32893 5.42238 5.57378 5.61476 5.72675 5.77039 5.83324 5.87037 5.94945 6.03640 6.13230 6.20504 6.32556 6.36217 6.46376 6.58853 6.66464 6.74722 6.80545 6.89304 7.22869 7.34383 7.75474 7.84559 8.07502 8.15180 8.21000 8.51179 9.02212 9.59735 11.06359 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.007404 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.844458 B = 3780.696463 C = 4248.831031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.521 5.521 4 C 0.183 3.817 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.106 3.894 14 H 0.075 0.925 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.230 4.230 18 S 0.067 5.933 19 C -0.176 4.176 20 C 0.100 3.900 21 H 0.084 0.916 22 C -0.141 4.141 23 N -0.837 5.837 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.023 0.977 29 H 0.036 0.964 30 H 0.003 0.997 31 H 0.261 0.739 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.363 0.637 39 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 -0.237 9.806 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 N -0.244 5.244 4 C 0.058 3.942 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.008 4.008 14 H 0.093 0.907 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.365 4.365 18 S 0.330 5.670 19 C -0.312 4.312 20 C -0.012 4.012 21 H 0.102 0.898 22 C -0.199 4.199 23 N -0.366 5.366 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.173 0.827 34 H 0.197 0.803 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.180 0.820 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.572 0.316 10.201 12.139 hybrid contribution -1.105 -1.441 -0.935 2.043 sum -7.677 -1.125 9.266 12.086 Atomic orbital electron populations 1.21803 0.96738 1.00175 1.01462 1.21907 0.93884 0.90434 1.00824 1.62447 1.20088 1.15122 1.26729 1.20062 0.80800 0.96778 0.96543 1.21112 0.92013 1.48170 0.93154 0.92087 1.24942 0.96110 0.95495 0.97842 1.69909 0.98802 1.50120 1.34912 0.86592 0.76861 0.78686 0.85432 1.20168 1.21470 1.20483 1.21463 0.97578 0.95428 0.86333 0.90701 1.19671 0.93673 1.02825 0.98617 1.20069 1.00343 1.00086 0.94548 1.25420 0.96012 1.09915 1.05182 1.84199 1.07823 1.55008 1.19972 1.26125 0.98997 1.05548 1.00529 1.21459 1.00165 0.89142 0.90444 0.89820 1.21800 1.00355 1.00519 0.97269 1.59117 1.14092 1.57704 1.05704 0.93486 0.93600 0.92445 0.90256 0.95841 0.94652 0.97964 0.92903 0.85228 0.82717 0.80305 0.92538 0.92259 0.93408 0.82048 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.96 37.16 0.37 -1.78 16 2 C 0.06 1.08 5.37 -3.82 -0.02 1.06 16 3 N -0.52 -10.16 3.40 -229.48 -0.78 -10.94 16 4 C 0.18 4.36 2.65 -4.98 -0.01 4.34 16 5 C -0.51 -13.50 8.56 -34.44 -0.29 -13.79 16 6 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.11 1.77 1.80 -68.87 -0.12 1.65 16 14 H 0.07 1.17 6.12 -51.93 -0.32 0.86 16 15 C -0.13 -2.24 2.53 -106.25 -0.27 -2.51 16 16 C -0.12 -1.75 9.87 -41.21 -0.41 -2.15 16 17 C -0.23 -3.20 11.23 29.04 0.33 -2.87 16 18 S 0.07 1.04 23.34 -107.50 -2.51 -1.47 16 19 C -0.18 -3.21 8.18 29.04 0.24 -2.97 16 20 C 0.10 1.68 2.49 -67.71 -0.17 1.51 16 21 H 0.08 1.65 5.69 -51.93 -0.30 1.35 16 22 C -0.14 -1.98 9.23 37.16 0.34 -1.64 16 23 N -0.84 -13.98 9.30 -4.66 -0.04 -14.03 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.64 6.33 -51.93 -0.33 0.31 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.64 7.40 -51.93 -0.38 1.26 16 28 H 0.02 0.45 7.01 -51.93 -0.36 0.09 16 29 H 0.04 0.90 4.90 -51.92 -0.25 0.65 16 30 H 0.00 0.07 6.09 -51.93 -0.32 -0.25 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.18 3.76 5.40 -52.49 -0.28 3.48 16 35 H 0.06 0.79 7.44 -51.93 -0.39 0.40 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.36 6.92 7.94 -39.29 -0.31 6.60 16 39 H 0.32 4.69 8.93 -39.29 -0.35 4.34 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -27.19 315.57 -8.66 -35.85 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.67 Total: 12.14 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -0.12 Total: -17.69 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.19 -8.66 -35.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249837721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.845 kcal (2) G-P(sol) polarization free energy of solvation -27.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds