Wall clock time and date at job start Mon Mar 30 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47006 * 2 1 4 4 C 1.46891 * 111.00176 * 191.54448 * 3 2 1 5 5 C 1.50698 * 109.47333 * 75.89781 * 4 3 2 6 6 H 1.07993 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99927 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00264 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47306 * 59.99309 * 9 7 5 11 11 H 1.48491 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47064 * 299.99846 * 9 7 5 13 13 C 1.46896 * 110.99967 * 67.58568 * 3 2 1 14 14 H 1.09000 * 109.47469 * 305.52333 * 13 3 2 15 15 C 1.50699 * 109.47057 * 65.52225 * 13 3 2 16 16 C 1.38426 * 122.53988 * 242.95417 * 15 13 3 17 17 C 1.33391 * 114.92264 * 179.97438 * 16 15 13 18 18 S 1.75890 * 109.59304 * 359.97438 * 17 16 15 19 19 C 1.33385 * 122.54310 * 62.65446 * 15 13 3 20 20 C 1.53000 * 109.47508 * 185.51916 * 13 3 2 21 21 H 1.08997 * 109.47189 * 293.13403 * 20 13 3 22 22 C 1.53003 * 109.47441 * 173.13126 * 20 13 3 23 23 N 1.46904 * 109.46797 * 53.12961 * 20 13 3 24 24 H 1.09000 * 109.46870 * 184.05262 * 1 2 3 25 25 H 1.08998 * 109.47494 * 304.04664 * 1 2 3 26 26 H 1.09000 * 109.47569 * 64.05417 * 1 2 3 27 27 H 1.09007 * 109.47278 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47384 * 120.00017 * 2 1 3 29 29 H 1.09008 * 109.47189 * 195.89289 * 4 3 2 30 30 H 1.09006 * 109.47316 * 315.89369 * 4 3 2 31 31 H 0.97004 * 120.00621 * 180.02562 * 8 7 5 32 32 H 1.08001 * 122.53918 * 359.94513 * 16 15 13 33 33 H 1.07999 * 125.20551 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.20065 * 0.03168 * 19 15 13 35 35 H 1.08997 * 109.46782 * 60.00021 * 22 20 13 36 36 H 1.09002 * 109.47034 * 179.97438 * 22 20 13 37 37 H 1.09004 * 109.46966 * 299.99917 * 22 20 13 38 38 H 1.00896 * 111.00378 * 304.99472 * 23 20 13 39 39 H 1.00903 * 110.99848 * 68.94465 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4619 1.4335 -0.2744 5 6 3.7020 1.1968 -1.7432 6 1 2.8668 1.0269 -2.4064 7 6 4.9882 1.1962 -2.2402 8 7 6.0053 1.4026 -1.4325 9 14 5.2859 0.9021 -4.0607 10 1 4.5962 1.9532 -4.8513 11 1 6.7438 0.9512 -4.3381 12 1 4.7540 -0.4315 -4.4401 13 6 1.7021 2.0557 1.2678 14 1 0.6318 1.9809 1.4603 15 6 2.4615 1.3952 2.3894 16 6 1.8290 0.7512 3.4388 17 6 2.6480 0.2194 4.3476 18 16 4.3178 0.5267 3.8883 19 6 3.7942 1.3817 2.4432 20 6 2.1026 3.5296 1.1795 21 1 3.1875 3.6077 1.1092 22 6 1.6182 4.2657 2.4303 23 7 1.4901 4.1329 -0.0117 24 1 -0.3633 -1.0251 0.0726 25 1 -0.3634 0.5753 0.8515 26 1 -0.3634 0.4496 -0.9241 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8521 2.4125 0.0043 30 1 3.9683 0.6619 0.3055 31 1 6.9101 1.4025 -1.7821 32 1 0.7538 0.6847 3.5163 33 1 2.3338 -0.3178 5.2303 34 1 4.4513 1.8290 1.7121 35 1 2.0727 3.8180 3.3141 36 1 1.9040 5.3157 2.3675 37 1 0.5333 4.1876 2.5005 38 1 1.7297 3.6144 -0.8435 39 1 0.4892 4.2051 0.0936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249837721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:31 Heat of formation + Delta-G solvation = 21.133574 kcal Electronic energy + Delta-G solvation = -19618.461093 eV Core-core repulsion = 16880.000794 eV Total energy + Delta-G solvation = -2738.460299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96686 -37.33826 -35.97564 -34.67060 -31.84781 -30.66843 -29.33657 -28.93906 -26.65696 -24.67527 -23.81331 -22.27014 -20.80385 -19.50146 -18.96095 -17.99369 -16.84083 -16.77307 -16.39907 -16.22397 -15.58045 -15.00101 -14.72443 -14.45198 -14.13654 -13.83107 -13.64334 -13.48167 -13.39808 -13.05283 -12.80902 -12.72717 -12.67934 -12.47425 -12.34491 -12.19381 -12.01864 -11.79825 -11.74407 -11.24875 -11.17386 -10.53433 -9.70645 -9.54793 -9.13011 -8.95466 -8.15299 -6.23284 0.16550 0.81314 1.15298 1.40354 1.42465 1.49757 1.84444 2.41735 3.16639 3.29937 3.83421 3.97668 4.20078 4.27243 4.30720 4.41840 4.46667 4.56990 4.64087 4.66983 4.75431 4.80587 5.00553 5.03900 5.12996 5.15646 5.24566 5.31301 5.32369 5.40441 5.46716 5.58096 5.64866 5.71233 6.13648 6.42184 6.44185 6.68916 6.86546 6.92491 7.45188 8.93642 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.007404 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.844458 B = 3780.696463 C = 4248.831031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.059 3.941 3 N -0.521 5.521 4 C 0.210 3.790 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.109 3.891 14 H 0.101 0.899 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.207 4.207 18 S 0.066 5.934 19 C -0.215 4.215 20 C 0.103 3.897 21 H 0.042 0.958 22 C -0.131 4.131 23 N -0.838 5.838 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.015 0.985 29 H 0.013 0.987 30 H -0.028 1.028 31 H 0.260 0.740 32 H 0.161 0.839 33 H 0.193 0.807 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.349 0.651 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -0.804 10.815 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 N -0.243 5.243 4 C 0.084 3.916 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.004 4.004 14 H 0.118 0.882 15 C -0.139 4.139 16 C -0.160 4.160 17 C -0.342 4.342 18 S 0.329 5.671 19 C -0.352 4.352 20 C -0.010 4.010 21 H 0.061 0.939 22 C -0.189 4.189 23 N -0.367 5.367 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.031 0.969 30 H -0.011 1.011 31 H 0.069 0.931 32 H 0.179 0.821 33 H 0.210 0.790 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.163 0.837 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.318 -0.244 11.224 14.590 hybrid contribution -0.266 -1.267 -1.185 1.755 sum -9.584 -1.511 10.040 13.962 Atomic orbital electron populations 1.21700 0.93077 1.01923 1.02186 1.21906 0.96731 0.89324 0.98995 1.62369 1.16983 1.16015 1.28924 1.19545 0.83252 0.94295 0.94479 1.21484 0.91992 1.47453 0.94677 0.92383 1.25767 0.96017 0.95434 1.02095 1.70053 0.99043 1.51341 1.36718 0.85589 0.76683 0.78839 0.80392 1.19413 1.21317 1.19756 1.21514 0.98759 0.94975 0.85147 0.88154 1.19772 0.93009 1.02152 0.99000 1.20266 1.01919 1.00056 0.93798 1.25864 0.94190 1.08415 1.05702 1.84137 1.09817 1.54558 1.18547 1.25807 0.99540 1.08006 1.01799 1.21369 0.97975 0.89841 0.91785 0.93938 1.21701 1.01756 0.99991 0.95422 1.59054 1.15334 1.57350 1.04999 0.91410 0.91853 0.92497 0.93187 0.96703 0.96948 1.01075 0.93075 0.82141 0.78991 0.84454 0.92535 0.92209 0.90924 0.83697 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.96 71.98 0.72 -2.83 16 2 C 0.06 2.16 5.37 86.30 0.46 2.62 16 3 N -0.52 -20.56 3.40 -879.93 -3.00 -23.56 16 4 C 0.21 10.59 2.65 85.56 0.23 10.81 16 5 C -0.52 -28.68 8.56 25.60 0.22 -28.46 16 6 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.11 3.57 1.80 44.17 0.08 3.65 16 14 H 0.10 2.81 6.12 -2.39 -0.01 2.79 16 15 C -0.12 -4.10 2.53 -20.92 -0.05 -4.15 16 16 C -0.13 -3.41 9.87 21.22 0.21 -3.20 16 17 C -0.21 -5.10 11.23 66.72 0.75 -4.35 16 18 S 0.07 2.05 23.34 -56.49 -1.32 0.73 16 19 C -0.22 -8.22 8.18 66.72 0.55 -7.67 16 20 C 0.10 3.46 2.49 44.92 0.11 3.57 16 21 H 0.04 1.79 5.69 -2.39 -0.01 1.78 16 22 C -0.13 -3.45 9.23 71.98 0.66 -2.78 16 23 N -0.84 -27.77 9.30 -168.67 -1.57 -29.34 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.50 6.33 -2.39 -0.02 1.48 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 2.11 7.40 -2.38 -0.02 2.09 16 28 H 0.01 0.57 7.01 -2.39 -0.02 0.55 16 29 H 0.01 0.69 4.90 -2.38 -0.01 0.68 16 30 H -0.03 -1.59 6.09 -2.38 -0.01 -1.61 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.14 6.42 5.40 -2.91 -0.02 6.40 16 35 H 0.06 1.49 7.44 -2.39 -0.02 1.48 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.35 13.48 7.94 -89.70 -0.71 12.77 16 39 H 0.34 9.23 8.93 -89.69 -0.80 8.43 16 Total: -1.00 -62.03 315.57 0.38 -61.66 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.45 Total: 31.25 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 4.40 Total: -32.06 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.28 Total: -108.36 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.32 Total: 0.73 kcal Total: -62.03 0.38 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249837721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.791 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds