Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.47073 * 2 1 4 4 C 1.46892 * 111.00239 * 294.30873 * 3 2 1 5 5 C 1.50700 * 109.47149 * 296.30527 * 4 3 2 6 6 H 1.07998 * 120.00098 * 4.68615 * 5 4 3 7 7 C 1.37878 * 119.99839 * 184.69253 * 5 4 3 8 8 N 1.31519 * 119.99755 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00236 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47009 * 90.00355 * 9 7 5 11 11 H 1.48499 * 109.47213 * 210.00285 * 9 7 5 12 12 H 1.48497 * 109.47163 * 330.00375 * 9 7 5 13 13 C 1.46899 * 110.99856 * 170.35549 * 3 2 1 14 14 H 1.09003 * 109.47299 * 59.64766 * 13 3 2 15 15 C 1.50704 * 109.47071 * 299.65054 * 13 3 2 16 16 C 1.38429 * 122.53990 * 140.00187 * 15 13 3 17 17 C 1.33387 * 114.91966 * 179.72556 * 16 15 13 18 18 S 1.75881 * 109.59624 * 0.27008 * 17 16 15 19 19 C 1.33388 * 122.54006 * 320.25301 * 15 13 3 20 20 C 1.53000 * 109.47269 * 179.65322 * 13 3 2 21 21 H 1.09005 * 109.46717 * 302.36419 * 20 13 3 22 22 C 1.52991 * 109.47352 * 182.36953 * 20 13 3 23 23 N 1.46892 * 109.47190 * 62.36293 * 20 13 3 24 24 H 1.08992 * 109.47480 * 186.90438 * 1 2 3 25 25 H 1.09007 * 109.47275 * 306.90552 * 1 2 3 26 26 H 1.09004 * 109.46958 * 66.90092 * 1 2 3 27 27 H 1.08994 * 109.47350 * 240.00458 * 2 1 3 28 28 H 1.08998 * 109.46996 * 119.99899 * 2 1 3 29 29 H 1.09010 * 109.47245 * 56.29906 * 4 3 2 30 30 H 1.08995 * 109.47745 * 176.30053 * 4 3 2 31 31 H 0.96999 * 119.99938 * 179.97438 * 8 7 5 32 32 H 1.08005 * 122.53382 * 359.97438 * 16 15 13 33 33 H 1.08005 * 125.19885 * 180.24666 * 17 16 15 34 34 H 1.07997 * 125.20248 * 359.97438 * 19 15 13 35 35 H 1.09001 * 109.47637 * 63.80848 * 22 20 13 36 36 H 1.08999 * 109.47362 * 183.80843 * 22 20 13 37 37 H 1.09005 * 109.47194 * 303.80709 * 22 20 13 38 38 H 1.00904 * 111.00063 * 176.05210 * 23 20 13 39 39 H 1.00897 * 111.00498 * 300.00286 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6629 2.0696 -1.2498 5 6 2.3518 1.3935 -2.4071 6 1 2.9294 0.4961 -2.2422 7 6 2.2446 1.9209 -3.6765 8 7 2.8462 1.3312 -4.6865 9 14 1.2450 3.4729 -3.9619 10 1 2.1224 4.6615 -3.8111 11 1 0.6748 3.4493 -5.3329 12 1 0.1433 3.5417 -2.9687 13 6 3.4698 1.4307 0.2298 14 1 3.9800 0.8742 -0.5565 15 6 3.7861 0.8138 1.5679 16 6 4.8850 -0.0035 1.7700 17 6 5.0227 -0.4624 3.0148 18 16 3.7085 0.1422 4.0152 19 6 3.0256 1.0099 2.6461 20 6 3.9432 2.8855 0.2143 21 1 3.6769 3.3441 -0.7381 22 6 5.4618 2.9298 0.3946 23 7 3.2983 3.6219 1.3096 24 1 -0.3634 -1.0201 0.1235 25 1 -0.3634 0.6171 0.8218 26 1 -0.3633 0.4032 -0.9453 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5832 2.0248 -1.3932 30 1 1.9794 3.1112 -1.1967 31 1 2.7706 1.7019 -5.5796 32 1 5.5804 -0.2475 0.9805 33 1 5.8193 -1.1070 3.3561 34 1 2.1303 1.6130 2.6751 35 1 5.9428 2.4420 -0.4532 36 1 5.7909 3.9673 0.4515 37 1 5.7337 2.4115 1.3142 38 1 3.6429 4.5689 1.3608 39 1 2.2940 3.6074 1.2131 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249837724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = 40.860920 kcal Electronic energy + Delta-G solvation = -19634.843436 eV Core-core repulsion = 16897.238579 eV Total energy + Delta-G solvation = -2737.604857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20986 -36.26339 -34.55456 -32.47573 -30.06310 -29.41188 -28.62958 -27.13511 -24.92250 -23.12515 -22.57032 -20.16787 -19.14194 -18.03554 -17.42383 -16.59632 -15.65222 -15.23391 -14.73904 -14.39465 -14.25933 -13.86065 -13.30897 -12.73715 -12.46663 -12.35897 -12.26640 -11.96071 -11.82695 -11.74071 -11.40444 -11.33531 -11.08542 -10.96962 -10.60451 -10.53331 -10.41521 -10.27065 -10.06895 -9.80404 -9.52227 -8.64153 -8.27771 -8.05593 -7.88577 -7.21296 -6.15614 -4.14884 1.51979 2.10256 2.42730 3.20136 3.24520 3.29756 3.31844 4.33245 4.79208 5.08126 5.18504 5.34856 5.55240 5.66631 5.79692 5.88005 5.94437 6.02034 6.05698 6.06934 6.23488 6.33190 6.39572 6.42752 6.53772 6.60747 6.69767 6.73684 6.84864 6.89683 6.93889 7.06592 7.13649 7.53064 7.70494 8.01161 8.04041 8.10872 8.40130 8.87637 9.47426 10.97363 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.006677 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.260989 B = 4192.298822 C = 4531.853878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 N -0.525 5.525 4 C 0.149 3.851 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.158 3.842 14 H 0.061 0.939 15 C -0.082 4.082 16 C -0.120 4.120 17 C -0.227 4.227 18 S 0.036 5.964 19 C -0.142 4.142 20 C 0.099 3.901 21 H 0.052 0.948 22 C -0.143 4.143 23 N -0.837 5.837 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.326 0.674 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 0.477 13.602 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 N -0.249 5.249 4 C 0.023 3.977 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.189 1.189 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.094 4.094 16 C -0.151 4.151 17 C -0.362 4.362 18 S 0.298 5.702 19 C -0.277 4.277 20 C -0.012 4.012 21 H 0.070 0.930 22 C -0.201 4.201 23 N -0.367 5.367 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.261 0.000 15.791 15.841 hybrid contribution 0.049 1.142 -3.372 3.561 sum 1.310 1.142 12.418 12.539 Atomic orbital electron populations 1.21701 0.96151 1.00062 1.01875 1.21885 0.94971 0.90312 1.00133 1.62468 1.11118 1.15218 1.36079 1.20255 0.96711 0.94196 0.86582 1.21637 1.32436 1.12684 0.91807 0.90725 1.24947 0.94946 0.96891 0.96114 1.69923 1.43395 1.40195 1.00029 0.86870 0.81199 0.83986 0.77779 1.20369 1.21291 1.18929 1.20120 0.89971 0.94176 0.91094 0.92147 1.18754 0.94928 0.98899 0.96793 1.20159 0.99146 0.99030 0.96778 1.25285 1.04210 1.09376 0.97303 1.84043 1.22032 1.48145 1.15992 1.25294 1.04693 1.04415 0.93331 1.21249 0.93437 0.93641 0.92887 0.93040 1.21809 0.95369 1.00949 1.01959 1.58776 1.11108 1.18390 1.48453 0.93665 0.93021 0.92432 0.93741 0.92543 0.95091 0.95962 0.92704 0.84995 0.82849 0.81632 0.92440 0.93508 0.92060 0.86293 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.65 37.16 0.36 -2.02 16 2 C 0.06 1.04 5.22 -3.82 -0.02 1.02 16 3 N -0.53 -10.01 3.58 -229.47 -0.82 -10.83 16 4 C 0.15 3.32 3.51 -4.98 -0.02 3.30 16 5 C -0.55 -14.41 8.12 -34.44 -0.28 -14.68 16 6 H 0.07 2.17 6.10 -52.49 -0.32 1.85 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.87 20.78 27.38 -169.99 -4.65 16.13 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.26 -6.05 6.68 56.52 0.38 -5.67 16 13 C 0.16 2.90 1.29 -68.86 -0.09 2.81 16 14 H 0.06 1.30 6.66 -51.93 -0.35 0.96 16 15 C -0.08 -1.33 2.56 -106.25 -0.27 -1.61 16 16 C -0.12 -1.80 9.02 -41.21 -0.37 -2.17 16 17 C -0.23 -3.05 11.23 29.04 0.33 -2.72 16 18 S 0.04 0.48 23.34 -107.50 -2.51 -2.03 16 19 C -0.14 -2.16 8.74 29.04 0.25 -1.91 16 20 C 0.10 1.71 2.73 -67.72 -0.18 1.52 16 21 H 0.05 1.03 6.20 -51.93 -0.32 0.71 16 22 C -0.14 -2.21 9.25 37.15 0.34 -1.87 16 23 N -0.84 -12.42 7.91 -4.67 -0.04 -12.45 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 27 H 0.04 0.97 6.46 -51.93 -0.34 0.63 16 28 H 0.06 1.01 6.32 -51.93 -0.33 0.68 16 29 H 0.03 0.72 5.83 -51.92 -0.30 0.41 16 30 H 0.02 0.50 5.33 -51.93 -0.28 0.22 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 33 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.17 2.58 7.95 -52.49 -0.42 2.16 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 38 H 0.33 4.27 8.99 -39.29 -0.35 3.92 16 39 H 0.35 5.30 8.49 -39.29 -0.33 4.96 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -27.65 312.47 -8.31 -35.96 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.72 Total: 10.71 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.05 Total: -16.40 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.08 Total: -49.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.65 Total: 16.13 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.51 Total: -2.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.65 -8.31 -35.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249837724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.817 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds