Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47509 * 2 1 4 4 C 1.50697 * 109.46951 * 239.99991 * 2 1 3 5 5 H 1.08003 * 120.00467 * 239.72429 * 4 2 1 6 6 C 1.37884 * 119.99808 * 60.00234 * 4 2 1 7 7 N 1.31512 * 119.99683 * 359.72296 * 6 4 2 8 8 Si 1.86805 * 119.99749 * 179.72214 * 6 4 2 9 9 H 1.48503 * 109.47152 * 60.00364 * 8 6 4 10 10 H 1.48495 * 109.46675 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47200 * 300.00154 * 8 6 4 12 12 N 1.46906 * 109.47067 * 120.00515 * 2 1 3 13 13 C 1.46902 * 110.99955 * 54.10682 * 12 2 1 14 14 C 1.46898 * 110.99590 * 290.15684 * 12 2 1 15 15 H 1.09002 * 109.47277 * 87.22765 * 14 12 2 16 16 C 1.50693 * 109.47276 * 327.22325 * 14 12 2 17 17 C 1.38428 * 122.54252 * 132.65663 * 16 14 12 18 18 C 1.33387 * 114.92363 * 179.75868 * 17 16 14 19 19 S 1.75884 * 109.59145 * 0.47637 * 18 17 16 20 20 C 1.33388 * 122.53939 * 312.93805 * 16 14 12 21 21 C 1.53005 * 109.46818 * 207.22390 * 14 12 2 22 22 H 1.08995 * 109.47214 * 62.83096 * 21 14 12 23 23 C 1.53001 * 109.47139 * 302.82886 * 21 14 12 24 24 N 1.46907 * 109.46924 * 182.83415 * 21 14 12 25 25 H 1.08999 * 109.47119 * 53.28148 * 1 2 3 26 26 H 1.09001 * 109.47146 * 173.28861 * 1 2 3 27 27 H 1.09008 * 109.46972 * 293.28597 * 1 2 3 28 28 H 0.97001 * 119.99629 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47107 * 51.47592 * 13 12 2 30 30 H 1.09006 * 109.46648 * 171.47051 * 13 12 2 31 31 H 1.08996 * 109.47508 * 291.47252 * 13 12 2 32 32 H 1.08001 * 122.53488 * 359.97438 * 17 16 14 33 33 H 1.08001 * 125.20394 * 180.20332 * 18 17 16 34 34 H 1.07998 * 125.20633 * 359.97438 * 20 16 14 35 35 H 1.09003 * 109.46944 * 76.78091 * 23 21 14 36 36 H 1.09000 * 109.47331 * 196.77896 * 23 21 14 37 37 H 1.09004 * 109.47104 * 316.78647 * 23 21 14 38 38 H 1.00898 * 110.99321 * 299.99629 * 24 21 14 39 39 H 1.00895 * 110.99957 * 63.95115 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6568 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9386 0.8269 -2.6033 8 14 2.3282 -1.1153 -4.0080 9 1 1.8392 -2.5176 -4.0105 10 1 1.8326 -0.4156 -5.2204 11 1 3.8132 -1.1089 -4.0055 12 7 2.0196 -0.6926 1.1994 13 6 1.4371 -2.0370 1.3057 14 6 1.7495 0.0953 2.4094 15 1 0.7530 -0.1413 2.7822 16 6 1.8271 1.5638 2.0803 17 6 0.8595 2.4690 2.4813 18 6 1.0826 3.7310 2.1114 19 16 2.5802 3.8205 1.1934 20 6 2.8306 2.0892 1.3758 21 6 2.7884 -0.2428 3.4806 22 1 3.7799 0.0404 3.1275 23 6 2.7580 -1.7460 3.7640 24 7 2.4785 0.4941 4.7131 25 1 -0.3633 0.6144 -0.8237 26 1 -0.3633 -1.0206 -0.1201 27 1 -0.3633 0.4063 0.9440 28 1 0.7046 1.1585 -3.4843 29 1 1.5811 -2.5707 0.3663 30 1 1.9270 -2.5825 2.1123 31 1 0.3710 -1.9553 1.5175 32 1 -0.0084 2.1760 3.0534 33 1 0.4396 4.5688 2.3370 34 1 3.6688 1.5361 0.9785 35 1 3.2664 -2.2777 2.9597 36 1 3.2626 -1.9480 4.7088 37 1 1.7233 -2.0834 3.8253 38 1 2.4923 1.4901 4.5520 39 1 1.5918 0.2020 5.0958 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251551646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = 58.104758 kcal Electronic energy + Delta-G solvation = -19803.425303 eV Core-core repulsion = 17066.568195 eV Total energy + Delta-G solvation = -2736.857108 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53665 -36.11590 -35.02007 -32.42677 -29.70842 -29.32200 -27.75207 -26.64076 -25.15004 -24.03043 -22.50537 -20.33655 -19.31827 -18.09572 -17.30315 -16.11418 -15.75789 -15.48212 -14.50029 -14.25472 -14.20643 -13.54818 -13.28448 -12.76927 -12.69360 -12.31053 -12.15137 -11.92267 -11.81253 -11.57233 -11.26437 -11.10678 -10.90816 -10.79425 -10.69394 -10.45473 -10.29588 -10.13861 -9.97886 -9.70906 -9.01905 -8.46772 -8.43584 -8.02670 -7.75644 -7.13569 -5.96786 -3.99137 1.49950 2.13879 2.45418 3.15030 3.32768 3.37460 3.40092 4.42703 4.80710 5.00504 5.25942 5.34781 5.46753 5.54573 5.65558 5.71199 5.93844 5.95804 6.11473 6.15779 6.19200 6.37124 6.41105 6.54228 6.57751 6.74588 6.84333 6.86755 6.92336 6.98323 7.23190 7.34881 7.57085 7.67451 7.74011 7.87471 8.21189 8.41398 8.65348 9.06376 9.64414 11.10058 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.008438 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.903581 B = 3317.387562 C = 4392.898444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.196 3.804 3 H 0.064 0.936 4 C -0.499 4.499 5 H 0.059 0.941 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.522 5.522 13 C 0.016 3.984 14 C 0.114 3.886 15 H 0.036 0.964 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.225 4.225 19 S 0.081 5.919 20 C -0.154 4.154 21 C 0.102 3.898 22 H 0.084 0.916 23 C -0.143 4.143 24 N -0.842 5.842 25 H 0.080 0.920 26 H 0.026 0.974 27 H 0.003 0.997 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.010 0.990 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.339 0.661 39 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 2.430 11.145 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.090 3.910 3 H 0.081 0.919 4 C -0.538 4.538 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.246 5.246 13 C -0.132 4.132 14 C 0.001 3.999 15 H 0.054 0.946 16 C -0.119 4.119 17 C -0.154 4.154 18 C -0.361 4.361 19 S 0.345 5.655 20 C -0.290 4.290 21 C -0.010 4.010 22 H 0.102 0.898 23 C -0.200 4.200 24 N -0.369 5.369 25 H 0.099 0.901 26 H 0.045 0.955 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.186 0.814 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.776 3.350 10.534 11.397 hybrid contribution -2.564 -1.092 -0.982 2.955 sum 0.212 2.258 9.552 9.817 Atomic orbital electron populations 1.22312 1.01163 0.99737 0.98855 1.19736 0.89620 0.96144 0.85546 0.91896 1.21088 1.30428 1.12489 0.89819 0.92266 1.24900 0.95350 0.95142 0.98798 1.69904 1.36820 1.23091 1.23258 0.86663 0.79211 0.79625 0.82473 1.20508 1.21492 1.20327 1.62374 1.58491 1.01974 1.01722 1.22736 0.95910 0.92055 1.02523 1.21177 0.96911 0.88234 0.93598 0.94609 1.18706 0.94867 0.96288 1.02045 1.19956 1.00014 0.92245 1.03197 1.25343 1.02440 1.00912 1.07378 1.84100 1.19989 1.07258 1.54171 1.25438 1.04419 0.95532 1.03625 1.21438 0.98672 0.93841 0.87084 0.89813 1.22057 1.01216 0.95329 1.01430 1.59191 1.38348 1.09983 1.29419 0.90150 0.95513 0.97838 0.93134 0.90910 0.91749 0.97115 0.85467 0.82645 0.81381 0.90713 0.92799 0.93300 0.84807 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 7.91 37.16 0.29 -3.64 16 2 C 0.20 4.70 1.72 -68.86 -0.12 4.59 16 3 H 0.06 1.61 4.29 -51.93 -0.22 1.39 16 4 C -0.50 -13.40 7.83 -34.44 -0.27 -13.67 16 5 H 0.06 1.60 7.16 -52.48 -0.38 1.22 16 6 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 7 N -0.89 -25.28 11.39 55.43 0.63 -24.65 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.52 -10.52 4.33 -229.69 -1.00 -11.51 16 13 C 0.02 0.30 7.78 60.07 0.47 0.77 16 14 C 0.11 1.95 1.21 -68.87 -0.08 1.87 16 15 H 0.04 0.64 7.31 -51.93 -0.38 0.26 16 16 C -0.11 -1.85 2.09 -106.25 -0.22 -2.07 16 17 C -0.12 -1.93 9.57 -41.21 -0.39 -2.33 16 18 C -0.23 -3.36 11.23 29.04 0.33 -3.04 16 19 S 0.08 1.29 23.34 -107.50 -2.51 -1.22 16 20 C -0.15 -2.77 7.98 29.04 0.23 -2.54 16 21 C 0.10 1.51 3.15 -67.71 -0.21 1.30 16 22 H 0.08 1.36 8.06 -51.93 -0.42 0.95 16 23 C -0.14 -1.95 7.67 37.16 0.29 -1.67 16 24 N -0.84 -10.89 9.23 -4.66 -0.04 -10.93 16 25 H 0.08 2.18 6.27 -51.93 -0.33 1.86 16 26 H 0.03 0.64 6.93 -51.93 -0.36 0.28 16 27 H 0.00 0.06 6.59 -51.92 -0.34 -0.28 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.51 6.66 -51.93 -0.35 1.17 16 30 H 0.06 1.03 3.91 -51.93 -0.20 0.83 16 31 H 0.01 0.20 6.71 -51.93 -0.35 -0.15 16 32 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.17 3.20 8.05 -52.49 -0.42 2.78 16 35 H 0.07 1.07 6.59 -51.93 -0.34 0.73 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 38 H 0.34 4.39 7.95 -39.29 -0.31 4.08 16 39 H 0.33 3.89 8.98 -39.29 -0.35 3.54 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -27.76 307.63 -8.61 -36.37 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.52 Total: 9.85 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 0.21 Total: -18.90 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.41 Total: -47.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.76 -8.61 -36.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251551646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.476 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds