Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47509 * 2 1 4 4 C 1.50697 * 109.46951 * 239.99991 * 2 1 3 5 5 H 1.08003 * 120.00467 * 239.72429 * 4 2 1 6 6 C 1.37884 * 119.99808 * 60.00234 * 4 2 1 7 7 N 1.31512 * 119.99683 * 359.72296 * 6 4 2 8 8 Si 1.86805 * 119.99749 * 179.72214 * 6 4 2 9 9 H 1.48503 * 109.47152 * 60.00364 * 8 6 4 10 10 H 1.48495 * 109.46675 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47200 * 300.00154 * 8 6 4 12 12 N 1.46906 * 109.47067 * 120.00515 * 2 1 3 13 13 C 1.46902 * 110.99955 * 54.10682 * 12 2 1 14 14 C 1.46898 * 110.99590 * 290.15684 * 12 2 1 15 15 H 1.09002 * 109.47277 * 87.22765 * 14 12 2 16 16 C 1.50693 * 109.47276 * 327.22325 * 14 12 2 17 17 C 1.38428 * 122.54252 * 132.65663 * 16 14 12 18 18 C 1.33387 * 114.92363 * 179.75868 * 17 16 14 19 19 S 1.75884 * 109.59145 * 0.47637 * 18 17 16 20 20 C 1.33388 * 122.53939 * 312.93805 * 16 14 12 21 21 C 1.53005 * 109.46818 * 207.22390 * 14 12 2 22 22 H 1.08995 * 109.47214 * 62.83096 * 21 14 12 23 23 C 1.53001 * 109.47139 * 302.82886 * 21 14 12 24 24 N 1.46907 * 109.46924 * 182.83415 * 21 14 12 25 25 H 1.08999 * 109.47119 * 53.28148 * 1 2 3 26 26 H 1.09001 * 109.47146 * 173.28861 * 1 2 3 27 27 H 1.09008 * 109.46972 * 293.28597 * 1 2 3 28 28 H 0.97001 * 119.99629 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47107 * 51.47592 * 13 12 2 30 30 H 1.09006 * 109.46648 * 171.47051 * 13 12 2 31 31 H 1.08996 * 109.47508 * 291.47252 * 13 12 2 32 32 H 1.08001 * 122.53488 * 359.97438 * 17 16 14 33 33 H 1.08001 * 125.20394 * 180.20332 * 18 17 16 34 34 H 1.07998 * 125.20633 * 359.97438 * 20 16 14 35 35 H 1.09003 * 109.46944 * 76.78091 * 23 21 14 36 36 H 1.09000 * 109.47331 * 196.77896 * 23 21 14 37 37 H 1.09004 * 109.47104 * 316.78647 * 23 21 14 38 38 H 1.00898 * 110.99321 * 299.99629 * 24 21 14 39 39 H 1.00895 * 110.99957 * 63.95115 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6568 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9386 0.8269 -2.6033 8 14 2.3282 -1.1153 -4.0080 9 1 1.8392 -2.5176 -4.0105 10 1 1.8326 -0.4156 -5.2204 11 1 3.8132 -1.1089 -4.0055 12 7 2.0196 -0.6926 1.1994 13 6 1.4371 -2.0370 1.3057 14 6 1.7495 0.0953 2.4094 15 1 0.7530 -0.1413 2.7822 16 6 1.8271 1.5638 2.0803 17 6 0.8595 2.4690 2.4813 18 6 1.0826 3.7310 2.1114 19 16 2.5802 3.8205 1.1934 20 6 2.8306 2.0892 1.3758 21 6 2.7884 -0.2428 3.4806 22 1 3.7799 0.0404 3.1275 23 6 2.7580 -1.7460 3.7640 24 7 2.4785 0.4941 4.7131 25 1 -0.3633 0.6144 -0.8237 26 1 -0.3633 -1.0206 -0.1201 27 1 -0.3633 0.4063 0.9440 28 1 0.7046 1.1585 -3.4843 29 1 1.5811 -2.5707 0.3663 30 1 1.9270 -2.5825 2.1123 31 1 0.3710 -1.9553 1.5175 32 1 -0.0084 2.1760 3.0534 33 1 0.4396 4.5688 2.3370 34 1 3.6688 1.5361 0.9785 35 1 3.2664 -2.2777 2.9597 36 1 3.2626 -1.9480 4.7088 37 1 1.7233 -2.0834 3.8253 38 1 2.4923 1.4901 4.5520 39 1 1.5918 0.2020 5.0958 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251551646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = 39.577080 kcal Electronic energy + Delta-G solvation = -19804.228724 eV Core-core repulsion = 17066.568195 eV Total energy + Delta-G solvation = -2737.660529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95441 -37.52820 -36.45805 -34.32177 -31.03467 -30.89872 -29.13698 -28.07701 -27.15223 -25.60270 -23.85988 -21.78070 -20.86081 -19.45582 -18.67730 -18.01839 -17.17867 -16.79137 -16.30943 -15.80348 -15.52527 -15.02067 -14.65660 -14.37637 -14.08616 -13.75392 -13.62579 -13.31851 -13.29446 -13.11990 -12.89840 -12.81047 -12.56285 -12.45440 -12.25053 -12.06420 -11.98056 -11.84672 -11.42487 -11.25488 -10.86876 -10.45899 -9.68912 -9.38240 -9.10415 -8.75351 -8.05425 -6.13050 0.21800 0.87334 1.18230 1.41197 1.41818 1.48987 1.86198 2.44069 3.23904 3.39841 3.84234 3.94113 4.24038 4.29698 4.31801 4.50929 4.63499 4.69738 4.72910 4.82437 4.84852 4.86176 4.93132 5.06118 5.17447 5.21769 5.27369 5.35782 5.47420 5.55064 5.62904 5.65806 5.80769 5.83966 6.25339 6.34215 6.56720 6.67339 6.86552 7.01634 7.54105 8.99778 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.008438 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.903581 B = 3317.387562 C = 4392.898444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.201 3.799 3 H 0.050 0.950 4 C -0.511 4.511 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.019 3.981 14 C 0.118 3.882 15 H 0.036 0.964 16 C -0.106 4.106 17 C -0.138 4.138 18 C -0.212 4.212 19 S 0.087 5.913 20 C -0.185 4.185 21 C 0.112 3.888 22 H 0.067 0.933 23 C -0.139 4.139 24 N -0.833 5.833 25 H 0.050 0.950 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.008 0.992 32 H 0.147 0.853 33 H 0.187 0.813 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.341 0.659 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 2.401 12.501 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.094 3.906 3 H 0.068 0.932 4 C -0.550 4.550 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.128 4.128 14 C 0.004 3.996 15 H 0.054 0.946 16 C -0.118 4.118 17 C -0.169 4.169 18 C -0.348 4.348 19 S 0.350 5.650 20 C -0.321 4.321 21 C -0.001 4.001 22 H 0.085 0.915 23 C -0.196 4.196 24 N -0.362 5.362 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.027 0.973 32 H 0.164 0.836 33 H 0.204 0.796 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.449 3.312 11.913 12.605 hybrid contribution -2.460 -1.049 -1.337 2.990 sum -0.011 2.263 10.575 10.815 Atomic orbital electron populations 1.22110 1.01438 0.98522 0.98362 1.19499 0.89111 0.95580 0.86424 0.93200 1.21401 1.30040 1.12260 0.91278 0.93090 1.25570 0.95699 0.95840 1.01371 1.70029 1.37861 1.24231 1.23535 0.85774 0.78707 0.78689 0.79381 1.20074 1.21323 1.19989 1.62273 1.58542 1.02549 1.01770 1.22759 0.96123 0.91503 1.02464 1.21285 0.97639 0.87966 0.92664 0.94565 1.18852 0.94888 0.96538 1.01550 1.20133 1.00417 0.92289 1.04014 1.25761 1.01735 1.01678 1.05578 1.84033 1.20859 1.05704 1.54370 1.25345 1.04701 0.96903 1.05167 1.21267 0.96971 0.94903 0.86976 0.91497 1.21992 1.01718 0.94139 1.01779 1.59154 1.39082 1.09988 1.27949 0.93132 0.96338 0.96212 0.93390 0.93280 0.88563 0.97309 0.83580 0.79565 0.83437 0.91567 0.91448 0.92575 0.84609 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.07 7.91 71.98 0.57 -6.50 16 2 C 0.20 9.76 1.72 44.17 0.08 9.83 16 3 H 0.05 2.60 4.29 -2.39 -0.01 2.59 16 4 C -0.51 -27.79 7.83 25.60 0.20 -27.59 16 5 H 0.05 2.79 7.16 -2.91 -0.02 2.77 16 6 C 0.01 0.75 5.31 84.66 0.45 1.20 16 7 N -0.92 -52.69 11.39 21.45 0.24 -52.44 16 8 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 N -0.53 -21.14 4.33 -880.59 -3.82 -24.95 16 13 C 0.02 0.72 7.78 127.69 0.99 1.71 16 14 C 0.12 3.88 1.21 44.17 0.05 3.93 16 15 H 0.04 1.21 7.31 -2.39 -0.02 1.19 16 16 C -0.11 -3.56 2.09 -20.92 -0.04 -3.60 16 17 C -0.14 -4.06 9.57 21.22 0.20 -3.86 16 18 C -0.21 -5.85 11.23 66.72 0.75 -5.10 16 19 S 0.09 2.70 23.34 -56.49 -1.32 1.38 16 20 C -0.18 -6.70 7.98 66.72 0.53 -6.17 16 21 C 0.11 3.14 3.15 44.92 0.14 3.28 16 22 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 23 C -0.14 -3.49 7.67 71.98 0.55 -2.93 16 24 N -0.83 -19.67 9.23 -168.66 -1.56 -21.23 16 25 H 0.05 2.77 6.27 -2.39 -0.01 2.75 16 26 H 0.02 0.88 6.93 -2.39 -0.02 0.86 16 27 H 0.02 0.85 6.59 -2.38 -0.02 0.83 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.05 2.03 6.66 -2.39 -0.02 2.02 16 30 H 0.10 2.92 3.91 -2.38 -0.01 2.91 16 31 H 0.01 0.32 6.71 -2.39 -0.02 0.30 16 32 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.15 5.87 8.05 -2.91 -0.02 5.85 16 35 H 0.07 1.78 6.59 -2.39 -0.02 1.77 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.33 7.02 -2.39 -0.02 1.31 16 38 H 0.34 8.11 7.95 -89.70 -0.71 7.39 16 39 H 0.34 7.03 8.98 -89.70 -0.81 6.22 16 Total: -1.00 -59.18 307.63 -0.39 -59.57 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.45 Total: 27.26 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.48 Total: -35.80 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -5.13 Total: -98.62 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.38 kcal Total: -59.18 -0.39 -59.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251551646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.144 kcal (2) G-P(sol) polarization free energy of solvation -59.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds