Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46769 * 2 1 4 4 C 1.50701 * 109.46993 * 240.00196 * 2 1 3 5 5 H 1.08000 * 119.99786 * 239.99672 * 4 2 1 6 6 C 1.37878 * 120.00062 * 60.00189 * 4 2 1 7 7 N 1.31508 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99842 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47048 * 89.99744 * 8 6 4 10 10 H 1.48496 * 109.46759 * 209.99700 * 8 6 4 11 11 H 1.48504 * 109.47084 * 329.99798 * 8 6 4 12 12 N 1.46893 * 109.47030 * 120.00164 * 2 1 3 13 13 C 1.46897 * 111.00297 * 51.06237 * 12 2 1 14 14 C 1.46901 * 111.00003 * 287.10751 * 12 2 1 15 15 H 1.08995 * 109.47085 * 39.54833 * 14 12 2 16 16 C 1.50701 * 109.47163 * 159.55007 * 14 12 2 17 17 C 1.33388 * 125.20205 * 229.31841 * 16 14 12 18 18 C 1.38421 * 114.92358 * 179.97438 * 17 16 14 19 19 C 1.33388 * 114.91895 * 359.97438 * 18 17 16 20 20 S 1.75880 * 125.20516 * 49.00727 * 16 14 12 21 21 C 1.53000 * 109.46914 * 279.54318 * 14 12 2 22 22 H 1.08999 * 109.47754 * 293.88425 * 21 14 12 23 23 C 1.53000 * 109.47171 * 173.87563 * 21 14 12 24 24 N 1.46908 * 109.47059 * 53.88459 * 21 14 12 25 25 H 1.08996 * 109.47317 * 299.99912 * 1 2 3 26 26 H 1.09000 * 109.47071 * 60.00058 * 1 2 3 27 27 H 1.09009 * 109.47299 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00667 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46935 * 288.50158 * 13 12 2 30 30 H 1.08999 * 109.47221 * 48.50158 * 13 12 2 31 31 H 1.08997 * 109.47487 * 168.50355 * 13 12 2 32 32 H 1.08005 * 122.53971 * 359.97438 * 17 16 14 33 33 H 1.07998 * 122.54317 * 179.97438 * 18 17 16 34 34 H 1.08003 * 125.20395 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.46960 * 60.00243 * 23 21 14 36 36 H 1.08999 * 109.47485 * 300.01027 * 23 21 14 37 37 H 1.08997 * 109.47736 * 180.02562 * 23 21 14 38 38 H 1.00900 * 111.00402 * 165.74121 * 24 21 14 39 39 H 1.00906 * 110.99437 * 289.69146 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 1.3825 -2.0081 1.3447 14 6 1.8147 0.1272 2.4011 15 1 0.8491 0.6289 2.3384 16 6 1.8439 -0.7554 3.6222 17 6 0.9324 -0.7511 4.5961 18 6 1.1684 -1.6523 5.6199 19 6 2.2713 -2.3887 5.4773 20 16 3.0809 -1.9542 3.9775 21 6 2.9273 1.1728 2.5009 22 1 3.8808 0.6735 2.6726 23 6 2.6319 2.1222 3.6638 24 7 2.9938 1.9382 1.2488 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7081 1.1609 -3.4843 29 1 0.3395 -1.8769 1.6328 30 1 1.4329 -2.5430 0.3962 31 1 1.9023 -2.5808 2.1127 32 1 0.0751 -0.0943 4.5864 33 1 0.5095 -1.7515 6.4699 34 1 2.6129 -3.1399 6.1741 35 1 2.5825 1.5544 4.5929 36 1 1.6784 2.6215 3.4921 37 1 3.4242 2.8674 3.7347 38 1 3.5479 2.7734 1.3645 39 1 3.3503 1.3691 0.4957 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251648810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = 57.318071 kcal Electronic energy + Delta-G solvation = -19509.425666 eV Core-core repulsion = 16772.534444 eV Total energy + Delta-G solvation = -2736.891222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.85137 -36.86785 -34.64045 -32.65014 -30.60177 -28.20812 -28.01805 -26.37376 -25.11904 -24.08153 -22.47947 -20.28593 -19.16153 -18.96291 -16.89899 -15.92527 -15.77388 -15.07968 -14.89106 -14.45663 -14.20026 -13.58284 -13.10450 -12.77681 -12.51955 -12.42790 -12.31041 -12.08667 -11.65842 -11.58226 -11.31215 -11.18595 -10.95953 -10.82868 -10.53539 -10.50489 -10.40434 -10.17442 -9.94510 -9.68845 -8.78043 -8.44930 -8.31865 -8.03675 -7.80175 -7.07204 -5.91499 -3.94176 1.23996 1.91102 2.32993 2.95947 3.34473 3.41495 3.45034 4.46675 4.82702 4.99580 5.19934 5.34437 5.39730 5.45120 5.69069 5.72115 5.75575 5.82121 6.03816 6.21352 6.26208 6.29246 6.34820 6.50083 6.50286 6.58503 6.69929 6.83200 6.94589 7.03003 7.33097 7.63653 7.75228 7.84141 7.92857 8.11592 8.40190 8.48810 8.69929 9.13065 9.69249 11.14592 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.006252 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.341424 B = 4477.551161 C = 4909.577233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.184 3.816 3 H 0.097 0.903 4 C -0.498 4.498 5 H 0.058 0.942 6 C 0.059 3.941 7 N -0.890 5.890 8 Si 0.891 3.109 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.024 3.976 14 C 0.151 3.849 15 H 0.065 0.935 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.132 4.132 19 C -0.241 4.241 20 S 0.128 5.872 21 C 0.107 3.893 22 H 0.034 0.966 23 C -0.148 4.148 24 N -0.837 5.837 25 H 0.004 0.996 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.258 0.742 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.323 0.677 39 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -1.605 14.324 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.078 3.922 3 H 0.114 0.886 4 C -0.537 4.537 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.125 4.125 14 C 0.040 3.960 15 H 0.082 0.918 16 C -0.261 4.261 17 C -0.184 4.184 18 C -0.163 4.163 19 C -0.377 4.377 20 S 0.392 5.608 21 C -0.005 4.005 22 H 0.052 0.948 23 C -0.206 4.206 24 N -0.372 5.372 25 H 0.023 0.977 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.728 -2.005 13.451 14.102 hybrid contribution -1.098 -0.194 0.035 1.115 sum 2.630 -2.199 13.486 13.915 Atomic orbital electron populations 1.22350 1.01343 0.98732 1.00172 1.20037 0.89813 0.97513 0.84794 0.88628 1.21147 1.30408 1.12308 0.89849 0.92388 1.24879 0.95447 0.95161 0.98689 1.69897 1.37051 1.22950 1.23076 0.86622 0.79161 0.79309 0.82991 1.21060 1.21449 1.20035 1.62560 1.58040 1.02657 1.01889 1.22486 0.95724 0.92523 1.01729 1.20262 0.98369 0.91215 0.86138 0.91774 1.24726 0.98634 1.02014 1.00750 1.20094 1.01126 1.02292 0.94886 1.20044 0.98219 0.97700 1.00351 1.25690 1.01936 1.07287 1.02780 1.84456 1.27449 1.34295 1.14564 1.21175 0.96295 0.92936 0.90114 0.94806 1.21886 1.01952 0.99029 0.97713 1.59181 1.61107 1.10354 1.06593 0.97743 0.89532 0.95788 0.93212 0.96860 0.90915 0.93101 0.84853 0.85050 0.82604 0.92467 0.92036 0.93068 0.86402 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.21 37.16 0.30 -3.80 16 2 C 0.18 4.45 1.56 -68.87 -0.11 4.34 16 3 H 0.10 2.40 4.37 -51.93 -0.23 2.18 16 4 C -0.50 -13.28 7.83 -34.44 -0.27 -13.55 16 5 H 0.06 1.58 7.40 -52.49 -0.39 1.19 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -10.99 4.36 -229.70 -1.00 -11.99 16 13 C 0.02 0.50 7.41 60.06 0.45 0.94 16 14 C 0.15 2.74 1.91 -68.86 -0.13 2.61 16 15 H 0.06 1.29 6.25 -51.93 -0.32 0.97 16 16 C -0.14 -2.27 2.94 -36.00 -0.11 -2.37 16 17 C -0.15 -2.20 9.88 -41.21 -0.41 -2.61 16 18 C -0.13 -1.66 10.18 -41.21 -0.42 -2.07 16 19 C -0.24 -2.99 11.23 29.04 0.33 -2.66 16 20 S 0.13 1.87 20.93 -107.50 -2.25 -0.39 16 21 C 0.11 1.77 3.17 -67.71 -0.21 1.56 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 C -0.15 -2.05 9.17 37.16 0.34 -1.70 16 24 N -0.84 -14.81 7.37 -4.66 -0.03 -14.85 16 25 H 0.00 0.09 6.59 -51.93 -0.34 -0.26 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.02 0.57 6.57 -51.92 -0.34 0.23 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 29 H 0.01 0.27 6.91 -51.93 -0.36 -0.09 16 30 H 0.07 1.59 6.85 -51.93 -0.36 1.24 16 31 H 0.05 0.93 5.04 -44.94 -0.23 0.71 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.32 4.85 8.85 -39.29 -0.35 4.51 16 39 H 0.37 7.37 6.79 -39.29 -0.27 7.11 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -27.61 309.51 -8.89 -36.51 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.54 Total: 12.04 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.33 Total: -17.83 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.41 Total: -51.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.25 Total: -0.39 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.61 -8.89 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251648810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.824 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds