Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46769 * 2 1 4 4 C 1.50701 * 109.46993 * 240.00196 * 2 1 3 5 5 H 1.08000 * 119.99786 * 239.99672 * 4 2 1 6 6 C 1.37878 * 120.00062 * 60.00189 * 4 2 1 7 7 N 1.31508 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99842 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47048 * 89.99744 * 8 6 4 10 10 H 1.48496 * 109.46759 * 209.99700 * 8 6 4 11 11 H 1.48504 * 109.47084 * 329.99798 * 8 6 4 12 12 N 1.46893 * 109.47030 * 120.00164 * 2 1 3 13 13 C 1.46897 * 111.00297 * 51.06237 * 12 2 1 14 14 C 1.46901 * 111.00003 * 287.10751 * 12 2 1 15 15 H 1.08995 * 109.47085 * 39.54833 * 14 12 2 16 16 C 1.50701 * 109.47163 * 159.55007 * 14 12 2 17 17 C 1.33388 * 125.20205 * 229.31841 * 16 14 12 18 18 C 1.38421 * 114.92358 * 179.97438 * 17 16 14 19 19 C 1.33388 * 114.91895 * 359.97438 * 18 17 16 20 20 S 1.75880 * 125.20516 * 49.00727 * 16 14 12 21 21 C 1.53000 * 109.46914 * 279.54318 * 14 12 2 22 22 H 1.08999 * 109.47754 * 293.88425 * 21 14 12 23 23 C 1.53000 * 109.47171 * 173.87563 * 21 14 12 24 24 N 1.46908 * 109.47059 * 53.88459 * 21 14 12 25 25 H 1.08996 * 109.47317 * 299.99912 * 1 2 3 26 26 H 1.09000 * 109.47071 * 60.00058 * 1 2 3 27 27 H 1.09009 * 109.47299 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00667 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46935 * 288.50158 * 13 12 2 30 30 H 1.08999 * 109.47221 * 48.50158 * 13 12 2 31 31 H 1.08997 * 109.47487 * 168.50355 * 13 12 2 32 32 H 1.08005 * 122.53971 * 359.97438 * 17 16 14 33 33 H 1.07998 * 122.54317 * 179.97438 * 18 17 16 34 34 H 1.08003 * 125.20395 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.46960 * 60.00243 * 23 21 14 36 36 H 1.08999 * 109.47485 * 300.01027 * 23 21 14 37 37 H 1.08997 * 109.47736 * 180.02562 * 23 21 14 38 38 H 1.00900 * 111.00402 * 165.74121 * 24 21 14 39 39 H 1.00906 * 110.99437 * 289.69146 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 1.3825 -2.0081 1.3447 14 6 1.8147 0.1272 2.4011 15 1 0.8491 0.6289 2.3384 16 6 1.8439 -0.7554 3.6222 17 6 0.9324 -0.7511 4.5961 18 6 1.1684 -1.6523 5.6199 19 6 2.2713 -2.3887 5.4773 20 16 3.0809 -1.9542 3.9775 21 6 2.9273 1.1728 2.5009 22 1 3.8808 0.6735 2.6726 23 6 2.6319 2.1222 3.6638 24 7 2.9938 1.9382 1.2488 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7081 1.1609 -3.4843 29 1 0.3395 -1.8769 1.6328 30 1 1.4329 -2.5430 0.3962 31 1 1.9023 -2.5808 2.1127 32 1 0.0751 -0.0943 4.5864 33 1 0.5095 -1.7515 6.4699 34 1 2.6129 -3.1399 6.1741 35 1 2.5825 1.5544 4.5929 36 1 1.6784 2.6215 3.4921 37 1 3.4242 2.8674 3.7347 38 1 3.5479 2.7734 1.3645 39 1 3.3503 1.3691 0.4957 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251648810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = 39.526350 kcal Electronic energy + Delta-G solvation = -19510.197173 eV Core-core repulsion = 16772.534444 eV Total energy + Delta-G solvation = -2737.662728 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28052 -38.10951 -36.18312 -34.51960 -32.10159 -29.90145 -29.25265 -27.82227 -27.18382 -25.50938 -23.77443 -21.81996 -20.70578 -20.14183 -18.42160 -17.60496 -17.20017 -16.69479 -16.30007 -15.95853 -15.56551 -15.22468 -14.63287 -14.40657 -13.98253 -13.69910 -13.61898 -13.45750 -13.18421 -12.97995 -12.81614 -12.67869 -12.59634 -12.51031 -12.32160 -12.09731 -11.93935 -11.86955 -11.54834 -11.45190 -10.72424 -10.33957 -9.57414 -9.28860 -9.17967 -8.74651 -7.99436 -6.07524 0.15726 0.80827 1.25985 1.43891 1.45928 1.55204 1.91444 2.48682 3.29230 3.39873 3.60215 4.08089 4.16885 4.30345 4.33648 4.48761 4.61719 4.68413 4.72887 4.79069 4.82788 4.90282 4.99474 5.06145 5.10561 5.18440 5.26391 5.31957 5.36371 5.45384 5.63643 5.70814 5.88814 5.91335 6.33614 6.40925 6.60220 6.77371 6.87218 7.08521 7.59230 9.05431 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.006252 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.341424 B = 4477.551161 C = 4909.577233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.189 3.811 3 H 0.089 0.911 4 C -0.507 4.507 5 H 0.048 0.952 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.530 5.530 13 C 0.033 3.967 14 C 0.157 3.843 15 H 0.041 0.959 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.137 4.137 19 C -0.221 4.221 20 S 0.104 5.896 21 C 0.109 3.891 22 H 0.031 0.969 23 C -0.137 4.137 24 N -0.847 5.847 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.257 0.743 29 H 0.006 0.994 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.188 0.812 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.338 0.662 39 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -2.299 16.286 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.082 3.918 3 H 0.106 0.894 4 C -0.546 4.546 5 H 0.066 0.934 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.253 5.253 13 C -0.116 4.116 14 C 0.046 3.954 15 H 0.059 0.941 16 C -0.290 4.290 17 C -0.176 4.176 18 C -0.167 4.167 19 C -0.357 4.357 20 S 0.368 5.632 21 C -0.003 4.003 22 H 0.049 0.951 23 C -0.195 4.195 24 N -0.382 5.382 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.205 0.795 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.214 -2.692 15.440 16.230 hybrid contribution -1.262 0.002 -0.459 1.343 sum 2.953 -2.690 14.981 15.504 Atomic orbital electron populations 1.22190 1.01988 0.97916 0.99211 1.19845 0.89078 0.97275 0.85595 0.89370 1.21377 1.30063 1.11975 0.91177 0.93406 1.25528 0.95727 0.95822 1.01204 1.70016 1.37992 1.24063 1.23476 0.85704 0.78624 0.78216 0.79863 1.21011 1.21145 1.19640 1.62447 1.57709 1.02938 1.02196 1.22410 0.95645 0.92447 1.01109 1.20168 0.97723 0.91492 0.86008 0.94107 1.24450 1.00400 1.03389 1.00761 1.20352 1.00446 1.02085 0.94722 1.20308 0.98769 0.96985 1.00687 1.26047 1.00965 1.07086 1.01561 1.84513 1.27726 1.34293 1.16697 1.21214 0.95586 0.93097 0.90446 0.95114 1.21793 1.02227 0.98799 0.96707 1.59101 1.61483 1.10892 1.06763 0.96805 0.92206 0.96403 0.93342 0.97516 0.93165 0.90934 0.84353 0.82054 0.79525 0.91591 0.92667 0.91229 0.84804 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.77 8.21 71.98 0.59 -7.18 16 2 C 0.19 9.33 1.56 44.17 0.07 9.39 16 3 H 0.09 4.55 4.37 -2.39 -0.01 4.54 16 4 C -0.51 -27.56 7.83 25.60 0.20 -27.36 16 5 H 0.05 2.64 7.40 -2.91 -0.02 2.62 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 8 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 N -0.53 -22.32 4.36 -880.62 -3.84 -26.16 16 13 C 0.03 1.35 7.41 127.69 0.95 2.29 16 14 C 0.16 5.66 1.91 44.17 0.08 5.75 16 15 H 0.04 1.66 6.25 -2.39 -0.01 1.65 16 16 C -0.17 -5.24 2.94 24.59 0.07 -5.17 16 17 C -0.14 -3.83 9.88 21.22 0.21 -3.62 16 18 C -0.14 -2.94 10.18 21.22 0.22 -2.72 16 19 C -0.22 -4.66 11.23 66.72 0.75 -3.91 16 20 S 0.10 2.83 20.93 -56.49 -1.18 1.65 16 21 C 0.11 3.54 3.17 44.91 0.14 3.68 16 22 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 23 C -0.14 -3.59 9.17 71.98 0.66 -2.93 16 24 N -0.85 -30.16 7.37 -168.66 -1.24 -31.40 16 25 H 0.01 0.63 6.59 -2.39 -0.02 0.61 16 26 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 27 H 0.02 0.86 6.57 -2.38 -0.02 0.85 16 28 H 0.26 14.16 8.31 -92.72 -0.77 13.39 16 29 H 0.01 0.26 6.91 -2.39 -0.02 0.25 16 30 H 0.05 2.24 6.85 -2.39 -0.02 2.22 16 31 H 0.07 2.63 5.04 -6.84 -0.03 2.59 16 32 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.07 1.61 7.30 -2.38 -0.02 1.59 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.34 10.03 8.85 -89.69 -0.79 9.24 16 39 H 0.35 14.45 6.79 -89.69 -0.61 13.84 16 Total: -1.00 -59.38 309.51 0.04 -59.35 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.36 Total: 33.04 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.39 Total: -30.46 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.84 Total: -109.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.18 Total: 1.65 kcal Total: -59.38 0.04 -59.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251648810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.872 kcal (2) G-P(sol) polarization free energy of solvation -59.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds