Wall clock time and date at job start Mon Mar 30 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47413 * 2 1 4 4 C 1.50698 * 109.46900 * 240.00124 * 2 1 3 5 5 H 1.07995 * 120.00653 * 239.99706 * 4 2 1 6 6 C 1.37884 * 119.99944 * 60.00611 * 4 2 1 7 7 N 1.31516 * 119.99890 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47311 * 119.99748 * 8 6 4 11 11 H 1.48500 * 109.46896 * 239.99748 * 8 6 4 12 12 N 1.46901 * 109.47008 * 120.00548 * 2 1 3 13 13 C 1.46898 * 110.99847 * 179.84209 * 12 2 1 14 14 C 1.46899 * 110.99785 * 303.79781 * 12 2 1 15 15 H 1.08998 * 109.47112 * 68.24036 * 14 12 2 16 16 C 1.50703 * 109.46967 * 308.23692 * 14 12 2 17 17 C 1.33393 * 125.19897 * 129.97066 * 16 14 12 18 18 C 1.38417 * 114.91800 * 179.97438 * 17 16 14 19 19 C 1.33389 * 114.92292 * 359.97438 * 18 17 16 20 20 S 1.75882 * 125.20509 * 309.94566 * 16 14 12 21 21 C 1.53007 * 109.46801 * 188.24035 * 14 12 2 22 22 H 1.09004 * 109.46823 * 59.46371 * 21 14 12 23 23 C 1.53002 * 109.47120 * 299.46107 * 21 14 12 24 24 N 1.46902 * 109.46814 * 179.45910 * 21 14 12 25 25 H 1.08995 * 109.47601 * 185.39500 * 1 2 3 26 26 H 1.08994 * 109.47151 * 305.39715 * 1 2 3 27 27 H 1.09007 * 109.47018 * 65.39236 * 1 2 3 28 28 H 0.97001 * 119.99867 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46927 * 182.42830 * 13 12 2 30 30 H 1.08998 * 109.47412 * 302.42643 * 13 12 2 31 31 H 1.08992 * 109.47164 * 62.42875 * 13 12 2 32 32 H 1.08001 * 122.53876 * 359.95449 * 17 16 14 33 33 H 1.08004 * 122.53577 * 180.02562 * 18 17 16 34 34 H 1.08002 * 125.20196 * 180.25979 * 19 18 17 35 35 H 1.09000 * 109.47220 * 54.95005 * 23 21 14 36 36 H 1.08994 * 109.46807 * 174.95088 * 23 21 14 37 37 H 1.09000 * 109.47077 * 294.95449 * 23 21 14 38 38 H 1.00891 * 111.00107 * 299.99753 * 24 21 14 39 39 H 1.00899 * 110.99854 * 63.95755 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1677 -1.5862 -4.8166 11 1 3.1471 -0.1854 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 3.4881 -0.7155 1.2314 14 6 1.4758 -0.0810 2.4193 15 1 0.4034 -0.2685 2.4727 16 6 1.7253 1.4049 2.3904 17 6 0.8041 2.3437 2.6127 18 6 1.2674 3.6457 2.5335 19 6 2.5649 3.7642 2.2474 20 16 3.2757 2.1665 2.0591 21 6 2.1616 -0.6896 3.6442 22 1 3.2352 -0.5105 3.5859 23 6 1.8971 -2.1962 3.6808 24 7 1.6270 -0.0688 4.8635 25 1 -0.3634 -1.0230 0.0966 26 1 -0.3633 0.5952 0.8377 27 1 -0.3633 0.4280 -0.9344 28 1 0.7082 1.1612 -3.4844 29 1 3.8237 -1.2713 2.1070 30 1 3.8638 -1.1977 0.3290 31 1 3.8663 0.3054 1.2822 32 1 -0.2252 2.1060 2.8372 33 1 0.6270 4.5008 2.6921 34 1 3.0981 4.6983 2.1500 35 1 2.2126 -2.6435 2.7382 36 1 2.4582 -2.6437 4.5011 37 1 0.8321 -2.3746 3.8291 38 1 1.7894 0.9270 4.8633 39 1 0.6456 -0.2752 4.9739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251648814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:27 Heat of formation + Delta-G solvation = 45.279740 kcal Electronic energy + Delta-G solvation = -19712.175580 eV Core-core repulsion = 16974.762337 eV Total energy + Delta-G solvation = -2737.413243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07806 -36.67712 -34.96987 -32.57204 -29.71315 -29.45892 -28.29715 -26.37073 -24.78515 -23.71767 -22.79208 -20.50226 -19.34075 -18.86446 -16.71326 -16.26779 -15.94437 -15.16272 -15.03152 -14.48440 -14.22843 -13.72359 -13.06220 -12.91922 -12.80240 -12.38547 -12.28957 -12.05132 -11.63395 -11.48023 -11.34892 -11.17374 -10.99989 -10.94404 -10.68159 -10.46024 -10.25498 -10.07606 -10.03993 -9.85884 -8.97090 -8.57198 -8.45337 -8.15692 -7.99475 -7.24395 -6.00674 -4.05561 1.42732 2.07406 2.45462 3.14756 3.28531 3.36676 3.40457 4.39172 4.75416 4.97888 5.01996 5.30610 5.37229 5.44853 5.48151 5.74814 5.85031 5.91859 5.98482 6.04615 6.19943 6.29447 6.41320 6.51493 6.57758 6.68204 6.71687 6.83637 6.86904 7.03229 7.11336 7.30452 7.49953 7.60365 7.68047 7.81082 8.14933 8.30340 8.54426 9.00465 9.58935 11.05348 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.007777 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.317908 B = 3599.339595 C = 4275.980938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.209 3.791 3 H 0.014 0.986 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.515 5.515 13 C 0.024 3.976 14 C 0.116 3.884 15 H 0.092 0.908 16 C -0.179 4.179 17 C -0.146 4.146 18 C -0.133 4.133 19 C -0.245 4.245 20 S 0.123 5.877 21 C 0.091 3.909 22 H 0.081 0.919 23 C -0.136 4.136 24 N -0.840 5.840 25 H 0.030 0.970 26 H 0.007 0.993 27 H 0.086 0.914 28 H 0.259 0.741 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.019 0.981 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.339 0.661 39 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 1.836 11.563 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.103 3.897 3 H 0.031 0.969 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.238 5.238 13 C -0.126 4.126 14 C 0.002 3.998 15 H 0.110 0.890 16 C -0.299 4.299 17 C -0.177 4.177 18 C -0.164 4.164 19 C -0.380 4.380 20 S 0.387 5.613 21 C -0.021 4.021 22 H 0.099 0.901 23 C -0.194 4.194 24 N -0.368 5.368 25 H 0.049 0.951 26 H 0.026 0.974 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.486 0.478 11.449 11.978 hybrid contribution -1.647 1.830 -1.471 2.868 sum 1.840 2.308 9.978 10.405 Atomic orbital electron populations 1.21835 0.97990 0.98457 1.00937 1.19355 0.92209 0.92815 0.85296 0.96889 1.21166 1.30931 1.12199 0.89768 0.91943 1.24916 0.95278 0.95072 0.98949 1.69909 1.36884 1.22998 1.23192 0.86508 0.78599 0.79627 0.83079 1.19743 1.21097 1.21203 1.62528 1.06958 1.52573 1.01713 1.22621 0.89373 0.98347 1.02225 1.21478 1.00907 0.84008 0.93377 0.89022 1.25586 0.96342 1.01191 1.06768 1.19992 0.99990 0.91898 1.05793 1.20004 0.95067 0.97448 1.03874 1.25914 0.99589 1.02422 1.10042 1.84465 1.11539 0.96438 1.68871 1.21650 0.99095 0.95035 0.86368 0.90131 1.21721 1.01311 0.93953 1.02382 1.59132 1.22106 1.17122 1.38462 0.95117 0.97420 0.89516 0.93120 0.92693 0.89917 0.96319 0.85263 0.85362 0.82988 0.90381 0.92962 0.93145 0.84815 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.48 37.16 0.32 -2.92 16 2 C 0.21 5.07 1.57 -68.87 -0.11 4.97 16 3 H 0.01 0.36 6.35 -51.93 -0.33 0.03 16 4 C -0.50 -13.44 7.90 -34.44 -0.27 -13.72 16 5 H 0.06 1.67 6.67 -52.49 -0.35 1.32 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 7 N -0.89 -25.32 11.29 55.43 0.63 -24.70 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.52 -10.34 3.97 -229.69 -0.91 -11.25 16 13 C 0.02 0.44 8.09 60.06 0.49 0.93 16 14 C 0.12 1.97 1.56 -68.86 -0.11 1.86 16 15 H 0.09 1.63 6.82 -51.93 -0.35 1.27 16 16 C -0.18 -3.04 2.31 -36.00 -0.08 -3.12 16 17 C -0.15 -2.36 9.42 -41.21 -0.39 -2.75 16 18 C -0.13 -2.04 10.18 -41.21 -0.42 -2.46 16 19 C -0.24 -3.79 11.23 29.04 0.33 -3.46 16 20 S 0.12 2.06 18.97 -107.50 -2.04 0.02 16 21 C 0.09 1.31 2.44 -67.71 -0.17 1.15 16 22 H 0.08 1.23 6.25 -51.93 -0.32 0.91 16 23 C -0.14 -1.88 9.08 37.16 0.34 -1.54 16 24 N -0.84 -10.76 9.21 -4.66 -0.04 -10.80 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.15 6.05 -51.93 -0.31 -0.16 16 27 H 0.09 2.34 5.94 -51.92 -0.31 2.03 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 0.88 5.48 -51.93 -0.28 0.60 16 30 H 0.08 1.67 6.38 -51.93 -0.33 1.34 16 31 H 0.02 0.36 4.24 -29.65 -0.13 0.23 16 32 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 33 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.08 1.19 6.87 -51.93 -0.36 0.83 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 4.38 7.92 -39.30 -0.31 4.07 16 39 H 0.34 3.90 8.98 -39.29 -0.35 3.55 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -28.00 306.72 -8.36 -36.36 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.42 Total: 9.10 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.17 Total: -19.56 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.33 Total: -46.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.04 Total: 0.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.00 -8.36 -36.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251648814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.636 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds