Wall clock time and date at job start Mon Mar 30 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47413 * 2 1 4 4 C 1.50698 * 109.46900 * 240.00124 * 2 1 3 5 5 H 1.07995 * 120.00653 * 239.99706 * 4 2 1 6 6 C 1.37884 * 119.99944 * 60.00611 * 4 2 1 7 7 N 1.31516 * 119.99890 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47311 * 119.99748 * 8 6 4 11 11 H 1.48500 * 109.46896 * 239.99748 * 8 6 4 12 12 N 1.46901 * 109.47008 * 120.00548 * 2 1 3 13 13 C 1.46898 * 110.99847 * 179.84209 * 12 2 1 14 14 C 1.46899 * 110.99785 * 303.79781 * 12 2 1 15 15 H 1.08998 * 109.47112 * 68.24036 * 14 12 2 16 16 C 1.50703 * 109.46967 * 308.23692 * 14 12 2 17 17 C 1.33393 * 125.19897 * 129.97066 * 16 14 12 18 18 C 1.38417 * 114.91800 * 179.97438 * 17 16 14 19 19 C 1.33389 * 114.92292 * 359.97438 * 18 17 16 20 20 S 1.75882 * 125.20509 * 309.94566 * 16 14 12 21 21 C 1.53007 * 109.46801 * 188.24035 * 14 12 2 22 22 H 1.09004 * 109.46823 * 59.46371 * 21 14 12 23 23 C 1.53002 * 109.47120 * 299.46107 * 21 14 12 24 24 N 1.46902 * 109.46814 * 179.45910 * 21 14 12 25 25 H 1.08995 * 109.47601 * 185.39500 * 1 2 3 26 26 H 1.08994 * 109.47151 * 305.39715 * 1 2 3 27 27 H 1.09007 * 109.47018 * 65.39236 * 1 2 3 28 28 H 0.97001 * 119.99867 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46927 * 182.42830 * 13 12 2 30 30 H 1.08998 * 109.47412 * 302.42643 * 13 12 2 31 31 H 1.08992 * 109.47164 * 62.42875 * 13 12 2 32 32 H 1.08001 * 122.53876 * 359.95449 * 17 16 14 33 33 H 1.08004 * 122.53577 * 180.02562 * 18 17 16 34 34 H 1.08002 * 125.20196 * 180.25979 * 19 18 17 35 35 H 1.09000 * 109.47220 * 54.95005 * 23 21 14 36 36 H 1.08994 * 109.46807 * 174.95088 * 23 21 14 37 37 H 1.09000 * 109.47077 * 294.95449 * 23 21 14 38 38 H 1.00891 * 111.00107 * 299.99753 * 24 21 14 39 39 H 1.00899 * 110.99854 * 63.95755 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1677 -1.5862 -4.8166 11 1 3.1471 -0.1854 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 3.4881 -0.7155 1.2314 14 6 1.4758 -0.0810 2.4193 15 1 0.4034 -0.2685 2.4727 16 6 1.7253 1.4049 2.3904 17 6 0.8041 2.3437 2.6127 18 6 1.2674 3.6457 2.5335 19 6 2.5649 3.7642 2.2474 20 16 3.2757 2.1665 2.0591 21 6 2.1616 -0.6896 3.6442 22 1 3.2352 -0.5105 3.5859 23 6 1.8971 -2.1962 3.6808 24 7 1.6270 -0.0688 4.8635 25 1 -0.3634 -1.0230 0.0966 26 1 -0.3633 0.5952 0.8377 27 1 -0.3633 0.4280 -0.9344 28 1 0.7082 1.1612 -3.4844 29 1 3.8237 -1.2713 2.1070 30 1 3.8638 -1.1977 0.3290 31 1 3.8663 0.3054 1.2822 32 1 -0.2252 2.1060 2.8372 33 1 0.6270 4.5008 2.6921 34 1 3.0981 4.6983 2.1500 35 1 2.2126 -2.6435 2.7382 36 1 2.4582 -2.6437 4.5011 37 1 0.8321 -2.3746 3.8291 38 1 1.7894 0.9270 4.8633 39 1 0.6456 -0.2752 4.9739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251648814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:27 Heat of formation + Delta-G solvation = 26.770314 kcal Electronic energy + Delta-G solvation = -19712.978209 eV Core-core repulsion = 16974.762337 eV Total energy + Delta-G solvation = -2738.215872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48278 -37.98088 -36.46421 -34.41161 -31.22851 -31.01437 -29.53412 -27.89208 -26.64465 -25.23693 -24.09832 -22.05955 -20.75581 -20.19769 -18.39341 -17.84150 -17.27743 -16.71713 -16.39610 -15.99639 -15.82780 -15.21213 -14.49972 -14.32651 -14.25715 -13.95405 -13.61166 -13.41347 -13.16628 -12.98280 -12.74910 -12.70360 -12.59584 -12.47420 -12.32225 -12.08066 -12.01927 -11.93260 -11.60820 -11.28228 -10.90417 -10.48894 -9.74741 -9.47242 -9.29049 -8.84686 -8.08236 -6.19070 0.16888 0.80199 1.19786 1.39428 1.42160 1.52792 1.91244 2.42530 3.19615 3.35146 3.71324 3.80925 4.12318 4.24310 4.26688 4.50506 4.58585 4.65823 4.67566 4.75268 4.81526 4.95528 5.05720 5.08521 5.12359 5.21999 5.25783 5.31289 5.43622 5.48688 5.55720 5.64806 5.75494 5.81023 6.21594 6.31376 6.38500 6.60464 6.73279 6.96085 7.49215 8.96606 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.007777 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.317908 B = 3599.339595 C = 4275.980938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.219 3.781 3 H -0.014 1.014 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.519 5.519 13 C 0.025 3.975 14 C 0.120 3.880 15 H 0.085 0.915 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.243 4.243 20 S 0.093 5.907 21 C 0.102 3.898 22 H 0.074 0.926 23 C -0.132 4.132 24 N -0.832 5.832 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.258 0.742 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.341 0.659 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 1.849 12.638 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 H 0.003 0.997 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.242 5.242 13 C -0.124 4.124 14 C 0.007 3.993 15 H 0.103 0.897 16 C -0.312 4.312 17 C -0.180 4.180 18 C -0.170 4.170 19 C -0.378 4.378 20 S 0.357 5.643 21 C -0.011 4.011 22 H 0.092 0.908 23 C -0.189 4.189 24 N -0.360 5.360 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.193 0.807 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.541 0.479 12.549 13.048 hybrid contribution -1.681 1.883 -1.733 3.061 sum 1.860 2.362 10.816 11.226 Atomic orbital electron populations 1.21643 0.98076 0.98228 1.00020 1.19040 0.91972 0.91344 0.86430 0.99652 1.21483 1.30608 1.12039 0.91096 0.92459 1.25633 0.95576 0.95769 1.01671 1.70034 1.37951 1.24238 1.23627 0.85584 0.78065 0.78694 0.79750 1.19113 1.20883 1.21034 1.62388 1.07757 1.52461 1.01555 1.22603 0.88593 0.98742 1.02431 1.21498 1.00530 0.84380 0.92900 0.89726 1.25536 0.96547 1.01180 1.07893 1.20271 1.00418 0.92274 1.05082 1.20315 0.95381 0.97942 1.03329 1.26202 0.99798 1.02307 1.09520 1.84479 1.12216 0.98099 1.69549 1.21515 0.98453 0.95386 0.85748 0.90753 1.21674 1.01883 0.93293 1.02097 1.59111 1.22811 1.17174 1.36944 0.95350 0.95645 0.92478 0.93248 0.90002 0.91951 0.96237 0.84095 0.82792 0.80691 0.91883 0.91576 0.92609 0.84664 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.48 71.98 0.61 -5.28 16 2 C 0.22 10.72 1.57 44.17 0.07 10.79 16 3 H -0.01 -0.76 6.35 -2.39 -0.02 -0.78 16 4 C -0.51 -27.79 7.90 25.60 0.20 -27.59 16 5 H 0.06 3.09 6.67 -2.91 -0.02 3.07 16 6 C 0.01 0.65 5.29 84.66 0.45 1.10 16 7 N -0.92 -52.91 11.29 21.45 0.24 -52.67 16 8 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.52 -20.71 3.97 -880.60 -3.49 -24.20 16 13 C 0.03 0.94 8.09 127.69 1.03 1.97 16 14 C 0.12 3.96 1.56 44.17 0.07 4.03 16 15 H 0.08 2.90 6.82 -2.39 -0.02 2.88 16 16 C -0.19 -6.33 2.31 24.59 0.06 -6.28 16 17 C -0.15 -4.59 9.42 21.22 0.20 -4.39 16 18 C -0.14 -3.98 10.18 21.21 0.22 -3.77 16 19 C -0.24 -7.11 11.23 66.72 0.75 -6.36 16 20 S 0.09 3.06 18.97 -56.49 -1.07 1.98 16 21 C 0.10 2.77 2.44 44.92 0.11 2.88 16 22 H 0.07 2.15 6.25 -2.38 -0.01 2.13 16 23 C -0.13 -3.39 9.08 71.98 0.65 -2.74 16 24 N -0.83 -19.51 9.21 -168.66 -1.55 -21.06 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.02 1.09 6.05 -2.39 -0.01 1.07 16 27 H 0.06 3.12 5.94 -2.38 -0.01 3.11 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.08 2.55 5.48 -2.39 -0.01 2.54 16 30 H 0.06 2.54 6.38 -2.39 -0.02 2.53 16 31 H 0.02 0.75 4.24 -16.56 -0.07 0.68 16 32 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 35 H 0.06 1.83 6.87 -2.39 -0.02 1.81 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.34 8.10 7.92 -89.70 -0.71 7.39 16 39 H 0.34 7.19 8.98 -89.69 -0.81 6.39 16 Total: -1.00 -59.31 306.72 0.06 -59.25 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.50 Total: 26.50 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.42 Total: -35.65 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.80 Total: -97.93 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.07 Total: 1.98 kcal Total: -59.31 0.06 -59.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251648814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.020 kcal (2) G-P(sol) polarization free energy of solvation -59.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds