Wall clock time and date at job start Mon Mar 30 2020 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 109.47592 * 2 1 4 4 C 1.46893 * 111.00275 * 200.01218 * 3 2 1 5 5 C 1.53000 * 109.47095 * 162.44163 * 4 3 2 6 6 C 1.46897 * 110.99832 * 76.05685 * 3 2 1 7 7 H 1.09005 * 109.46995 * 313.09918 * 6 3 2 8 8 C 1.50697 * 109.47450 * 193.09538 * 6 3 2 9 9 H 1.08003 * 119.99785 * 244.99399 * 8 6 3 10 10 C 1.37878 * 120.00124 * 64.98688 * 8 6 3 11 11 N 1.31505 * 120.00199 * 185.23944 * 10 8 6 12 12 Si 1.86804 * 119.99641 * 5.23909 * 10 8 6 13 13 H 1.48503 * 109.47057 * 84.59092 * 12 10 8 14 14 H 1.48503 * 109.46712 * 204.58272 * 12 10 8 15 15 H 1.48493 * 109.47335 * 324.58654 * 12 10 8 16 16 C 1.50708 * 109.47180 * 73.09367 * 6 3 2 17 17 S 1.76193 * 126.03394 * 73.90675 * 16 6 3 18 18 C 1.70981 * 90.28077 * 180.02562 * 17 16 6 19 19 C 1.50704 * 124.91610 * 179.97438 * 18 17 16 20 20 N 1.29028 * 110.16795 * 0.02562 * 18 17 16 21 21 C 1.31779 * 117.12309 * 359.71401 * 20 18 17 22 22 C 1.50704 * 122.75473 * 180.33259 * 21 20 18 23 23 H 1.08999 * 109.47244 * 63.06899 * 1 2 3 24 24 H 1.09002 * 109.47813 * 183.06668 * 1 2 3 25 25 H 1.09003 * 109.47508 * 303.06854 * 1 2 3 26 26 H 1.09003 * 109.47136 * 120.00217 * 2 1 3 27 27 H 1.09003 * 109.47123 * 239.99876 * 2 1 3 28 28 H 1.08999 * 109.47168 * 282.44370 * 4 3 2 29 29 H 1.09003 * 109.47353 * 42.44759 * 4 3 2 30 30 H 1.09007 * 109.47482 * 193.96138 * 5 4 3 31 31 H 1.08996 * 109.47154 * 313.96185 * 5 4 3 32 32 H 1.08997 * 109.47474 * 73.95983 * 5 4 3 33 33 H 0.96997 * 120.00354 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46790 * 90.00665 * 19 18 17 35 35 H 1.09005 * 109.46839 * 210.00247 * 19 18 17 36 36 H 1.08999 * 109.47200 * 330.00321 * 19 18 17 37 37 H 1.09002 * 109.47137 * 270.20185 * 22 21 20 38 38 H 1.09000 * 109.46380 * 30.19631 * 22 21 20 39 39 H 1.08997 * 109.47272 * 150.19865 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4100 1.4517 -0.4693 5 6 3.7438 2.8894 -0.8724 6 6 1.8837 1.9914 1.3310 7 1 0.8876 1.7864 1.7236 8 6 2.0860 3.4811 1.2274 9 1 2.9317 3.9462 1.7120 10 6 1.1915 4.2504 0.5138 11 7 1.4223 5.5328 0.3363 12 14 -0.3484 3.4708 -0.2009 13 1 -1.4115 3.4346 0.8354 14 1 -0.8154 4.2712 -1.3612 15 1 -0.0424 2.0872 -0.6448 16 6 2.9188 1.4071 2.2575 17 16 4.6440 1.7645 2.2413 18 6 4.8867 0.6936 3.5519 19 6 6.2184 0.4074 4.1968 20 7 3.7648 0.1652 3.9082 21 6 2.6897 0.5297 3.2391 22 6 1.3149 -0.0020 3.5527 23 1 -0.3634 0.4654 -0.9162 24 1 -0.3635 -1.0262 0.0550 25 1 -0.3634 0.5607 0.8612 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 4.0791 1.1340 0.3304 29 1 3.5349 0.7948 -1.3301 30 1 4.6716 2.9004 -1.4445 31 1 2.9357 3.2924 -1.4829 32 1 3.8618 3.4998 0.0229 33 1 0.7929 6.0740 -0.1653 34 1 6.3859 1.1111 5.0122 35 1 6.2212 -0.6099 4.5885 36 1 7.0111 0.5138 3.4563 37 1 1.1334 -0.9057 2.9709 38 1 1.2492 -0.2349 4.6155 39 1 0.5678 0.7499 3.2986 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:59 Heat of formation + Delta-G solvation = 58.666740 kcal Electronic energy + Delta-G solvation = -19930.020881 eV Core-core repulsion = 17193.188142 eV Total energy + Delta-G solvation = -2736.832739 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53823 -37.57876 -32.83523 -32.49183 -31.39543 -29.69521 -28.75652 -27.05531 -25.98726 -22.47771 -22.07357 -21.57774 -20.31254 -17.78516 -17.57300 -16.59612 -15.59825 -14.79457 -14.56876 -14.38373 -13.97913 -13.38905 -13.10931 -12.99998 -12.90883 -12.53483 -12.31527 -12.22596 -11.89214 -11.68154 -11.60163 -11.33120 -11.04034 -10.93364 -10.69749 -10.56320 -10.28962 -10.15976 -9.98343 -9.57676 -9.23890 -8.94780 -8.44754 -8.33478 -7.94810 -7.17651 -6.07645 -4.10783 1.35961 2.02468 2.49744 3.33695 3.41732 3.52396 3.70864 4.57084 4.59211 4.77747 5.34500 5.36474 5.57802 5.58881 5.61574 5.75468 5.80186 5.84286 5.87892 5.95180 6.01661 6.05334 6.18006 6.21797 6.24825 6.36837 6.47068 6.48455 6.67895 6.72775 6.83835 6.86767 7.14332 7.47075 7.65383 7.97692 8.13195 8.34250 8.46061 8.86716 9.54583 11.00595 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020439 B = 0.009146 C = 0.008084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.630187 B = 3060.557440 C = 3462.951842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 N -0.514 5.514 4 C 0.051 3.949 5 C -0.134 4.134 6 C 0.247 3.753 7 H 0.062 0.938 8 C -0.511 4.511 9 H 0.076 0.924 10 C 0.097 3.903 11 N -0.890 5.890 12 Si 0.838 3.162 13 H -0.291 1.291 14 H -0.300 1.300 15 H -0.190 1.190 16 C -0.184 4.184 17 S 0.157 5.843 18 C -0.014 4.014 19 C -0.067 4.067 20 N -0.473 5.473 21 C 0.028 3.972 22 C -0.070 4.070 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -10.416 1.712 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 N -0.238 5.238 4 C -0.078 4.078 5 C -0.191 4.191 6 C 0.139 3.861 7 H 0.079 0.921 8 C -0.550 4.550 9 H 0.094 0.906 10 C -0.108 4.108 11 N -0.526 5.526 12 Si 0.665 3.335 13 H -0.218 1.218 14 H -0.227 1.227 15 H -0.112 1.112 16 C -0.307 4.307 17 S 0.413 5.587 18 C -0.292 4.292 19 C -0.127 4.127 20 N -0.189 5.189 21 C -0.104 4.104 22 C -0.130 4.130 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.648 -9.740 1.150 10.854 hybrid contribution -1.180 -0.864 0.398 1.515 sum 3.468 -10.604 1.547 11.263 Atomic orbital electron populations 1.22002 0.95947 0.99742 1.02595 1.22111 0.95773 0.91447 0.99536 1.63334 1.19488 1.14523 1.26424 1.22299 0.89232 0.98543 0.97732 1.21941 0.98313 0.95910 1.02984 1.18562 0.90898 0.95051 0.81551 0.92101 1.20690 1.12610 0.87407 1.34275 0.90585 1.24780 0.97990 0.94155 0.93918 1.69916 1.36643 1.06266 1.39771 0.87632 0.82116 0.84988 0.78813 1.21761 1.22728 1.11182 1.26903 0.98167 1.02040 1.03638 1.84105 1.04327 1.42430 1.27809 1.26957 0.98232 1.02511 1.01457 1.20253 0.89420 1.03010 1.00015 1.66034 0.97719 1.26206 1.28988 1.20024 0.95260 0.99609 0.95467 1.20282 0.90387 1.00576 1.01706 0.91565 0.93700 0.92804 0.95367 0.92439 0.94990 0.93383 0.95911 0.92385 0.89311 0.92658 0.90478 0.90383 0.90845 0.91704 0.91552 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.54 37.15 0.32 -2.02 16 2 C 0.04 0.69 5.61 -3.83 -0.02 0.67 16 3 N -0.51 -10.33 2.42 -229.44 -0.56 -10.89 16 4 C 0.05 0.98 5.22 -3.83 -0.02 0.96 16 5 C -0.13 -2.78 8.62 37.16 0.32 -2.46 16 6 C 0.25 5.36 1.28 -70.02 -0.09 5.27 16 7 H 0.06 1.36 3.80 -51.93 -0.20 1.16 16 8 C -0.51 -13.05 5.66 -34.44 -0.19 -13.24 16 9 H 0.08 2.14 7.07 -52.48 -0.37 1.77 16 10 C 0.10 2.59 5.00 -17.82 -0.09 2.51 16 11 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 12 Si 0.84 19.77 26.03 -169.99 -4.43 15.34 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 15 H -0.19 -4.01 2.29 56.52 0.13 -3.88 16 16 C -0.18 -3.75 3.96 -35.92 -0.14 -3.89 16 17 S 0.16 2.89 18.89 -107.50 -2.03 0.86 16 18 C -0.01 -0.25 7.39 -13.45 -0.10 -0.35 16 19 C -0.07 -0.83 10.46 36.01 0.38 -0.45 16 20 N -0.47 -9.02 10.53 -8.05 -0.08 -9.10 16 21 C 0.03 0.54 6.23 -84.22 -0.52 0.02 16 22 C -0.07 -1.15 9.67 36.01 0.35 -0.80 16 23 H 0.07 1.10 6.56 -51.93 -0.34 0.76 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.91 6.07 -51.93 -0.32 0.60 16 26 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16 27 H 0.06 0.92 7.62 -51.93 -0.40 0.53 16 28 H 0.03 0.62 3.87 -29.00 -0.11 0.51 16 29 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 32 H 0.09 2.07 5.22 -51.93 -0.27 1.80 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.24 6.61 -51.93 -0.34 0.89 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -28.96 299.15 -7.44 -36.40 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.81 Total: 1.58 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 0.18 Total: -13.80 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.13 Total: -44.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.43 Total: 15.34 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.03 Total: 0.86 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.96 -7.44 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.070 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds