Wall clock time and date at job start Mon Mar 30 2020 06:52:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 N 1.46901 * 109.47592 * 2 1
4 4 C 1.46893 * 111.00275 * 200.01218 * 3 2 1
5 5 C 1.53000 * 109.47095 * 162.44163 * 4 3 2
6 6 C 1.46897 * 110.99832 * 76.05685 * 3 2 1
7 7 H 1.09005 * 109.46995 * 313.09918 * 6 3 2
8 8 C 1.50697 * 109.47450 * 193.09538 * 6 3 2
9 9 H 1.08003 * 119.99785 * 244.99399 * 8 6 3
10 10 C 1.37878 * 120.00124 * 64.98688 * 8 6 3
11 11 N 1.31505 * 120.00199 * 185.23944 * 10 8 6
12 12 Si 1.86804 * 119.99641 * 5.23909 * 10 8 6
13 13 H 1.48503 * 109.47057 * 84.59092 * 12 10 8
14 14 H 1.48503 * 109.46712 * 204.58272 * 12 10 8
15 15 H 1.48493 * 109.47335 * 324.58654 * 12 10 8
16 16 C 1.50708 * 109.47180 * 73.09367 * 6 3 2
17 17 S 1.76193 * 126.03394 * 73.90675 * 16 6 3
18 18 C 1.70981 * 90.28077 * 180.02562 * 17 16 6
19 19 C 1.50704 * 124.91610 * 179.97438 * 18 17 16
20 20 N 1.29028 * 110.16795 * 0.02562 * 18 17 16
21 21 C 1.31779 * 117.12309 * 359.71401 * 20 18 17
22 22 C 1.50704 * 122.75473 * 180.33259 * 21 20 18
23 23 H 1.08999 * 109.47244 * 63.06899 * 1 2 3
24 24 H 1.09002 * 109.47813 * 183.06668 * 1 2 3
25 25 H 1.09003 * 109.47508 * 303.06854 * 1 2 3
26 26 H 1.09003 * 109.47136 * 120.00217 * 2 1 3
27 27 H 1.09003 * 109.47123 * 239.99876 * 2 1 3
28 28 H 1.08999 * 109.47168 * 282.44370 * 4 3 2
29 29 H 1.09003 * 109.47353 * 42.44759 * 4 3 2
30 30 H 1.09007 * 109.47482 * 193.96138 * 5 4 3
31 31 H 1.08996 * 109.47154 * 313.96185 * 5 4 3
32 32 H 1.08997 * 109.47474 * 73.95983 * 5 4 3
33 33 H 0.96997 * 120.00354 * 180.02562 * 11 10 8
34 34 H 1.09001 * 109.46790 * 90.00665 * 19 18 17
35 35 H 1.09005 * 109.46839 * 210.00247 * 19 18 17
36 36 H 1.08999 * 109.47200 * 330.00321 * 19 18 17
37 37 H 1.09002 * 109.47137 * 270.20185 * 22 21 20
38 38 H 1.09000 * 109.46380 * 30.19631 * 22 21 20
39 39 H 1.08997 * 109.47272 * 150.19865 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4100 1.4517 -0.4693
5 6 3.7438 2.8894 -0.8724
6 6 1.8837 1.9914 1.3310
7 1 0.8876 1.7864 1.7236
8 6 2.0860 3.4811 1.2274
9 1 2.9317 3.9462 1.7120
10 6 1.1915 4.2504 0.5138
11 7 1.4223 5.5328 0.3363
12 14 -0.3484 3.4708 -0.2009
13 1 -1.4115 3.4346 0.8354
14 1 -0.8154 4.2712 -1.3612
15 1 -0.0424 2.0872 -0.6448
16 6 2.9188 1.4071 2.2575
17 16 4.6440 1.7645 2.2413
18 6 4.8867 0.6936 3.5519
19 6 6.2184 0.4074 4.1968
20 7 3.7648 0.1652 3.9082
21 6 2.6897 0.5297 3.2391
22 6 1.3149 -0.0020 3.5527
23 1 -0.3634 0.4654 -0.9162
24 1 -0.3635 -1.0262 0.0550
25 1 -0.3634 0.5607 0.8612
26 1 1.8933 -0.5139 0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 4.0791 1.1340 0.3304
29 1 3.5349 0.7948 -1.3301
30 1 4.6716 2.9004 -1.4445
31 1 2.9357 3.2924 -1.4829
32 1 3.8618 3.4998 0.0229
33 1 0.7929 6.0740 -0.1653
34 1 6.3859 1.1111 5.0122
35 1 6.2212 -0.6099 4.5885
36 1 7.0111 0.5138 3.4563
37 1 1.1334 -0.9057 2.9709
38 1 1.2492 -0.2349 4.6155
39 1 0.5678 0.7499 3.2986
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259952084.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:52:59
Heat of formation + Delta-G solvation = 58.666740 kcal
Electronic energy + Delta-G solvation = -19930.020881 eV
Core-core repulsion = 17193.188142 eV
Total energy + Delta-G solvation = -2736.832739 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 268.130 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.53823 -37.57876 -32.83523 -32.49183 -31.39543 -29.69521 -28.75652 -27.05531
-25.98726 -22.47771 -22.07357 -21.57774 -20.31254 -17.78516 -17.57300 -16.59612
-15.59825 -14.79457 -14.56876 -14.38373 -13.97913 -13.38905 -13.10931 -12.99998
-12.90883 -12.53483 -12.31527 -12.22596 -11.89214 -11.68154 -11.60163 -11.33120
-11.04034 -10.93364 -10.69749 -10.56320 -10.28962 -10.15976 -9.98343 -9.57676
-9.23890 -8.94780 -8.44754 -8.33478 -7.94810 -7.17651 -6.07645 -4.10783
1.35961 2.02468 2.49744 3.33695 3.41732 3.52396 3.70864 4.57084
4.59211 4.77747 5.34500 5.36474 5.57802 5.58881 5.61574 5.75468
5.80186 5.84286 5.87892 5.95180 6.01661 6.05334 6.18006 6.21797
6.24825 6.36837 6.47068 6.48455 6.67895 6.72775 6.83835 6.86767
7.14332 7.47075 7.65383 7.97692 8.13195 8.34250 8.46061 8.86716
9.54583 11.00595
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.020439 B = 0.009146 C = 0.008084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1369.630187 B = 3060.557440 C = 3462.951842
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.040 3.960
3 N -0.514 5.514
4 C 0.051 3.949
5 C -0.134 4.134
6 C 0.247 3.753
7 H 0.062 0.938
8 C -0.511 4.511
9 H 0.076 0.924
10 C 0.097 3.903
11 N -0.890 5.890
12 Si 0.838 3.162
13 H -0.291 1.291
14 H -0.300 1.300
15 H -0.190 1.190
16 C -0.184 4.184
17 S 0.157 5.843
18 C -0.014 4.014
19 C -0.067 4.067
20 N -0.473 5.473
21 C 0.028 3.972
22 C -0.070 4.070
23 H 0.066 0.934
24 H 0.044 0.956
25 H 0.053 0.947
26 H 0.028 0.972
27 H 0.057 0.943
28 H 0.033 0.967
29 H 0.048 0.952
30 H 0.022 0.978
31 H 0.057 0.943
32 H 0.088 0.912
33 H 0.264 0.736
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.073 0.927
37 H 0.064 0.936
38 H 0.066 0.934
39 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.294 -10.416 1.712 11.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.089 4.089
3 N -0.238 5.238
4 C -0.078 4.078
5 C -0.191 4.191
6 C 0.139 3.861
7 H 0.079 0.921
8 C -0.550 4.550
9 H 0.094 0.906
10 C -0.108 4.108
11 N -0.526 5.526
12 Si 0.665 3.335
13 H -0.218 1.218
14 H -0.227 1.227
15 H -0.112 1.112
16 C -0.307 4.307
17 S 0.413 5.587
18 C -0.292 4.292
19 C -0.127 4.127
20 N -0.189 5.189
21 C -0.104 4.104
22 C -0.130 4.130
23 H 0.084 0.916
24 H 0.063 0.937
25 H 0.072 0.928
26 H 0.046 0.954
27 H 0.076 0.924
28 H 0.050 0.950
29 H 0.066 0.934
30 H 0.041 0.959
31 H 0.076 0.924
32 H 0.107 0.893
33 H 0.073 0.927
34 H 0.095 0.905
35 H 0.096 0.904
36 H 0.092 0.908
37 H 0.083 0.917
38 H 0.084 0.916
39 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 4.648 -9.740 1.150 10.854
hybrid contribution -1.180 -0.864 0.398 1.515
sum 3.468 -10.604 1.547 11.263
Atomic orbital electron populations
1.22002 0.95947 0.99742 1.02595 1.22111 0.95773 0.91447 0.99536
1.63334 1.19488 1.14523 1.26424 1.22299 0.89232 0.98543 0.97732
1.21941 0.98313 0.95910 1.02984 1.18562 0.90898 0.95051 0.81551
0.92101 1.20690 1.12610 0.87407 1.34275 0.90585 1.24780 0.97990
0.94155 0.93918 1.69916 1.36643 1.06266 1.39771 0.87632 0.82116
0.84988 0.78813 1.21761 1.22728 1.11182 1.26903 0.98167 1.02040
1.03638 1.84105 1.04327 1.42430 1.27809 1.26957 0.98232 1.02511
1.01457 1.20253 0.89420 1.03010 1.00015 1.66034 0.97719 1.26206
1.28988 1.20024 0.95260 0.99609 0.95467 1.20282 0.90387 1.00576
1.01706 0.91565 0.93700 0.92804 0.95367 0.92439 0.94990 0.93383
0.95911 0.92385 0.89311 0.92658 0.90478 0.90383 0.90845 0.91704
0.91552 0.90722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.34 8.54 37.15 0.32 -2.02 16
2 C 0.04 0.69 5.61 -3.83 -0.02 0.67 16
3 N -0.51 -10.33 2.42 -229.44 -0.56 -10.89 16
4 C 0.05 0.98 5.22 -3.83 -0.02 0.96 16
5 C -0.13 -2.78 8.62 37.16 0.32 -2.46 16
6 C 0.25 5.36 1.28 -70.02 -0.09 5.27 16
7 H 0.06 1.36 3.80 -51.93 -0.20 1.16 16
8 C -0.51 -13.05 5.66 -34.44 -0.19 -13.24 16
9 H 0.08 2.14 7.07 -52.48 -0.37 1.77 16
10 C 0.10 2.59 5.00 -17.82 -0.09 2.51 16
11 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16
12 Si 0.84 19.77 26.03 -169.99 -4.43 15.34 16
13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
14 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16
15 H -0.19 -4.01 2.29 56.52 0.13 -3.88 16
16 C -0.18 -3.75 3.96 -35.92 -0.14 -3.89 16
17 S 0.16 2.89 18.89 -107.50 -2.03 0.86 16
18 C -0.01 -0.25 7.39 -13.45 -0.10 -0.35 16
19 C -0.07 -0.83 10.46 36.01 0.38 -0.45 16
20 N -0.47 -9.02 10.53 -8.05 -0.08 -9.10 16
21 C 0.03 0.54 6.23 -84.22 -0.52 0.02 16
22 C -0.07 -1.15 9.67 36.01 0.35 -0.80 16
23 H 0.07 1.10 6.56 -51.93 -0.34 0.76 16
24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
25 H 0.05 0.91 6.07 -51.93 -0.32 0.60 16
26 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16
27 H 0.06 0.92 7.62 -51.93 -0.40 0.53 16
28 H 0.03 0.62 3.87 -29.00 -0.11 0.51 16
29 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16
30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16
32 H 0.09 2.07 5.22 -51.93 -0.27 1.80 16
33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16
38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
39 H 0.07 1.24 6.61 -51.93 -0.34 0.89 16
LS Contribution 299.15 15.07 4.51 4.51
Total: -1.00 -28.96 299.15 -7.44 -36.40
By element:
Atomic # 1 Polarization: 7.39 SS G_CDS: -5.81 Total: 1.58 kcal
Atomic # 6 Polarization: -13.98 SS G_CDS: 0.18 Total: -13.80 kcal
Atomic # 7 Polarization: -45.03 SS G_CDS: 0.13 Total: -44.89 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -4.43 Total: 15.34 kcal
Atomic # 16 Polarization: 2.89 SS G_CDS: -2.03 Total: 0.86 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -28.96 -7.44 -36.40 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259952084.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.070 kcal
(2) G-P(sol) polarization free energy of solvation -28.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds