Wall clock time and date at job start Mon Mar 30 2020 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 109.47592 * 2 1 4 4 C 1.46893 * 111.00275 * 200.01218 * 3 2 1 5 5 C 1.53000 * 109.47095 * 162.44163 * 4 3 2 6 6 C 1.46897 * 110.99832 * 76.05685 * 3 2 1 7 7 H 1.09005 * 109.46995 * 313.09918 * 6 3 2 8 8 C 1.50697 * 109.47450 * 193.09538 * 6 3 2 9 9 H 1.08003 * 119.99785 * 244.99399 * 8 6 3 10 10 C 1.37878 * 120.00124 * 64.98688 * 8 6 3 11 11 N 1.31505 * 120.00199 * 185.23944 * 10 8 6 12 12 Si 1.86804 * 119.99641 * 5.23909 * 10 8 6 13 13 H 1.48503 * 109.47057 * 84.59092 * 12 10 8 14 14 H 1.48503 * 109.46712 * 204.58272 * 12 10 8 15 15 H 1.48493 * 109.47335 * 324.58654 * 12 10 8 16 16 C 1.50708 * 109.47180 * 73.09367 * 6 3 2 17 17 S 1.76193 * 126.03394 * 73.90675 * 16 6 3 18 18 C 1.70981 * 90.28077 * 180.02562 * 17 16 6 19 19 C 1.50704 * 124.91610 * 179.97438 * 18 17 16 20 20 N 1.29028 * 110.16795 * 0.02562 * 18 17 16 21 21 C 1.31779 * 117.12309 * 359.71401 * 20 18 17 22 22 C 1.50704 * 122.75473 * 180.33259 * 21 20 18 23 23 H 1.08999 * 109.47244 * 63.06899 * 1 2 3 24 24 H 1.09002 * 109.47813 * 183.06668 * 1 2 3 25 25 H 1.09003 * 109.47508 * 303.06854 * 1 2 3 26 26 H 1.09003 * 109.47136 * 120.00217 * 2 1 3 27 27 H 1.09003 * 109.47123 * 239.99876 * 2 1 3 28 28 H 1.08999 * 109.47168 * 282.44370 * 4 3 2 29 29 H 1.09003 * 109.47353 * 42.44759 * 4 3 2 30 30 H 1.09007 * 109.47482 * 193.96138 * 5 4 3 31 31 H 1.08996 * 109.47154 * 313.96185 * 5 4 3 32 32 H 1.08997 * 109.47474 * 73.95983 * 5 4 3 33 33 H 0.96997 * 120.00354 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46790 * 90.00665 * 19 18 17 35 35 H 1.09005 * 109.46839 * 210.00247 * 19 18 17 36 36 H 1.08999 * 109.47200 * 330.00321 * 19 18 17 37 37 H 1.09002 * 109.47137 * 270.20185 * 22 21 20 38 38 H 1.09000 * 109.46380 * 30.19631 * 22 21 20 39 39 H 1.08997 * 109.47272 * 150.19865 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4100 1.4517 -0.4693 5 6 3.7438 2.8894 -0.8724 6 6 1.8837 1.9914 1.3310 7 1 0.8876 1.7864 1.7236 8 6 2.0860 3.4811 1.2274 9 1 2.9317 3.9462 1.7120 10 6 1.1915 4.2504 0.5138 11 7 1.4223 5.5328 0.3363 12 14 -0.3484 3.4708 -0.2009 13 1 -1.4115 3.4346 0.8354 14 1 -0.8154 4.2712 -1.3612 15 1 -0.0424 2.0872 -0.6448 16 6 2.9188 1.4071 2.2575 17 16 4.6440 1.7645 2.2413 18 6 4.8867 0.6936 3.5519 19 6 6.2184 0.4074 4.1968 20 7 3.7648 0.1652 3.9082 21 6 2.6897 0.5297 3.2391 22 6 1.3149 -0.0020 3.5527 23 1 -0.3634 0.4654 -0.9162 24 1 -0.3635 -1.0262 0.0550 25 1 -0.3634 0.5607 0.8612 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 4.0791 1.1340 0.3304 29 1 3.5349 0.7948 -1.3301 30 1 4.6716 2.9004 -1.4445 31 1 2.9357 3.2924 -1.4829 32 1 3.8618 3.4998 0.0229 33 1 0.7929 6.0740 -0.1653 34 1 6.3859 1.1111 5.0122 35 1 6.2212 -0.6099 4.5885 36 1 7.0111 0.5138 3.4563 37 1 1.1334 -0.9057 2.9709 38 1 1.2492 -0.2349 4.6155 39 1 0.5678 0.7499 3.2986 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259952084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:59 Heat of formation + Delta-G solvation = 40.337184 kcal Electronic energy + Delta-G solvation = -19930.815711 eV Core-core repulsion = 17193.188142 eV Total energy + Delta-G solvation = -2737.627568 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99370 -39.11402 -34.63239 -33.93555 -32.92766 -31.24934 -29.99931 -28.62512 -27.61947 -24.07222 -23.50040 -23.06909 -21.83281 -19.32959 -19.22439 -18.25737 -17.13148 -16.40596 -16.17199 -15.86934 -15.46601 -14.90844 -14.57599 -14.30925 -14.20353 -14.07039 -13.73311 -13.49146 -13.29972 -13.22245 -12.93412 -12.86872 -12.59130 -12.57461 -12.31066 -12.05467 -11.91496 -11.82381 -11.57038 -11.27673 -11.11705 -10.44648 -10.39092 -9.83740 -9.40492 -8.72259 -8.14817 -6.18412 -0.07598 0.60663 1.05981 1.48846 1.56816 1.81559 1.91222 2.61410 3.09246 3.30723 3.54745 4.12387 4.20680 4.33499 4.35417 4.41796 4.48473 4.60060 4.67047 4.68806 4.73005 4.75369 4.78526 4.87051 4.97049 5.02058 5.07153 5.11136 5.21264 5.22663 5.39350 5.40805 5.51884 5.63194 5.89685 6.19033 6.45380 6.66323 6.82899 6.91902 7.49101 8.96319 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020439 B = 0.009146 C = 0.008084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.630187 B = 3060.557440 C = 3462.951842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 N -0.528 5.528 4 C 0.052 3.948 5 C -0.125 4.125 6 C 0.259 3.741 7 H 0.058 0.942 8 C -0.494 4.494 9 H 0.038 0.962 10 C 0.047 3.953 11 N -0.941 5.941 12 Si 0.882 3.118 13 H -0.295 1.295 14 H -0.319 1.319 15 H -0.148 1.148 16 C -0.221 4.221 17 S 0.142 5.858 18 C 0.004 3.996 19 C -0.069 4.069 20 N -0.494 5.494 21 C 0.031 3.969 22 C -0.069 4.069 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.772 -13.635 1.918 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.252 5.252 4 C -0.077 4.077 5 C -0.182 4.182 6 C 0.151 3.849 7 H 0.076 0.924 8 C -0.532 4.532 9 H 0.057 0.943 10 C -0.152 4.152 11 N -0.580 5.580 12 Si 0.708 3.292 13 H -0.223 1.223 14 H -0.248 1.248 15 H -0.069 1.069 16 C -0.344 4.344 17 S 0.399 5.601 18 C -0.273 4.273 19 C -0.129 4.129 20 N -0.211 5.211 21 C -0.101 4.101 22 C -0.129 4.129 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.130 -12.990 1.359 14.032 hybrid contribution -1.161 0.094 0.449 1.248 sum 3.969 -12.896 1.808 13.614 Atomic orbital electron populations 1.22003 0.94919 1.01724 1.01693 1.22192 0.96565 0.89498 1.00471 1.63072 1.20205 1.16723 1.25180 1.22307 0.89043 0.97580 0.98777 1.21762 0.98550 0.96625 1.01286 1.18159 0.91321 0.92550 0.82882 0.92436 1.20807 1.10477 0.89823 1.32134 0.94338 1.25451 1.00722 0.94306 0.94761 1.70058 1.37884 1.07940 1.42165 0.87051 0.78720 0.86089 0.77317 1.22257 1.24771 1.06937 1.26704 0.98761 1.03984 1.04975 1.84106 1.03673 1.43207 1.29140 1.27803 0.99535 1.00130 0.99839 1.20506 0.87281 1.04229 1.00881 1.66164 0.98139 1.27235 1.29521 1.20453 0.96491 0.98693 0.94442 1.20351 0.88726 1.01015 1.02776 0.92052 0.90373 0.93960 0.95279 0.90529 0.94434 0.90935 0.93493 0.94949 0.92505 0.93287 0.88896 0.88924 0.88556 0.89842 0.90429 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.54 71.98 0.61 -3.55 16 2 C 0.04 1.27 5.61 86.30 0.48 1.75 16 3 N -0.53 -20.32 2.42 -879.82 -2.13 -22.45 16 4 C 0.05 1.90 5.22 86.30 0.45 2.35 16 5 C -0.12 -5.17 8.62 71.98 0.62 -4.55 16 6 C 0.26 11.12 1.28 43.42 0.06 11.18 16 7 H 0.06 2.51 3.80 -2.38 -0.01 2.50 16 8 C -0.49 -25.92 5.66 25.60 0.14 -25.77 16 9 H 0.04 2.28 7.07 -2.91 -0.02 2.26 16 10 C 0.05 2.61 5.00 84.66 0.42 3.03 16 11 N -0.94 -57.02 13.96 21.45 0.30 -56.73 16 12 Si 0.88 41.34 26.03 68.60 1.79 43.13 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 14 H -0.32 -15.91 7.11 99.48 0.71 -15.20 16 15 H -0.15 -5.96 2.29 99.48 0.23 -5.73 16 16 C -0.22 -8.81 3.96 24.64 0.10 -8.71 16 17 S 0.14 5.11 18.89 -56.49 -1.07 4.04 16 18 C 0.00 0.14 7.39 88.52 0.65 0.80 16 19 C -0.07 -1.47 10.46 71.24 0.75 -0.73 16 20 N -0.49 -17.70 10.53 -179.39 -1.89 -19.59 16 21 C 0.03 1.14 6.23 41.52 0.26 1.40 16 22 C -0.07 -2.13 9.67 71.24 0.69 -1.44 16 23 H 0.06 1.81 6.56 -2.39 -0.02 1.79 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.30 6.07 -2.39 -0.01 1.29 16 26 H 0.03 0.92 5.98 -2.39 -0.01 0.91 16 27 H 0.08 2.12 7.62 -2.39 -0.02 2.11 16 28 H 0.04 1.39 3.87 -16.97 -0.07 1.32 16 29 H 0.07 2.32 7.64 -2.39 -0.02 2.30 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.03 1.47 7.89 -2.39 -0.02 1.45 16 32 H 0.06 2.72 5.22 -2.39 -0.01 2.71 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.23 7.67 -2.39 -0.02 2.21 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.19 6.61 -2.39 -0.02 2.17 16 Total: -1.00 -64.75 299.15 2.75 -62.00 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.51 Total: 13.84 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.24 Total: -24.24 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -3.72 Total: -98.76 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.79 Total: 43.13 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.07 Total: 4.04 kcal Total: -64.75 2.75 -62.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.334 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds