Wall clock time and date at job start Mon Mar 30 2020 06:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47298 * 2 1 4 4 C 1.46902 * 111.00132 * 169.99943 * 3 2 1 5 5 C 1.53003 * 109.46721 * 287.46181 * 4 3 2 6 6 C 1.46903 * 110.99722 * 293.95031 * 3 2 1 7 7 H 1.09004 * 109.46804 * 57.07968 * 6 3 2 8 8 C 1.50693 * 109.47072 * 177.07791 * 6 3 2 9 9 H 1.08003 * 120.00132 * 120.00028 * 8 6 3 10 10 C 1.37879 * 120.00311 * 299.72729 * 8 6 3 11 11 N 1.31512 * 120.00043 * 180.27446 * 10 8 6 12 12 Si 1.86801 * 119.99837 * 0.27276 * 10 8 6 13 13 H 1.48497 * 109.47003 * 90.00059 * 12 10 8 14 14 H 1.48496 * 109.47312 * 210.00240 * 12 10 8 15 15 H 1.48506 * 109.46837 * 330.00303 * 12 10 8 16 16 C 1.50700 * 109.47143 * 297.08267 * 6 3 2 17 17 S 1.76201 * 126.03333 * 302.56643 * 16 6 3 18 18 C 1.70984 * 90.27982 * 179.97438 * 17 16 6 19 19 C 1.50700 * 124.91334 * 180.02562 * 18 17 16 20 20 N 1.29029 * 110.16613 * 0.34339 * 18 17 16 21 21 C 1.31778 * 117.12427 * 359.72962 * 20 18 17 22 22 C 1.50703 * 122.74783 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.47339 * 300.00421 * 1 2 3 24 24 H 1.09008 * 109.47051 * 60.00312 * 1 2 3 25 25 H 1.08998 * 109.47473 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47339 * 239.99578 * 2 1 3 27 27 H 1.09008 * 109.47051 * 119.99688 * 2 1 3 28 28 H 1.09005 * 109.46782 * 47.45946 * 4 3 2 29 29 H 1.08995 * 109.47027 * 167.46002 * 4 3 2 30 30 H 1.08996 * 109.46628 * 185.76900 * 5 4 3 31 31 H 1.09001 * 109.47075 * 305.76928 * 5 4 3 32 32 H 1.09000 * 109.47337 * 65.76994 * 5 4 3 33 33 H 0.97000 * 119.99812 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.47302 * 270.33518 * 19 18 17 35 35 H 1.09002 * 109.47071 * 30.33975 * 19 18 17 36 36 H 1.09007 * 109.46949 * 150.33361 * 19 18 17 37 37 H 1.09004 * 109.46564 * 269.99870 * 22 21 20 38 38 H 1.08997 * 109.46949 * 29.99656 * 22 21 20 39 39 H 1.08994 * 109.47134 * 150.00181 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4685 1.4311 0.2382 5 6 3.7555 1.0949 1.7029 6 6 1.6703 2.0669 -1.2534 7 1 0.5901 2.0338 -1.3961 8 6 2.1246 3.5022 -1.1879 9 1 2.8351 3.8772 -1.9097 10 6 1.6290 4.3383 -0.2100 11 7 2.0214 5.5924 -0.1562 12 14 0.4001 3.6898 1.0385 13 1 1.1277 3.1520 2.2160 14 1 -0.4950 4.7928 1.4712 15 1 -0.4094 2.6088 0.4207 16 6 2.3507 1.3766 -2.4074 17 16 4.0851 1.1228 -2.5864 18 6 3.8237 0.3317 -4.0795 19 6 4.9091 -0.2431 -4.9527 20 7 2.5631 0.3040 -4.3535 21 6 1.7459 0.8551 -3.4788 22 6 0.2517 0.8935 -3.6709 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9658 0.7053 -0.4054 29 1 3.8418 2.4305 0.0149 30 1 4.8182 1.2286 1.9049 31 1 3.1769 1.7565 2.3477 32 1 3.4757 0.0599 1.8997 33 1 1.6724 6.1806 0.5316 34 1 5.2564 0.5193 -5.6500 35 1 5.7409 -0.5716 -4.3296 36 1 4.5150 -1.0929 -5.5102 37 1 -0.0228 1.8034 -4.2045 38 1 -0.0628 0.0244 -4.2488 39 1 -0.2401 0.8804 -2.6982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:02 Heat of formation + Delta-G solvation = 41.827886 kcal Electronic energy + Delta-G solvation = -19773.478603 eV Core-core repulsion = 17035.915676 eV Total energy + Delta-G solvation = -2737.562926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48412 -37.64556 -32.98658 -32.41880 -31.31375 -30.08808 -28.83953 -26.82430 -25.88741 -22.53725 -22.37937 -21.90027 -20.24943 -17.71458 -17.32590 -16.71642 -15.11195 -14.89076 -14.68742 -14.48034 -14.02092 -13.66216 -13.38921 -13.06801 -12.93545 -12.71010 -12.30852 -12.17602 -11.84982 -11.80501 -11.63713 -11.47055 -11.18150 -10.99092 -10.76683 -10.70848 -10.48122 -10.39896 -9.94771 -9.70113 -9.33066 -8.94285 -8.59935 -8.45078 -7.92299 -7.42868 -6.11379 -4.21078 1.37383 2.01307 2.46930 3.37126 3.49395 3.53637 3.64694 4.53440 4.57554 4.72625 5.29518 5.36683 5.53541 5.58911 5.61730 5.71830 5.74062 5.76890 5.80403 5.93350 5.98230 6.04408 6.07376 6.09487 6.19780 6.22158 6.38475 6.40081 6.50513 6.65315 6.71615 6.80071 6.91445 7.02697 7.43893 7.87203 8.05315 8.35135 8.43748 8.85957 9.49316 10.96946 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.008499 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.346725 B = 3293.831696 C = 3294.845268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 N -0.525 5.525 4 C 0.043 3.957 5 C -0.142 4.142 6 C 0.242 3.758 7 H 0.072 0.928 8 C -0.518 4.518 9 H 0.075 0.925 10 C 0.088 3.912 11 N -0.891 5.891 12 Si 0.918 3.082 13 H -0.276 1.276 14 H -0.317 1.317 15 H -0.261 1.261 16 C -0.177 4.177 17 S 0.132 5.868 18 C -0.010 4.010 19 C -0.067 4.067 20 N -0.471 5.471 21 C 0.029 3.971 22 C -0.071 4.071 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 -11.478 -2.081 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 N -0.249 5.249 4 C -0.086 4.086 5 C -0.200 4.200 6 C 0.134 3.866 7 H 0.090 0.910 8 C -0.556 4.556 9 H 0.093 0.907 10 C -0.117 4.117 11 N -0.527 5.527 12 Si 0.749 3.251 13 H -0.202 1.202 14 H -0.246 1.246 15 H -0.186 1.186 16 C -0.300 4.300 17 S 0.387 5.613 18 C -0.287 4.287 19 C -0.127 4.127 20 N -0.187 5.187 21 C -0.102 4.102 22 C -0.130 4.130 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.680 -11.096 -1.539 11.518 hybrid contribution -1.021 -0.550 -0.154 1.170 sum 1.659 -11.646 -1.694 11.885 Atomic orbital electron populations 1.21913 0.95788 1.00299 1.02656 1.22078 0.95631 0.91237 0.99605 1.62694 1.13623 1.13001 1.35572 1.22192 0.88436 1.02956 0.94995 1.21768 1.00334 1.00526 0.97345 1.18747 0.95727 0.92894 0.79205 0.91034 1.20731 1.28456 0.90552 1.15891 0.90743 1.24951 0.95761 0.94051 0.96939 1.69937 1.43488 1.05314 1.33988 0.86182 0.80416 0.76672 0.81853 1.20158 1.24609 1.18568 1.27010 0.94355 1.04983 1.03633 1.84088 1.08251 1.52901 1.16027 1.26929 0.95423 1.05882 1.00504 1.20249 0.93787 1.00936 0.97697 1.66030 1.01958 1.19507 1.31209 1.19993 0.97438 1.01430 0.91318 1.20300 0.88123 1.02200 1.02393 0.92197 0.92351 0.93335 0.95623 0.91847 0.95248 0.88261 0.93096 0.92042 0.93913 0.92515 0.90481 0.90899 0.90358 0.91096 0.91783 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.14 37.16 0.34 -2.12 16 2 C 0.04 0.75 5.36 -3.82 -0.02 0.73 16 3 N -0.52 -10.75 2.01 -229.43 -0.46 -11.21 16 4 C 0.04 0.83 4.14 -3.82 -0.02 0.82 16 5 C -0.14 -2.40 9.87 37.16 0.37 -2.04 16 6 C 0.24 5.38 1.30 -70.02 -0.09 5.29 16 7 H 0.07 1.63 3.88 -51.93 -0.20 1.43 16 8 C -0.52 -13.68 7.51 -34.44 -0.26 -13.94 16 9 H 0.07 2.19 7.98 -52.48 -0.42 1.77 16 10 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 11 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 12 Si 0.92 22.22 26.00 -169.99 -4.42 17.80 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.32 -7.90 7.11 56.52 0.40 -7.50 16 15 H -0.26 -5.91 5.05 56.52 0.29 -5.62 16 16 C -0.18 -3.65 3.74 -35.92 -0.13 -3.78 16 17 S 0.13 2.42 19.48 -107.50 -2.09 0.32 16 18 C -0.01 -0.18 7.39 -13.46 -0.10 -0.27 16 19 C -0.07 -0.83 10.46 36.01 0.38 -0.45 16 20 N -0.47 -9.10 10.53 -8.05 -0.08 -9.18 16 21 C 0.03 0.57 6.74 -84.23 -0.57 0.00 16 22 C -0.07 -1.20 9.93 36.01 0.36 -0.85 16 23 H 0.06 1.03 7.40 -51.93 -0.38 0.64 16 24 H 0.06 1.00 4.66 -51.92 -0.24 0.76 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.47 6.99 -51.93 -0.36 0.10 16 27 H 0.06 1.03 6.54 -51.92 -0.34 0.69 16 28 H 0.03 0.55 5.29 -38.43 -0.20 0.34 16 29 H 0.10 2.23 6.57 -51.93 -0.34 1.89 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.65 6.84 -51.93 -0.36 0.29 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.20 4.89 -51.93 -0.25 0.95 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -29.72 306.77 -7.24 -36.96 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.74 Total: 0.40 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.16 Total: -14.28 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.23 Total: -45.83 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.42 Total: 17.80 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.09 Total: 0.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.72 -7.24 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.788 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds