Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47266 * 2 1 4 4 C 1.46896 * 111.00318 * 302.28049 * 3 2 1 5 5 C 1.53004 * 109.46701 * 297.08408 * 4 3 2 6 6 C 1.46904 * 110.99506 * 66.23412 * 3 2 1 7 7 H 1.09006 * 109.46920 * 165.80948 * 6 3 2 8 8 C 1.50704 * 109.46881 * 285.80598 * 6 3 2 9 9 H 1.07999 * 120.00342 * 4.80766 * 8 6 3 10 10 C 1.37875 * 119.99866 * 184.81029 * 8 6 3 11 11 N 1.31511 * 119.99984 * 206.11442 * 10 8 6 12 12 Si 1.86805 * 120.00198 * 26.10979 * 10 8 6 13 13 H 1.48498 * 109.47020 * 271.99338 * 12 10 8 14 14 H 1.48500 * 109.46999 * 31.98941 * 12 10 8 15 15 H 1.48495 * 109.47150 * 151.98871 * 12 10 8 16 16 C 1.52991 * 109.47349 * 45.80695 * 6 3 2 17 17 C 1.50707 * 109.47090 * 63.46755 * 16 6 3 18 18 C 1.33640 * 126.03786 * 89.71692 * 17 16 6 19 19 N 1.31784 * 114.49678 * 179.79157 * 18 17 16 20 20 C 1.29026 * 117.12391 * 0.51540 * 19 18 17 21 21 C 1.50702 * 124.91303 * 179.68387 * 20 19 18 22 22 S 1.70970 * 110.16680 * 359.71638 * 20 19 18 23 23 H 1.08999 * 109.47081 * 49.79156 * 1 2 3 24 24 H 1.09002 * 109.47130 * 169.79423 * 1 2 3 25 25 H 1.09004 * 109.46637 * 289.79434 * 1 2 3 26 26 H 1.09001 * 109.46907 * 240.00161 * 2 1 3 27 27 H 1.08994 * 109.47136 * 120.00563 * 2 1 3 28 28 H 1.09001 * 109.47277 * 57.07767 * 4 3 2 29 29 H 1.08990 * 109.47423 * 177.07910 * 4 3 2 30 30 H 1.09004 * 109.46754 * 185.51390 * 5 4 3 31 31 H 1.09001 * 109.47245 * 305.50929 * 5 4 3 32 32 H 1.08999 * 109.47242 * 65.51685 * 5 4 3 33 33 H 0.97003 * 119.99893 * 179.97438 * 11 10 8 34 34 H 1.09002 * 109.47209 * 183.46439 * 16 6 3 35 35 H 1.08993 * 109.47414 * 303.46603 * 16 6 3 36 36 H 1.08001 * 122.74707 * 359.97174 * 18 17 16 37 37 H 1.09005 * 109.46962 * 270.03994 * 21 20 19 38 38 H 1.09003 * 109.47157 * 30.03896 * 21 20 19 39 39 H 1.08999 * 109.47073 * 150.03833 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5047 2.1255 -1.1594 5 6 2.0268 1.4844 -2.4468 6 6 1.6741 2.0655 1.2552 7 1 2.2517 2.9859 1.3405 8 6 0.2031 2.3932 1.2603 9 1 -0.4283 2.0551 0.4520 10 6 -0.3365 3.1247 2.2970 11 7 -1.6090 2.9931 2.6020 12 14 0.7397 4.3027 3.2684 13 1 1.3834 3.5739 4.3908 14 1 1.7869 4.8650 2.3781 15 1 -0.0954 5.4054 3.8083 16 6 1.9966 1.1496 2.4375 17 6 3.4806 0.8907 2.4821 18 6 4.3873 1.6237 3.1352 19 7 5.6259 1.1876 3.0234 20 6 5.8157 0.1335 2.3039 21 6 7.1552 -0.5095 2.0525 22 16 4.3276 -0.4275 1.6763 23 1 -0.3633 0.6634 -0.7848 24 1 -0.3633 -1.0114 -0.1821 25 1 -0.3633 0.3480 0.9670 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.4151 2.0958 -1.1548 29 1 1.8402 3.1612 -1.1073 30 1 1.7261 2.0898 -3.3020 31 1 3.1145 1.4253 -2.4081 32 1 1.6117 0.4816 -2.5476 33 1 -1.9886 3.5075 3.3315 34 1 1.6835 1.6293 3.3648 35 1 1.4663 0.2046 2.3203 36 1 4.1260 2.4999 3.7101 37 1 7.6059 -0.0735 1.1609 38 1 7.8068 -0.3387 2.9095 39 1 7.0219 -1.5812 1.9054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260025449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = 56.823271 kcal Electronic energy + Delta-G solvation = -19448.140635 eV Core-core repulsion = 16711.227957 eV Total energy + Delta-G solvation = -2736.912678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27650 -38.22833 -33.48765 -32.43477 -30.96429 -30.10821 -28.44514 -26.76320 -25.06068 -23.24839 -22.59045 -21.09763 -18.94440 -18.47481 -17.56317 -17.05390 -15.63843 -14.79900 -14.63007 -14.50190 -14.25903 -13.47192 -13.26438 -13.06055 -12.62644 -12.46230 -12.41400 -12.27095 -11.96340 -11.86234 -11.49987 -11.34771 -11.00497 -10.91770 -10.65581 -10.62560 -10.42102 -10.20117 -9.92410 -9.57852 -9.32374 -9.12140 -8.62904 -8.42281 -8.14850 -7.14891 -6.30352 -4.16276 1.24793 1.85140 2.28668 3.18749 3.31543 3.31888 3.37826 4.30918 4.55224 4.94306 4.98825 5.31511 5.53432 5.61006 5.67056 5.72608 5.80600 5.86342 5.95088 5.95972 6.09198 6.12709 6.29932 6.36294 6.44400 6.46717 6.55881 6.64009 6.67863 6.71832 6.88465 7.02682 7.15044 7.36630 7.54154 8.06921 8.12517 8.20712 8.32517 8.83405 9.40495 10.79846 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.008656 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.828239 B = 3234.117781 C = 4233.920179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.054 3.946 3 N -0.527 5.527 4 C 0.056 3.944 5 C -0.147 4.147 6 C 0.191 3.809 7 H 0.039 0.961 8 C -0.564 4.564 9 H 0.097 0.903 10 C 0.090 3.910 11 N -0.870 5.870 12 Si 0.848 3.152 13 H -0.273 1.273 14 H -0.263 1.263 15 H -0.288 1.288 16 C -0.052 4.052 17 C -0.162 4.162 18 C -0.001 4.001 19 N -0.471 5.471 20 C 0.002 3.998 21 C -0.068 4.068 22 S 0.128 5.872 23 H 0.055 0.945 24 H 0.027 0.973 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.164 0.836 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -7.011 -3.452 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.074 4.074 3 N -0.250 5.250 4 C -0.072 4.072 5 C -0.205 4.205 6 C 0.083 3.917 7 H 0.057 0.943 8 C -0.601 4.601 9 H 0.114 0.886 10 C -0.116 4.116 11 N -0.505 5.505 12 Si 0.674 3.326 13 H -0.199 1.199 14 H -0.188 1.188 15 H -0.214 1.214 16 C -0.093 4.093 17 C -0.283 4.283 18 C -0.149 4.149 19 N -0.186 5.186 20 C -0.276 4.276 21 C -0.128 4.128 22 S 0.381 5.619 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.182 0.818 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.744 -7.549 -3.745 13.655 hybrid contribution -0.736 1.699 1.250 2.234 sum 10.008 -5.851 -2.495 11.858 Atomic orbital electron populations 1.22860 0.97568 0.99146 1.05605 1.22059 0.93808 0.91517 1.00042 1.62670 1.57593 1.01621 1.03138 1.21914 0.98958 0.97140 0.89207 1.21840 1.01218 1.00240 0.97190 1.19601 0.95525 0.92020 0.84601 0.94341 1.21825 0.92710 1.35978 1.09591 0.88570 1.24907 0.94502 0.96330 0.95862 1.70094 1.13769 1.38391 1.28220 0.87281 0.81847 0.82670 0.80805 1.19861 1.18781 1.21423 1.20995 0.84771 1.02045 1.01487 1.26343 1.02713 0.98177 1.01086 1.21493 0.86351 1.02626 1.04480 1.66168 1.23044 1.11900 1.17529 1.26820 1.00938 0.98338 1.01466 1.20278 0.90269 0.99223 1.03077 1.83731 0.99804 1.29187 1.49136 0.92668 0.95408 0.88194 0.92662 0.92075 0.92940 0.91942 0.93439 0.92788 0.93355 0.92501 0.90281 0.90312 0.81842 0.90365 0.90127 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 8.08 37.16 0.30 -3.38 16 2 C 0.05 0.97 4.67 -3.82 -0.02 0.95 16 3 N -0.53 -10.21 4.57 -228.04 -1.04 -11.25 16 4 C 0.06 1.04 4.78 -3.82 -0.02 1.02 16 5 C -0.15 -2.23 9.60 37.16 0.36 -1.88 16 6 C 0.19 4.17 1.57 -68.87 -0.11 4.06 16 7 H 0.04 0.92 6.57 -51.93 -0.34 0.58 16 8 C -0.56 -13.91 5.83 -34.44 -0.20 -14.12 16 9 H 0.10 2.51 4.15 -52.49 -0.22 2.29 16 10 C 0.09 2.35 5.17 -17.82 -0.09 2.26 16 11 N -0.87 -24.25 13.96 55.43 0.77 -23.48 16 12 Si 0.85 19.98 25.97 -169.99 -4.41 15.57 16 13 H -0.27 -6.24 6.85 56.52 0.39 -5.85 16 14 H -0.26 -6.20 6.85 56.52 0.39 -5.81 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.05 -1.07 4.45 -27.88 -0.12 -1.19 16 17 C -0.16 -3.03 5.47 -35.92 -0.20 -3.23 16 18 C 0.00 -0.01 11.25 -19.18 -0.22 -0.23 16 19 N -0.47 -8.59 10.54 -11.86 -0.13 -8.72 16 20 C 0.00 0.02 7.39 -13.46 -0.10 -0.08 16 21 C -0.07 -0.75 10.46 36.01 0.38 -0.38 16 22 S 0.13 2.01 21.15 -107.50 -2.27 -0.26 16 23 H 0.05 1.08 5.32 -51.93 -0.28 0.81 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.10 2.24 5.37 -51.93 -0.28 1.96 16 26 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 27 H 0.06 1.08 4.05 -51.93 -0.21 0.87 16 28 H 0.05 1.06 4.53 -51.93 -0.24 0.83 16 29 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.71 6.81 -51.93 -0.35 0.35 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.71 5.98 -51.93 -0.31 1.40 16 35 H 0.08 1.59 5.54 -51.93 -0.29 1.30 16 36 H 0.16 3.02 8.06 -52.49 -0.42 2.60 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -27.29 303.98 -7.94 -35.22 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.40 Total: 4.52 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.04 Total: -16.19 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.39 Total: -43.45 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.41 Total: 15.57 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.27 Total: -0.26 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.29 -7.94 -35.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.048 kcal (2) G-P(sol) polarization free energy of solvation -27.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds