Wall clock time and date at job start Mon Mar 30 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47266 * 2 1 4 4 C 1.46896 * 111.00318 * 302.28049 * 3 2 1 5 5 C 1.53004 * 109.46701 * 297.08408 * 4 3 2 6 6 C 1.46904 * 110.99506 * 66.23412 * 3 2 1 7 7 H 1.09006 * 109.46920 * 165.80948 * 6 3 2 8 8 C 1.50704 * 109.46881 * 285.80598 * 6 3 2 9 9 H 1.07999 * 120.00342 * 4.80766 * 8 6 3 10 10 C 1.37875 * 119.99866 * 184.81029 * 8 6 3 11 11 N 1.31511 * 119.99984 * 206.11442 * 10 8 6 12 12 Si 1.86805 * 120.00198 * 26.10979 * 10 8 6 13 13 H 1.48498 * 109.47020 * 271.99338 * 12 10 8 14 14 H 1.48500 * 109.46999 * 31.98941 * 12 10 8 15 15 H 1.48495 * 109.47150 * 151.98871 * 12 10 8 16 16 C 1.52991 * 109.47349 * 45.80695 * 6 3 2 17 17 C 1.50707 * 109.47090 * 63.46755 * 16 6 3 18 18 C 1.33640 * 126.03786 * 89.71692 * 17 16 6 19 19 N 1.31784 * 114.49678 * 179.79157 * 18 17 16 20 20 C 1.29026 * 117.12391 * 0.51540 * 19 18 17 21 21 C 1.50702 * 124.91303 * 179.68387 * 20 19 18 22 22 S 1.70970 * 110.16680 * 359.71638 * 20 19 18 23 23 H 1.08999 * 109.47081 * 49.79156 * 1 2 3 24 24 H 1.09002 * 109.47130 * 169.79423 * 1 2 3 25 25 H 1.09004 * 109.46637 * 289.79434 * 1 2 3 26 26 H 1.09001 * 109.46907 * 240.00161 * 2 1 3 27 27 H 1.08994 * 109.47136 * 120.00563 * 2 1 3 28 28 H 1.09001 * 109.47277 * 57.07767 * 4 3 2 29 29 H 1.08990 * 109.47423 * 177.07910 * 4 3 2 30 30 H 1.09004 * 109.46754 * 185.51390 * 5 4 3 31 31 H 1.09001 * 109.47245 * 305.50929 * 5 4 3 32 32 H 1.08999 * 109.47242 * 65.51685 * 5 4 3 33 33 H 0.97003 * 119.99893 * 179.97438 * 11 10 8 34 34 H 1.09002 * 109.47209 * 183.46439 * 16 6 3 35 35 H 1.08993 * 109.47414 * 303.46603 * 16 6 3 36 36 H 1.08001 * 122.74707 * 359.97174 * 18 17 16 37 37 H 1.09005 * 109.46962 * 270.03994 * 21 20 19 38 38 H 1.09003 * 109.47157 * 30.03896 * 21 20 19 39 39 H 1.08999 * 109.47073 * 150.03833 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5047 2.1255 -1.1594 5 6 2.0268 1.4844 -2.4468 6 6 1.6741 2.0655 1.2552 7 1 2.2517 2.9859 1.3405 8 6 0.2031 2.3932 1.2603 9 1 -0.4283 2.0551 0.4520 10 6 -0.3365 3.1247 2.2970 11 7 -1.6090 2.9931 2.6020 12 14 0.7397 4.3027 3.2684 13 1 1.3834 3.5739 4.3908 14 1 1.7869 4.8650 2.3781 15 1 -0.0954 5.4054 3.8083 16 6 1.9966 1.1496 2.4375 17 6 3.4806 0.8907 2.4821 18 6 4.3873 1.6237 3.1352 19 7 5.6259 1.1876 3.0234 20 6 5.8157 0.1335 2.3039 21 6 7.1552 -0.5095 2.0525 22 16 4.3276 -0.4275 1.6763 23 1 -0.3633 0.6634 -0.7848 24 1 -0.3633 -1.0114 -0.1821 25 1 -0.3633 0.3480 0.9670 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.4151 2.0958 -1.1548 29 1 1.8402 3.1612 -1.1073 30 1 1.7261 2.0898 -3.3020 31 1 3.1145 1.4253 -2.4081 32 1 1.6117 0.4816 -2.5476 33 1 -1.9886 3.5075 3.3315 34 1 1.6835 1.6293 3.3648 35 1 1.4663 0.2046 2.3203 36 1 4.1260 2.4999 3.7101 37 1 7.6059 -0.0735 1.1609 38 1 7.8068 -0.3387 2.9095 39 1 7.0219 -1.5812 1.9054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260025449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:55 Heat of formation + Delta-G solvation = 39.274749 kcal Electronic energy + Delta-G solvation = -19448.901596 eV Core-core repulsion = 16711.227957 eV Total energy + Delta-G solvation = -2737.673639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68224 -39.78368 -35.10065 -34.18189 -32.27624 -31.58840 -29.85172 -28.46893 -26.52883 -24.56997 -24.20286 -22.67841 -20.37882 -20.00260 -19.13993 -18.72187 -17.23085 -16.38653 -16.23308 -15.96721 -15.68233 -14.94472 -14.68152 -14.54720 -14.24333 -13.88079 -13.73697 -13.50895 -13.33737 -13.19517 -13.12157 -12.91049 -12.71533 -12.47514 -12.18290 -12.13670 -11.92369 -11.86003 -11.67069 -11.21228 -11.06263 -10.45204 -10.40392 -9.94618 -9.51901 -8.80524 -8.34213 -6.19637 -0.07620 0.55779 0.95250 1.27307 1.36160 1.43655 1.94227 2.32862 2.97122 3.36877 3.41355 4.13954 4.21515 4.26222 4.29654 4.38793 4.57607 4.64976 4.68509 4.75132 4.75361 4.81665 4.84929 4.89334 4.93979 5.01580 5.08707 5.22447 5.28815 5.32769 5.34556 5.41057 5.52107 5.58208 5.82182 6.28181 6.40127 6.58149 6.83987 6.88581 7.38903 8.79077 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.008656 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.828239 B = 3234.117781 C = 4233.920179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 N -0.523 5.523 4 C 0.054 3.946 5 C -0.135 4.135 6 C 0.197 3.803 7 H 0.019 0.981 8 C -0.548 4.548 9 H 0.078 0.922 10 C 0.046 3.954 11 N -0.914 5.914 12 Si 0.893 3.107 13 H -0.264 1.264 14 H -0.263 1.263 15 H -0.292 1.292 16 C -0.040 4.040 17 C -0.196 4.196 18 C -0.005 4.005 19 N -0.500 5.500 20 C 0.012 3.988 21 C -0.071 4.071 22 S 0.175 5.825 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.793 -8.799 -4.668 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.246 5.246 4 C -0.074 4.074 5 C -0.193 4.193 6 C 0.088 3.912 7 H 0.037 0.963 8 C -0.586 4.586 9 H 0.095 0.905 10 C -0.156 4.156 11 N -0.552 5.552 12 Si 0.719 3.281 13 H -0.189 1.189 14 H -0.188 1.188 15 H -0.219 1.219 16 C -0.080 4.080 17 C -0.317 4.317 18 C -0.155 4.155 19 N -0.216 5.216 20 C -0.265 4.265 21 C -0.131 4.131 22 S 0.429 5.571 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.379 -9.347 -4.972 17.061 hybrid contribution -1.468 2.156 1.536 3.027 sum 11.912 -7.191 -3.436 14.332 Atomic orbital electron populations 1.22666 0.98538 1.00046 1.02929 1.22126 0.92810 0.90661 1.01487 1.62679 1.57392 1.02285 1.02222 1.21947 0.97766 0.96956 0.90746 1.21734 1.01445 1.00632 0.95448 1.19412 0.92997 0.92086 0.86728 0.96309 1.22049 0.94105 1.34280 1.08167 0.90454 1.25431 0.95175 0.97745 0.97209 1.70181 1.15321 1.40059 1.29639 0.86542 0.80412 0.81045 0.80113 1.18872 1.18804 1.21865 1.20608 0.86510 1.01256 0.99668 1.26097 1.01701 1.00570 1.03352 1.21538 0.87055 1.02552 1.04310 1.66243 1.22481 1.13486 1.19419 1.27728 1.02729 0.96948 0.99086 1.20550 0.87765 1.00619 1.04183 1.83441 0.98854 1.26949 1.47811 0.93655 0.93078 0.92079 0.89918 0.91722 0.95075 0.93363 0.91719 0.92098 0.92427 0.92681 0.92301 0.90409 0.82576 0.88604 0.89267 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.88 8.08 71.98 0.58 -6.30 16 2 C 0.06 1.94 4.67 86.30 0.40 2.34 16 3 N -0.52 -19.78 4.57 -875.39 -4.00 -23.78 16 4 C 0.05 1.97 4.78 86.31 0.41 2.39 16 5 C -0.14 -3.73 9.60 71.98 0.69 -3.04 16 6 C 0.20 8.69 1.57 44.17 0.07 8.76 16 7 H 0.02 0.92 6.57 -2.38 -0.02 0.91 16 8 C -0.55 -27.91 5.83 25.60 0.15 -27.76 16 9 H 0.08 4.20 4.15 -2.91 -0.01 4.19 16 10 C 0.05 2.48 5.17 84.65 0.44 2.92 16 11 N -0.91 -52.97 13.96 21.45 0.30 -52.67 16 12 Si 0.89 42.45 25.97 68.60 1.78 44.23 16 13 H -0.26 -12.02 6.85 99.48 0.68 -11.34 16 14 H -0.26 -12.39 6.85 99.48 0.68 -11.71 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 16 C -0.04 -1.64 4.45 29.85 0.13 -1.51 16 17 C -0.20 -7.16 5.47 24.64 0.13 -7.03 16 18 C -0.01 -0.19 11.25 83.66 0.94 0.75 16 19 N -0.50 -17.36 10.54 -191.45 -2.02 -19.38 16 20 C 0.01 0.34 7.39 88.52 0.65 1.00 16 21 C -0.07 -1.26 10.46 71.24 0.75 -0.51 16 22 S 0.17 4.99 21.15 -56.49 -1.19 3.80 16 23 H 0.04 1.77 5.32 -2.39 -0.01 1.76 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 2.78 5.37 -2.38 -0.01 2.77 16 26 H 0.08 2.39 6.62 -2.39 -0.02 2.38 16 27 H 0.06 2.16 4.05 -2.39 -0.01 2.15 16 28 H 0.03 1.28 4.53 -2.39 -0.01 1.27 16 29 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.49 6.81 -2.39 -0.02 1.47 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.06 2.61 5.98 -2.39 -0.01 2.60 16 35 H 0.08 3.14 5.54 -2.39 -0.01 3.13 16 36 H 0.16 5.85 8.06 -2.91 -0.02 5.82 16 37 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -60.30 303.98 1.23 -59.07 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.01 Total: 16.71 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.35 Total: -27.99 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -5.72 Total: -95.82 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.78 Total: 44.23 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.19 Total: 3.80 kcal Total: -60.30 1.23 -59.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.348 kcal (2) G-P(sol) polarization free energy of solvation -60.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds