Wall clock time and date at job start Mon Mar 30 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47584 * 2 1 4 4 C 1.53005 * 109.47025 * 239.99939 * 2 1 3 5 5 C 1.50697 * 109.46919 * 60.00241 * 4 2 1 6 6 H 1.07996 * 120.00233 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99739 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00156 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46738 * 90.00463 * 9 7 5 11 11 H 1.48502 * 109.47302 * 210.00043 * 9 7 5 12 12 H 1.48496 * 109.46981 * 330.00479 * 9 7 5 13 13 C 1.52998 * 109.47376 * 120.00095 * 2 1 3 14 14 C 1.53008 * 109.46900 * 303.83818 * 13 2 1 15 15 H 1.09002 * 109.47034 * 310.49768 * 14 13 2 16 16 N 1.46903 * 109.47156 * 70.49470 * 14 13 2 17 17 C 1.53002 * 109.47252 * 190.49428 * 14 13 2 18 18 C 1.50696 * 109.47164 * 174.99694 * 17 14 13 19 19 C 1.33645 * 126.03247 * 89.71533 * 18 17 14 20 20 N 1.31784 * 114.49555 * 179.78942 * 19 18 17 21 21 C 1.29029 * 117.12569 * 0.51995 * 20 19 18 22 22 S 1.70972 * 110.16521 * 359.71833 * 21 20 19 23 23 H 1.09005 * 109.46931 * 84.21971 * 1 2 3 24 24 H 1.08994 * 109.47450 * 204.22118 * 1 2 3 25 25 H 1.08998 * 109.46885 * 324.22331 * 1 2 3 26 26 H 1.09003 * 109.46920 * 59.99579 * 3 2 1 27 27 H 1.08996 * 109.47446 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46696 * 300.00222 * 3 2 1 29 29 H 1.09007 * 109.46920 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47201 * 299.99803 * 4 2 1 31 31 H 0.96999 * 119.99493 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47450 * 63.83297 * 13 2 1 33 33 H 1.08998 * 109.47565 * 183.83733 * 13 2 1 34 34 H 1.00903 * 110.99947 * 274.76287 * 16 14 13 35 35 H 1.00905 * 110.99559 * 38.71523 * 16 14 13 36 36 H 1.08996 * 109.46823 * 295.00121 * 17 14 13 37 37 H 1.08998 * 109.46854 * 54.99787 * 17 14 13 38 38 H 1.07997 * 122.75498 * 359.97438 * 19 18 17 39 39 H 1.07996 * 124.91409 * 179.74975 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2255 1.4408 -5.6613 11 1 1.0838 -0.5807 -6.3615 12 1 -0.0605 1.0352 -4.9614 13 6 2.0400 -0.7213 1.2492 14 6 1.4527 -0.0579 2.4966 15 1 1.5987 1.0207 2.4374 16 7 0.0161 -0.3538 2.5782 17 6 2.1567 -0.6002 3.7421 18 6 1.6656 0.1403 4.9592 19 6 0.6195 -0.2004 5.7179 20 7 0.3940 0.6090 6.7331 21 6 1.1855 1.6192 6.8671 22 16 2.3645 1.6125 5.6290 23 1 -0.3633 0.1035 -1.0225 24 1 -0.3634 -0.9371 0.4216 25 1 -0.3633 0.8337 0.6008 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2493 31 1 2.8616 -1.8823 -4.7336 32 1 1.7339 -1.7668 1.2156 33 1 3.1278 -0.6621 1.2843 34 1 -0.5202 0.3044 2.0331 35 1 -0.1746 -1.3019 2.2904 36 1 1.9372 -1.6624 3.8499 37 1 3.2329 -0.4601 3.6412 38 1 0.0106 -1.0695 5.5172 39 1 1.1138 2.3612 7.6485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260093801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:19 Heat of formation + Delta-G solvation = 30.148791 kcal Electronic energy + Delta-G solvation = -18499.897323 eV Core-core repulsion = 15761.827953 eV Total energy + Delta-G solvation = -2738.069370 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63547 -38.47083 -34.79982 -32.42706 -31.24236 -28.78814 -27.16981 -26.47035 -26.29343 -24.33862 -23.01565 -20.60808 -20.00601 -18.22263 -17.69400 -16.60017 -16.07487 -15.28585 -14.71737 -14.44495 -14.30742 -13.87622 -13.73016 -13.40996 -13.20245 -12.76896 -12.28732 -12.19901 -12.11717 -11.92606 -11.24922 -11.06079 -10.90673 -10.82760 -10.75233 -10.49763 -10.24090 -10.18760 -9.82609 -9.64693 -9.28331 -9.20999 -8.96263 -8.82420 -8.37879 -8.11063 -6.02326 -4.03173 0.77146 1.38265 1.77476 2.93424 3.28719 3.35844 3.37962 4.36260 4.42903 4.72977 4.85302 5.19973 5.26219 5.33134 5.36697 5.45788 5.61725 5.70321 5.79019 5.91485 5.96113 6.01625 6.23250 6.27675 6.31634 6.39789 6.44763 6.59996 6.69679 7.07813 7.11083 7.20839 7.42456 7.63355 7.70857 7.73712 7.77220 7.97179 8.40558 9.02303 9.60085 11.09002 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.045195 B = 0.003670 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.390128 B = 7626.951616 C = 7672.257627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.129 4.129 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.138 4.138 14 C 0.096 3.904 15 H 0.078 0.922 16 N -0.850 5.850 17 C -0.037 4.037 18 C -0.178 4.178 19 C 0.039 3.961 20 N -0.470 5.470 21 C 0.002 3.998 22 S 0.096 5.904 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.349 0.651 35 H 0.338 0.662 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.174 0.826 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 4.315 17.514 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.186 4.186 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.177 4.177 14 C -0.017 4.017 15 H 0.096 0.904 16 N -0.385 5.385 17 C -0.078 4.078 18 C -0.299 4.299 19 C -0.111 4.111 20 N -0.184 5.184 21 C -0.295 4.295 22 S 0.347 5.653 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.191 0.809 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.464 4.954 18.351 19.014 hybrid contribution -0.703 -0.406 -2.128 2.278 sum -1.168 4.548 16.223 16.889 Atomic orbital electron populations 1.22264 0.96309 0.98677 1.02810 1.20584 0.94580 0.95371 0.95496 1.21848 1.00275 0.96357 1.00149 1.19124 0.96025 0.95001 0.90006 1.21238 1.31017 1.11977 0.90730 0.92363 1.25018 0.95343 0.95065 0.99078 1.69965 1.37132 1.23082 1.23379 0.86672 0.79242 0.79453 0.83110 1.20762 1.21320 1.19934 1.22446 1.00837 0.99540 0.94846 1.21453 0.88405 1.00044 0.91754 0.90391 1.59078 1.06263 1.08431 1.64748 1.20227 0.99249 0.98912 0.89392 1.25903 1.01193 0.99514 1.03263 1.21642 0.97147 1.01116 0.91181 1.66301 1.26993 1.03897 1.21162 1.28199 0.96733 1.01098 1.03509 1.84043 1.33360 1.24212 1.23715 0.90904 0.93858 0.94349 0.95000 0.93641 0.91869 0.96800 0.96829 0.93093 0.92158 0.92061 0.83304 0.84807 0.89794 0.90590 0.80906 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 6.95 37.16 0.26 -2.16 16 2 C -0.06 -1.10 0.56 -154.51 -0.09 -1.19 16 3 C -0.13 -2.30 7.85 37.16 0.29 -2.01 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.57 7.30 -34.44 -0.25 -13.82 16 6 H 0.06 1.50 5.94 -52.49 -0.31 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C -0.14 -2.09 3.81 -26.73 -0.10 -2.20 16 14 C 0.10 1.22 2.59 -67.71 -0.18 1.05 16 15 H 0.08 1.08 6.09 -51.93 -0.32 0.76 16 16 N -0.85 -10.39 8.04 -4.66 -0.04 -10.43 16 17 C -0.04 -0.42 5.42 -27.88 -0.15 -0.57 16 18 C -0.18 -2.08 5.61 -35.92 -0.20 -2.28 16 19 C 0.04 0.48 11.13 -19.18 -0.21 0.27 16 20 N -0.47 -6.07 10.54 -15.75 -0.17 -6.24 16 21 C 0.00 0.02 12.23 51.59 0.63 0.65 16 22 S 0.10 0.99 23.22 -107.50 -2.50 -1.51 16 23 H 0.07 1.44 6.24 -51.93 -0.32 1.12 16 24 H 0.04 0.66 6.23 -51.93 -0.32 0.34 16 25 H 0.04 0.57 5.87 -51.93 -0.30 0.26 16 26 H 0.03 0.49 6.30 -51.93 -0.33 0.16 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.23 6.62 -51.92 -0.34 0.89 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.35 4.42 5.57 -39.29 -0.22 4.20 16 35 H 0.34 4.01 7.44 -39.29 -0.29 3.72 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 38 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -29.29 316.27 -8.11 -37.41 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.69 Total: 5.49 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.21 Total: -20.07 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.53 Total: -42.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.29 -8.11 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.555 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds