Wall clock time and date at job start Mon Mar 30 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47584 * 2 1 4 4 C 1.53005 * 109.47025 * 239.99939 * 2 1 3 5 5 C 1.50697 * 109.46919 * 60.00241 * 4 2 1 6 6 H 1.07996 * 120.00233 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99739 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00156 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46738 * 90.00463 * 9 7 5 11 11 H 1.48502 * 109.47302 * 210.00043 * 9 7 5 12 12 H 1.48496 * 109.46981 * 330.00479 * 9 7 5 13 13 C 1.52998 * 109.47376 * 120.00095 * 2 1 3 14 14 C 1.53008 * 109.46900 * 303.83818 * 13 2 1 15 15 H 1.09002 * 109.47034 * 310.49768 * 14 13 2 16 16 N 1.46903 * 109.47156 * 70.49470 * 14 13 2 17 17 C 1.53002 * 109.47252 * 190.49428 * 14 13 2 18 18 C 1.50696 * 109.47164 * 174.99694 * 17 14 13 19 19 C 1.33645 * 126.03247 * 89.71533 * 18 17 14 20 20 N 1.31784 * 114.49555 * 179.78942 * 19 18 17 21 21 C 1.29029 * 117.12569 * 0.51995 * 20 19 18 22 22 S 1.70972 * 110.16521 * 359.71833 * 21 20 19 23 23 H 1.09005 * 109.46931 * 84.21971 * 1 2 3 24 24 H 1.08994 * 109.47450 * 204.22118 * 1 2 3 25 25 H 1.08998 * 109.46885 * 324.22331 * 1 2 3 26 26 H 1.09003 * 109.46920 * 59.99579 * 3 2 1 27 27 H 1.08996 * 109.47446 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46696 * 300.00222 * 3 2 1 29 29 H 1.09007 * 109.46920 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47201 * 299.99803 * 4 2 1 31 31 H 0.96999 * 119.99493 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47450 * 63.83297 * 13 2 1 33 33 H 1.08998 * 109.47565 * 183.83733 * 13 2 1 34 34 H 1.00903 * 110.99947 * 274.76287 * 16 14 13 35 35 H 1.00905 * 110.99559 * 38.71523 * 16 14 13 36 36 H 1.08996 * 109.46823 * 295.00121 * 17 14 13 37 37 H 1.08998 * 109.46854 * 54.99787 * 17 14 13 38 38 H 1.07997 * 122.75498 * 359.97438 * 19 18 17 39 39 H 1.07996 * 124.91409 * 179.74975 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2255 1.4408 -5.6613 11 1 1.0838 -0.5807 -6.3615 12 1 -0.0605 1.0352 -4.9614 13 6 2.0400 -0.7213 1.2492 14 6 1.4527 -0.0579 2.4966 15 1 1.5987 1.0207 2.4374 16 7 0.0161 -0.3538 2.5782 17 6 2.1567 -0.6002 3.7421 18 6 1.6656 0.1403 4.9592 19 6 0.6195 -0.2004 5.7179 20 7 0.3940 0.6090 6.7331 21 6 1.1855 1.6192 6.8671 22 16 2.3645 1.6125 5.6290 23 1 -0.3633 0.1035 -1.0225 24 1 -0.3634 -0.9371 0.4216 25 1 -0.3633 0.8337 0.6008 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2493 31 1 2.8616 -1.8823 -4.7336 32 1 1.7339 -1.7668 1.2156 33 1 3.1278 -0.6621 1.2843 34 1 -0.5202 0.3044 2.0331 35 1 -0.1746 -1.3019 2.2904 36 1 1.9372 -1.6624 3.8499 37 1 3.2329 -0.4601 3.6412 38 1 0.0106 -1.0695 5.5172 39 1 1.1138 2.3612 7.6485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260093801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:19 Heat of formation + Delta-G solvation = 11.962412 kcal Electronic energy + Delta-G solvation = -18500.685943 eV Core-core repulsion = 15761.827953 eV Total energy + Delta-G solvation = -2738.857990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54993 -39.74878 -36.18459 -34.29644 -32.31865 -29.92299 -28.98671 -27.72365 -27.54792 -25.52480 -24.65169 -21.75848 -20.86572 -19.57478 -18.71067 -18.38068 -17.42127 -16.56369 -16.17321 -15.57267 -15.36185 -15.09116 -14.81673 -14.75077 -14.58446 -14.08804 -13.91561 -13.55739 -13.26635 -13.13116 -12.88597 -12.62065 -12.50785 -12.27635 -12.09994 -12.00677 -11.83940 -11.60632 -11.41898 -10.90563 -10.81543 -10.52069 -10.48577 -10.08639 -9.68749 -9.20946 -8.15659 -6.22674 -0.05764 0.57682 0.94873 1.39201 1.39656 1.49821 2.05933 2.41888 3.18154 3.59032 3.74156 3.81688 4.09582 4.20678 4.28212 4.40216 4.50599 4.51143 4.60971 4.67311 4.88731 4.93118 4.94666 5.03026 5.09367 5.12962 5.22741 5.27982 5.40193 5.48473 5.52264 5.61411 5.64893 5.86672 5.92552 6.33018 6.40706 6.71416 6.90021 6.93144 7.44772 8.96165 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.045195 B = 0.003670 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.390128 B = 7626.951616 C = 7672.257627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.124 4.124 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.263 1.263 13 C -0.130 4.130 14 C 0.110 3.890 15 H 0.075 0.925 16 N -0.845 5.845 17 C -0.033 4.033 18 C -0.192 4.192 19 C 0.030 3.970 20 N -0.502 5.502 21 C 0.006 3.994 22 S 0.120 5.880 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.043 0.957 29 H -0.018 1.018 30 H -0.016 1.016 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.348 0.652 35 H 0.342 0.658 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.174 0.826 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 5.836 18.830 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 C -0.182 4.182 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.169 4.169 14 C -0.003 4.003 15 H 0.093 0.907 16 N -0.380 5.380 17 C -0.073 4.073 18 C -0.313 4.313 19 C -0.119 4.119 20 N -0.216 5.216 21 C -0.291 4.291 22 S 0.371 5.629 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.000 1.000 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.191 0.809 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.171 6.486 19.676 20.751 hybrid contribution -0.454 -0.868 -2.480 2.666 sum -1.625 5.619 17.197 18.164 Atomic orbital electron populations 1.22190 0.94927 1.00668 1.01544 1.20473 0.95664 0.95442 0.94109 1.21789 0.99884 0.95797 1.00687 1.19019 0.93893 0.94013 0.92667 1.21643 1.30201 1.11865 0.91613 0.91721 1.25898 0.95745 0.95869 1.02520 1.70105 1.38856 1.24876 1.24008 0.85622 0.79103 0.78258 0.79146 1.20196 1.21315 1.18712 1.22351 1.00666 0.99211 0.94680 1.21280 0.88588 0.99407 0.91028 0.90707 1.59092 1.05759 1.08636 1.64520 1.20142 0.99393 0.99205 0.88574 1.25906 1.01467 1.00418 1.03489 1.21731 0.97465 1.01331 0.91401 1.66335 1.28344 1.04998 1.21914 1.28764 0.95795 1.00722 1.03830 1.83964 1.32724 1.23025 1.23142 0.93949 0.92503 0.91522 0.91834 0.94288 0.93829 0.99992 0.99764 0.93187 0.92502 0.92473 0.83436 0.84405 0.89270 0.89953 0.80901 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 6.95 71.98 0.50 -3.93 16 2 C -0.06 -2.06 0.56 -52.18 -0.03 -2.09 16 3 C -0.12 -4.28 7.85 71.98 0.56 -3.72 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.52 -27.79 7.30 25.60 0.19 -27.60 16 6 H 0.06 3.34 5.94 -2.91 -0.02 3.33 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 C -0.13 -3.83 3.81 30.60 0.12 -3.72 16 14 C 0.11 2.56 2.59 44.92 0.12 2.68 16 15 H 0.07 1.84 6.09 -2.39 -0.01 1.82 16 16 N -0.85 -18.73 8.04 -168.66 -1.36 -20.08 16 17 C -0.03 -0.67 5.42 29.85 0.16 -0.51 16 18 C -0.19 -4.09 5.61 24.64 0.14 -3.95 16 19 C 0.03 0.70 11.13 83.66 0.93 1.63 16 20 N -0.50 -12.02 10.54 -203.75 -2.15 -14.17 16 21 C 0.01 0.11 12.23 130.65 1.60 1.71 16 22 S 0.12 2.17 23.22 -56.49 -1.31 0.85 16 23 H 0.04 1.64 6.24 -2.38 -0.01 1.63 16 24 H 0.06 1.67 6.23 -2.39 -0.01 1.66 16 25 H 0.07 1.80 5.87 -2.39 -0.01 1.78 16 26 H 0.06 1.78 6.30 -2.39 -0.02 1.76 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.65 6.62 -2.38 -0.02 1.64 16 29 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 30 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 33 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.35 7.83 5.57 -89.69 -0.50 7.33 16 35 H 0.34 7.40 7.44 -89.69 -0.67 6.73 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 38 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -63.98 316.27 2.26 -61.72 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.10 Total: 19.21 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.87 Total: -37.07 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -3.22 Total: -90.57 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.85 kcal Total: -63.98 2.26 -61.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.682 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds