Wall clock time and date at job start Mon Mar 30 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.53000 * 109.47345 * 120.00301 * 2 1 3 5 5 C 1.50700 * 109.47600 * 175.00026 * 4 2 1 6 6 N 1.29027 * 124.91685 * 89.97037 * 5 4 2 7 7 C 1.31779 * 117.12535 * 180.02562 * 6 5 4 8 8 C 1.33640 * 114.50004 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.03640 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47066 * 90.02577 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46807 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47371 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46838 * 120.00669 * 17 15 13 20 20 H 1.48505 * 109.46977 * 239.99980 * 17 15 13 21 21 S 1.70972 * 124.91490 * 270.29093 * 5 4 2 22 22 H 1.08995 * 109.47169 * 299.99852 * 1 2 3 23 23 H 1.09003 * 109.46962 * 59.99858 * 1 2 3 24 24 H 1.09001 * 109.46750 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47450 * 239.99844 * 2 1 3 26 26 H 1.09003 * 109.47246 * 299.99969 * 3 2 1 27 27 H 1.09002 * 109.46840 * 60.00340 * 3 2 1 28 28 H 1.08998 * 109.47116 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47223 * 54.99332 * 4 2 1 30 30 H 1.09011 * 109.46878 * 295.00442 * 4 2 1 31 31 H 1.07999 * 122.74763 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47558 * 330.02740 * 9 8 7 33 33 H 1.08998 * 109.47216 * 210.02402 * 9 8 7 34 34 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 35 35 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 36 36 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 37 37 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 38 38 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 39 39 H 0.97007 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1889 6 7 4.3649 0.0459 1.6593 7 6 5.6514 -0.2043 1.5221 8 6 5.9292 -1.3546 0.9011 9 6 7.3054 -1.8937 0.6073 10 7 7.7550 -2.7269 1.7306 11 6 9.0964 -3.2704 1.4791 12 6 9.5290 -4.1311 2.6677 13 6 10.9049 -4.6891 2.4094 14 1 11.4191 -4.4538 1.4893 15 6 11.5072 -5.5001 3.3478 16 7 10.8808 -5.7871 4.4679 17 14 13.2123 -6.1924 3.0273 18 1 13.6961 -5.7240 1.7037 19 1 14.1427 -5.7269 4.0870 20 1 13.1539 -7.6763 3.0367 21 16 4.4020 -2.1262 0.4804 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1584 2.1370 31 1 6.4185 0.4653 1.8822 32 1 7.9990 -1.0641 0.4700 33 1 7.2738 -2.4950 -0.3012 34 1 7.0946 -3.4660 1.9195 35 1 9.0776 -3.8812 0.5764 36 1 9.8020 -2.4501 1.3481 37 1 9.5477 -3.5207 3.5705 38 1 8.8233 -4.9514 2.7982 39 1 11.3044 -6.3580 5.1280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273078385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:35 Heat of formation + Delta-G solvation = -4.398408 kcal Electronic energy + Delta-G solvation = -17253.452761 eV Core-core repulsion = 14513.885313 eV Total energy + Delta-G solvation = -2739.567449 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78956 -37.88835 -37.10903 -35.15731 -32.88951 -30.95914 -29.10088 -27.98246 -26.56388 -25.17515 -23.98545 -22.51356 -21.29491 -20.34843 -18.89303 -18.51408 -17.13868 -16.47234 -16.13985 -15.97910 -15.82028 -15.41111 -15.12805 -14.75017 -14.37012 -14.23495 -13.99693 -13.77295 -13.25147 -13.06542 -12.93076 -12.82134 -12.69854 -12.42948 -12.26627 -12.04839 -11.93136 -11.80248 -11.60509 -11.46366 -11.29966 -10.59325 -10.56059 -10.25197 -9.74128 -9.36319 -8.21301 -6.32968 -0.27805 0.36461 0.77389 1.40425 1.41001 1.54285 1.84722 2.40124 3.12428 3.17018 3.39998 3.84817 3.90551 3.98496 4.04604 4.13911 4.41005 4.48466 4.55925 4.63065 4.67952 4.69642 4.82896 4.86798 4.89665 5.03086 5.04288 5.06982 5.24416 5.27843 5.42715 5.45382 5.46982 5.63994 5.75399 6.06582 6.20253 6.39647 6.77678 6.84671 7.36594 8.91153 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.058362 B = 0.002742 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.651900 B =10209.339939 C =10306.090118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.042 4.042 5 C 0.050 3.950 6 N -0.492 5.492 7 C 0.041 3.959 8 C -0.225 4.225 9 C 0.139 3.861 10 N -0.694 5.694 11 C 0.084 3.916 12 C 0.031 3.969 13 C -0.543 4.543 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.278 1.278 21 S 0.131 5.869 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.337 0.663 35 H 0.025 0.975 36 H 0.065 0.935 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 11.059 -11.547 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.082 4.082 5 C -0.227 4.227 6 N -0.206 5.206 7 C -0.110 4.110 8 C -0.346 4.346 9 C 0.008 3.992 10 N -0.325 5.325 11 C -0.044 4.044 12 C -0.007 4.007 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.203 1.203 21 S 0.386 5.614 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.196 0.804 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.012 0.988 38 H 0.009 0.991 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.597 11.059 -11.285 25.959 hybrid contribution 1.568 -0.534 0.085 1.659 sum -19.028 10.525 -11.199 24.460 Atomic orbital electron populations 1.21803 0.92791 1.02743 1.02646 1.21099 0.97158 0.96069 0.96309 1.21815 1.00359 0.96047 1.01938 1.20576 0.83338 1.03451 1.00865 1.27481 1.02098 0.93258 0.99899 1.66336 1.02523 1.30788 1.20986 1.21857 0.92548 0.96975 0.99606 1.25894 0.99291 1.00286 1.09173 1.20255 0.89360 0.97610 0.91938 1.60574 1.04218 1.26831 1.40855 1.21821 0.88729 0.96858 0.97030 1.18928 0.94865 0.93334 0.93555 1.21640 1.02558 1.29905 1.04006 0.91864 1.26007 1.02452 0.96739 0.94747 1.70121 1.39912 1.38020 1.09237 0.85347 0.78766 0.77976 0.78622 1.18403 1.20447 1.20349 1.83829 0.97375 1.24907 1.55260 0.92035 0.91742 0.91540 0.91164 0.92027 0.92512 0.94381 0.87882 0.88650 0.80407 0.88357 0.93406 0.84597 0.95695 0.91631 0.98830 0.99139 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.09 -1.15 2.91 -10.79 -0.03 -1.18 16 3 C -0.14 -2.28 8.99 71.98 0.65 -1.64 16 4 C -0.04 -0.64 5.27 29.85 0.16 -0.49 16 5 C 0.05 1.12 5.88 88.52 0.52 1.64 16 6 N -0.49 -13.08 9.78 -191.45 -1.87 -14.95 16 7 C 0.04 1.12 11.25 83.66 0.94 2.06 16 8 C -0.23 -5.95 6.11 24.64 0.15 -5.80 16 9 C 0.14 3.88 6.22 85.55 0.53 4.41 16 10 N -0.69 -24.70 6.49 -517.92 -3.36 -28.06 16 11 C 0.08 3.48 5.62 86.30 0.49 3.97 16 12 C 0.03 1.64 5.23 29.85 0.16 1.80 16 13 C -0.54 -30.97 9.11 25.60 0.23 -30.73 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 17 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 S 0.13 2.92 23.18 -56.49 -1.31 1.61 16 22 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.78 6.80 -2.39 -0.02 0.76 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.34 12.01 8.72 -89.69 -0.78 11.23 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -65.86 338.46 0.92 -64.95 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.23 Total: 13.49 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.92 Total: -26.25 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.95 Total: -100.12 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.31 Total: 1.61 kcal Total: -65.86 0.92 -64.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.548 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds