Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47213 * 2 1 4 4 C 1.46909 * 110.99984 * 194.42140 * 3 2 1 5 5 C 1.52997 * 109.47363 * 66.04121 * 4 3 2 6 6 C 1.50692 * 109.47118 * 180.02562 * 5 4 3 7 7 N 1.29030 * 124.91507 * 89.70068 * 6 5 4 8 8 C 1.31781 * 117.12222 * 180.26862 * 7 6 5 9 9 C 1.33636 * 114.50232 * 359.97438 * 8 7 6 10 10 S 1.70977 * 124.91714 * 269.99868 * 6 5 4 11 11 C 1.46901 * 111.00477 * 70.46294 * 3 2 1 12 12 H 1.08999 * 109.46561 * 313.82384 * 11 3 2 13 13 C 1.52997 * 109.46756 * 73.82376 * 11 3 2 14 14 C 1.52995 * 109.47268 * 193.82386 * 11 3 2 15 15 C 1.50709 * 109.47288 * 65.32382 * 14 11 3 16 16 H 1.07998 * 119.99519 * 3.38700 * 15 14 11 17 17 C 1.37874 * 120.00144 * 183.38217 * 15 14 11 18 18 N 1.31515 * 119.99903 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99845 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46889 * 90.00340 * 19 17 15 21 21 H 1.48496 * 109.46990 * 209.99835 * 19 17 15 22 22 H 1.48502 * 109.47251 * 329.99948 * 19 17 15 23 23 H 1.09004 * 109.47200 * 295.07918 * 1 2 3 24 24 H 1.09000 * 109.47154 * 55.07722 * 1 2 3 25 25 H 1.08995 * 109.47204 * 175.07870 * 1 2 3 26 26 H 1.08997 * 109.47205 * 239.99277 * 2 1 3 27 27 H 1.09003 * 109.47121 * 119.99365 * 2 1 3 28 28 H 1.08999 * 109.46876 * 306.04196 * 4 3 2 29 29 H 1.08999 * 109.46971 * 186.04348 * 4 3 2 30 30 H 1.09006 * 109.46762 * 60.00011 * 5 4 3 31 31 H 1.09006 * 109.46963 * 300.00671 * 5 4 3 32 32 H 1.08006 * 122.74471 * 180.02562 * 8 7 6 33 33 H 1.08001 * 126.03628 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46680 * 180.02562 * 13 11 3 35 35 H 1.08999 * 109.47302 * 299.99687 * 13 11 3 36 36 H 1.09000 * 109.47169 * 60.00290 * 13 11 3 37 37 H 1.08997 * 109.47071 * 185.32516 * 14 11 3 38 38 H 1.09001 * 109.47148 * 305.32923 * 14 11 3 39 39 H 0.96998 * 120.00003 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4475 1.4385 -0.3416 5 6 3.6431 0.9832 -1.7891 6 6 5.1078 1.0376 -2.1392 7 7 5.9426 0.0674 -1.9759 8 6 7.1930 0.2847 -2.3308 9 6 7.4258 1.5059 -2.8211 10 16 5.9054 2.3962 -2.8036 11 6 1.7628 2.0343 1.2924 12 1 0.7386 1.8299 1.6044 13 6 2.7341 1.4868 2.3401 14 6 1.9616 3.5448 1.1527 15 6 0.9193 4.1045 0.2191 16 1 0.1550 3.4582 -0.1866 17 6 0.9414 5.4415 -0.1169 18 7 0.0315 5.9299 -0.9313 19 14 2.2637 6.5590 0.5844 20 1 3.4384 6.5666 -0.3240 21 1 1.7288 7.9383 0.7133 22 1 2.6750 6.0607 1.9215 23 1 -0.3634 0.4356 0.9308 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 -1.0238 -0.0882 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 4.0054 0.7806 0.3248 29 1 3.8096 2.4605 -0.2301 30 1 3.0851 1.6412 -2.4554 31 1 3.2808 -0.0388 -1.9006 32 1 7.9661 -0.4632 -2.2340 33 1 8.3779 1.8811 -3.1663 34 1 2.5432 1.9682 3.2992 35 1 2.5925 0.4106 2.4397 36 1 3.7583 1.6912 2.0280 37 1 1.8640 4.0161 2.1307 38 1 2.9546 3.7449 0.7504 39 1 0.0472 6.8704 -1.1680 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299652824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = 44.099600 kcal Electronic energy + Delta-G solvation = -18758.855556 eV Core-core repulsion = 16021.391139 eV Total energy + Delta-G solvation = -2737.464417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65119 -38.33707 -33.56022 -32.64691 -31.53903 -29.73163 -28.05336 -27.43814 -24.69950 -23.20941 -22.58752 -21.28927 -19.79729 -18.46333 -17.93009 -16.56341 -15.74571 -15.43364 -14.99642 -14.64839 -14.22998 -14.03646 -13.81193 -13.44062 -12.78983 -12.66933 -12.42906 -12.18389 -11.75949 -11.74556 -11.62058 -11.42629 -11.31949 -11.02066 -10.96349 -10.66683 -10.29883 -9.91532 -9.68769 -9.56871 -9.53464 -9.34781 -9.01106 -8.83507 -8.40883 -7.53788 -5.90005 -3.83524 0.73941 1.42301 1.83360 2.84822 3.35562 3.43754 3.46208 4.10432 4.54673 4.56541 5.11840 5.20188 5.26685 5.40595 5.44354 5.46973 5.50195 5.66974 5.70139 5.81978 5.85492 5.91819 5.99398 6.06461 6.11549 6.30197 6.37165 6.39897 6.51770 6.54573 6.67686 6.86105 7.15148 7.32234 7.75469 7.77594 7.83986 7.96927 8.73047 9.22138 9.73398 11.23977 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.006847 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.801964 B = 4088.366223 C = 5245.432321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.066 3.934 5 C -0.046 4.046 6 C 0.065 3.935 7 N -0.483 5.483 8 C 0.037 3.963 9 C -0.276 4.276 10 S 0.135 5.865 11 C 0.095 3.905 12 H 0.080 0.920 13 C -0.187 4.187 14 C -0.006 4.006 15 C -0.487 4.487 16 H 0.079 0.921 17 C 0.063 3.937 18 N -0.907 5.907 19 Si 0.868 3.132 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.269 1.269 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 -10.908 -1.458 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.231 5.231 4 C -0.064 4.064 5 C -0.087 4.087 6 C -0.212 4.212 7 N -0.198 5.198 8 C -0.114 4.114 9 C -0.416 4.416 10 S 0.389 5.611 11 C -0.013 4.013 12 H 0.098 0.902 13 C -0.246 4.246 14 C -0.044 4.044 15 C -0.526 4.526 16 H 0.097 0.903 17 C -0.137 4.137 18 N -0.548 5.548 19 Si 0.696 3.304 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.194 1.194 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.623 -9.973 -1.982 14.705 hybrid contribution 2.064 -0.325 0.970 2.303 sum 12.687 -10.298 -1.012 16.371 Atomic orbital electron populations 1.21751 0.95042 1.00338 1.03110 1.22145 0.96264 0.90140 0.99798 1.62088 1.14499 1.14653 1.31822 1.21986 0.90033 1.01546 0.92813 1.20407 0.85149 1.04183 0.98953 1.27238 1.01488 0.91979 1.00538 1.66330 1.02195 1.31344 1.19902 1.21767 0.93378 0.96341 0.99944 1.27091 1.03086 0.98949 1.12449 1.84418 1.00440 1.18442 1.57750 1.21728 0.98011 0.96457 0.85114 0.90162 1.22561 1.00983 1.00171 1.00922 1.19679 0.97375 0.90268 0.97045 1.21024 1.12041 0.93876 1.25612 0.90300 1.24982 0.95531 0.98026 0.95124 1.69905 1.35070 1.13843 1.35966 0.86967 0.82824 0.80415 0.80166 1.20485 1.21649 1.19378 0.92718 0.91346 0.93405 0.91430 0.95602 0.94989 0.89936 0.88163 0.89016 0.81149 0.80911 0.92493 0.93678 0.92977 0.96581 0.97047 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.85 37.16 0.37 -1.79 16 2 C 0.04 0.68 5.47 -3.83 -0.02 0.66 16 3 N -0.51 -9.16 4.12 -226.65 -0.93 -10.10 16 4 C 0.07 1.10 3.76 -3.82 -0.01 1.09 16 5 C -0.05 -0.69 5.76 -27.89 -0.16 -0.85 16 6 C 0.07 0.96 6.64 -13.46 -0.09 0.87 16 7 N -0.48 -7.10 10.54 -11.86 -0.13 -7.22 16 8 C 0.04 0.45 11.35 -19.19 -0.22 0.23 16 9 C -0.28 -3.08 11.37 29.12 0.33 -2.75 16 10 S 0.14 1.80 23.18 -107.50 -2.49 -0.69 16 11 C 0.09 1.82 2.13 -67.72 -0.14 1.68 16 12 H 0.08 1.59 6.32 -51.93 -0.33 1.26 16 13 C -0.19 -3.06 8.40 37.16 0.31 -2.74 16 14 C -0.01 -0.14 3.50 -27.88 -0.10 -0.24 16 15 C -0.49 -13.46 9.40 -34.44 -0.32 -13.78 16 16 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 17 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 18 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 19 Si 0.87 21.66 27.40 -169.99 -4.66 17.00 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.27 -6.47 6.64 56.52 0.38 -6.09 16 23 H 0.05 0.85 6.67 -51.93 -0.35 0.50 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.94 5.97 -51.93 -0.31 0.63 16 27 H 0.03 0.38 6.50 -51.93 -0.34 0.04 16 28 H 0.03 0.52 6.83 -51.93 -0.35 0.17 16 29 H 0.08 1.53 6.20 -51.93 -0.32 1.21 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.29 6.30 -51.93 -0.33 0.96 16 32 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.67 6.68 -51.93 -0.35 0.32 16 36 H 0.05 0.84 6.53 -51.93 -0.34 0.50 16 37 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 38 H 0.01 0.27 5.57 -51.93 -0.29 -0.02 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -30.69 319.16 -8.59 -39.28 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.81 Total: -0.08 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.16 Total: -15.92 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.28 Total: -44.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.66 Total: 17.00 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.69 -8.59 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299652824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.381 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds