Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47213 * 2 1 4 4 C 1.46909 * 110.99984 * 194.42140 * 3 2 1 5 5 C 1.52997 * 109.47363 * 66.04121 * 4 3 2 6 6 C 1.50692 * 109.47118 * 180.02562 * 5 4 3 7 7 N 1.29030 * 124.91507 * 89.70068 * 6 5 4 8 8 C 1.31781 * 117.12222 * 180.26862 * 7 6 5 9 9 C 1.33636 * 114.50232 * 359.97438 * 8 7 6 10 10 S 1.70977 * 124.91714 * 269.99868 * 6 5 4 11 11 C 1.46901 * 111.00477 * 70.46294 * 3 2 1 12 12 H 1.08999 * 109.46561 * 313.82384 * 11 3 2 13 13 C 1.52997 * 109.46756 * 73.82376 * 11 3 2 14 14 C 1.52995 * 109.47268 * 193.82386 * 11 3 2 15 15 C 1.50709 * 109.47288 * 65.32382 * 14 11 3 16 16 H 1.07998 * 119.99519 * 3.38700 * 15 14 11 17 17 C 1.37874 * 120.00144 * 183.38217 * 15 14 11 18 18 N 1.31515 * 119.99903 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99845 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46889 * 90.00340 * 19 17 15 21 21 H 1.48496 * 109.46990 * 209.99835 * 19 17 15 22 22 H 1.48502 * 109.47251 * 329.99948 * 19 17 15 23 23 H 1.09004 * 109.47200 * 295.07918 * 1 2 3 24 24 H 1.09000 * 109.47154 * 55.07722 * 1 2 3 25 25 H 1.08995 * 109.47204 * 175.07870 * 1 2 3 26 26 H 1.08997 * 109.47205 * 239.99277 * 2 1 3 27 27 H 1.09003 * 109.47121 * 119.99365 * 2 1 3 28 28 H 1.08999 * 109.46876 * 306.04196 * 4 3 2 29 29 H 1.08999 * 109.46971 * 186.04348 * 4 3 2 30 30 H 1.09006 * 109.46762 * 60.00011 * 5 4 3 31 31 H 1.09006 * 109.46963 * 300.00671 * 5 4 3 32 32 H 1.08006 * 122.74471 * 180.02562 * 8 7 6 33 33 H 1.08001 * 126.03628 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46680 * 180.02562 * 13 11 3 35 35 H 1.08999 * 109.47302 * 299.99687 * 13 11 3 36 36 H 1.09000 * 109.47169 * 60.00290 * 13 11 3 37 37 H 1.08997 * 109.47071 * 185.32516 * 14 11 3 38 38 H 1.09001 * 109.47148 * 305.32923 * 14 11 3 39 39 H 0.96998 * 120.00003 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4475 1.4385 -0.3416 5 6 3.6431 0.9832 -1.7891 6 6 5.1078 1.0376 -2.1392 7 7 5.9426 0.0674 -1.9759 8 6 7.1930 0.2847 -2.3308 9 6 7.4258 1.5059 -2.8211 10 16 5.9054 2.3962 -2.8036 11 6 1.7628 2.0343 1.2924 12 1 0.7386 1.8299 1.6044 13 6 2.7341 1.4868 2.3401 14 6 1.9616 3.5448 1.1527 15 6 0.9193 4.1045 0.2191 16 1 0.1550 3.4582 -0.1866 17 6 0.9414 5.4415 -0.1169 18 7 0.0315 5.9299 -0.9313 19 14 2.2637 6.5590 0.5844 20 1 3.4384 6.5666 -0.3240 21 1 1.7288 7.9383 0.7133 22 1 2.6750 6.0607 1.9215 23 1 -0.3634 0.4356 0.9308 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 -1.0238 -0.0882 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 4.0054 0.7806 0.3248 29 1 3.8096 2.4605 -0.2301 30 1 3.0851 1.6412 -2.4554 31 1 3.2808 -0.0388 -1.9006 32 1 7.9661 -0.4632 -2.2340 33 1 8.3779 1.8811 -3.1663 34 1 2.5432 1.9682 3.2992 35 1 2.5925 0.4106 2.4397 36 1 3.7583 1.6912 2.0280 37 1 1.8640 4.0161 2.1307 38 1 2.9546 3.7449 0.7504 39 1 0.0472 6.8704 -1.1680 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299652824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = 24.455659 kcal Electronic energy + Delta-G solvation = -18759.707381 eV Core-core repulsion = 16021.391139 eV Total energy + Delta-G solvation = -2738.316243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68918 -39.70961 -35.24447 -34.17316 -33.16262 -30.90645 -29.75511 -28.70151 -25.85342 -24.91346 -23.79107 -22.88240 -20.81790 -19.91497 -18.97510 -18.72492 -16.94368 -16.83826 -16.29872 -15.89669 -15.80499 -15.32419 -15.10024 -14.61384 -14.55597 -14.01864 -13.84260 -13.72793 -13.44205 -13.14317 -12.94776 -12.67305 -12.51141 -12.41209 -12.36085 -12.21346 -11.87984 -11.65789 -11.33309 -11.27489 -11.03820 -10.63742 -10.61058 -10.36740 -9.83729 -8.89755 -8.13245 -6.10763 -0.25504 0.42857 0.85989 1.37767 1.39406 1.49590 1.86956 2.44339 2.93288 3.22004 3.41472 3.98631 4.06855 4.14326 4.22765 4.36697 4.39680 4.41237 4.49110 4.55054 4.58013 4.64781 4.73545 4.84293 4.95753 5.04462 5.07403 5.12211 5.17765 5.21108 5.28959 5.32844 5.49178 5.58305 5.79179 6.37911 6.44716 6.57382 6.76456 6.96701 7.49339 9.03978 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.006847 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.801964 B = 4088.366223 C = 5245.432321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.075 3.925 5 C -0.037 4.037 6 C 0.045 3.955 7 N -0.497 5.497 8 C 0.022 3.978 9 C -0.252 4.252 10 S 0.112 5.888 11 C 0.098 3.902 12 H 0.069 0.931 13 C -0.177 4.177 14 C -0.004 4.004 15 C -0.482 4.482 16 H 0.039 0.961 17 C 0.002 3.998 18 N -0.956 5.956 19 Si 0.933 3.067 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.251 1.251 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.202 0.798 33 H 0.208 0.792 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.094 -12.085 -0.624 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.055 4.055 5 C -0.078 4.078 6 C -0.232 4.232 7 N -0.212 5.212 8 C -0.128 4.128 9 C -0.391 4.391 10 S 0.365 5.635 11 C -0.010 4.010 12 H 0.087 0.913 13 C -0.235 4.235 14 C -0.041 4.041 15 C -0.520 4.520 16 H 0.058 0.942 17 C -0.193 4.193 18 N -0.599 5.599 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.174 1.174 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.219 0.781 33 H 0.225 0.775 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.278 -11.180 -1.133 17.395 hybrid contribution 1.229 -0.027 0.645 1.388 sum 14.507 -11.207 -0.488 18.338 Atomic orbital electron populations 1.21719 0.95151 1.01585 1.01355 1.22192 0.96094 0.88661 1.01089 1.62000 1.15569 1.16609 1.31457 1.21863 0.89193 1.00349 0.94045 1.20218 0.85918 1.04142 0.97528 1.27049 1.01300 0.92680 1.02183 1.66325 1.03312 1.31570 1.20004 1.22264 0.93062 0.97507 1.00017 1.27466 1.03034 0.97957 1.10670 1.84505 1.02299 1.18822 1.57885 1.21514 0.98470 0.94163 0.86891 0.91261 1.22420 0.99914 1.01261 0.99948 1.19622 0.95738 0.93195 0.95571 1.21242 1.11883 0.93422 1.25472 0.94221 1.25831 0.97933 0.99869 0.95704 1.70068 1.37466 1.14260 1.38093 0.85922 0.79957 0.78065 0.80290 1.19592 1.21621 1.17448 0.93808 0.93920 0.90426 0.90070 0.94137 0.94151 0.92214 0.89709 0.88165 0.78137 0.77530 0.91731 0.91767 0.92812 0.96490 0.96788 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.85 71.98 0.71 -3.43 16 2 C 0.05 1.37 5.47 86.30 0.47 1.84 16 3 N -0.53 -19.13 4.12 -870.99 -3.59 -22.72 16 4 C 0.07 2.47 3.76 86.30 0.32 2.79 16 5 C -0.04 -1.11 5.76 29.84 0.17 -0.94 16 6 C 0.05 1.29 6.64 88.52 0.59 1.88 16 7 N -0.50 -13.68 10.54 -191.45 -2.02 -15.70 16 8 C 0.02 0.46 11.35 83.66 0.95 1.41 16 9 C -0.25 -4.88 11.37 66.78 0.76 -4.12 16 10 S 0.11 2.85 23.18 -56.49 -1.31 1.54 16 11 C 0.10 3.72 2.13 44.91 0.10 3.81 16 12 H 0.07 2.76 6.32 -2.39 -0.02 2.74 16 13 C -0.18 -5.36 8.40 71.98 0.60 -4.76 16 14 C 0.00 -0.17 3.50 29.85 0.10 -0.07 16 15 C -0.48 -27.35 9.40 25.60 0.24 -27.11 16 16 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 17 C 0.00 0.09 5.47 84.65 0.46 0.55 16 18 N -0.96 -60.59 13.96 21.45 0.30 -60.29 16 19 Si 0.93 44.84 27.40 68.60 1.88 46.72 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 22 H -0.25 -11.22 6.64 99.48 0.66 -10.56 16 23 H 0.04 1.36 6.67 -2.38 -0.02 1.35 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.08 2.14 5.97 -2.39 -0.01 2.13 16 27 H 0.04 1.08 6.50 -2.39 -0.02 1.06 16 28 H 0.04 1.25 6.83 -2.39 -0.02 1.24 16 29 H 0.06 2.22 6.20 -2.39 -0.01 2.20 16 30 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.10 2.74 6.30 -2.38 -0.02 2.73 16 32 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.21 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.71 6.68 -2.39 -0.02 1.69 16 36 H 0.05 1.61 6.53 -2.39 -0.02 1.60 16 37 H 0.02 0.78 7.44 -2.39 -0.02 0.76 16 38 H 0.01 0.64 5.57 -2.39 -0.01 0.63 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -67.45 319.16 1.73 -65.72 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.99 Total: 12.86 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 5.48 Total: -28.13 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -5.31 Total: -98.71 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -67.45 1.73 -65.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299652824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.172 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds