Wall clock time and date at job start Mon Mar 30 2020 07:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29447 * 117.95956 * 2 1 4 4 C 1.50067 * 124.07513 * 179.48332 * 3 2 1 5 5 H 1.08997 * 109.36115 * 257.08658 * 4 3 2 6 6 C 1.53000 * 109.35816 * 137.35861 * 4 3 2 7 7 C 1.53041 * 110.13600 * 17.16734 * 4 3 2 8 8 C 1.53385 * 108.42812 * 310.53064 * 7 4 3 9 9 H 1.08997 * 109.82239 * 307.66506 * 8 7 4 10 10 C 1.53004 * 109.64413 * 187.13152 * 8 7 4 11 11 O 1.42905 * 109.46773 * 61.06150 * 10 8 7 12 12 Si 1.63101 * 113.99905 * 210.00100 * 11 10 8 13 13 C 1.86297 * 109.47197 * 59.99753 * 12 11 10 14 14 C 1.86302 * 109.47016 * 179.97438 * 12 11 10 15 15 C 1.86306 * 109.46968 * 299.99867 * 12 11 10 16 16 C 1.50703 * 109.47387 * 181.05802 * 10 8 7 17 17 N 1.27938 * 120.00197 * 130.00514 * 16 10 8 18 18 Si 1.86804 * 119.99826 * 310.00440 * 16 10 8 19 19 H 1.48501 * 109.47121 * 89.99833 * 18 16 10 20 20 H 1.48503 * 109.47198 * 209.99830 * 18 16 10 21 21 H 1.48504 * 109.47325 * 329.99873 * 18 16 10 22 22 C 1.50066 * 117.96466 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47414 * 270.02039 * 1 2 3 24 24 H 1.09000 * 109.47481 * 30.02448 * 1 2 3 25 25 H 1.09002 * 109.47403 * 150.02512 * 1 2 3 26 26 H 1.08002 * 117.96487 * 359.50451 * 3 2 1 27 27 H 1.08995 * 109.47206 * 60.00056 * 6 4 3 28 28 H 1.08998 * 109.47224 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.46727 * 300.00153 * 6 4 3 30 30 H 1.09007 * 109.63554 * 190.85739 * 7 4 3 31 31 H 1.09004 * 109.65846 * 70.22448 * 7 4 3 32 32 H 1.09000 * 109.47541 * 301.06043 * 10 8 7 33 33 H 1.09005 * 109.47355 * 60.00017 * 13 12 11 34 34 H 1.08997 * 109.47216 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47207 * 300.00013 * 13 12 11 36 36 H 1.08997 * 109.46933 * 59.99867 * 14 12 11 37 37 H 1.08997 * 109.46820 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47200 * 299.99966 * 14 12 11 39 39 H 1.08998 * 109.46973 * 59.99630 * 15 12 11 40 40 H 1.09001 * 109.46903 * 180.02562 * 15 12 11 41 41 H 1.08999 * 109.46903 * 299.99734 * 15 12 11 42 42 H 0.97000 * 120.00029 * 180.02562 * 17 16 10 43 43 H 1.09000 * 109.35214 * 76.94848 * 22 2 1 44 44 H 1.09002 * 109.35616 * 317.36919 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 0.0112 5 1 3.9328 1.5745 1.0150 6 6 4.0049 2.4090 -0.9682 7 6 4.2794 -0.0074 -0.4020 8 6 3.6702 -1.1471 0.4243 9 1 3.7163 -0.9001 1.4849 10 6 4.4432 -2.4415 0.1636 11 8 5.8054 -2.2710 0.5605 12 14 6.8639 -3.1649 -0.3001 13 6 6.7530 -2.6968 -2.0999 14 6 8.5923 -2.8467 0.3184 15 6 6.4557 -4.9719 -0.1021 16 6 3.8256 -3.5640 0.9571 17 7 3.5330 -4.6686 0.3818 18 14 3.4872 -3.3424 2.7808 19 1 2.1210 -2.7910 2.9674 20 1 3.5887 -4.6559 3.4663 21 1 4.4828 -2.4042 3.3587 22 6 2.2107 -1.3254 0.0006 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.5088 2.0379 -0.0082 27 1 3.5358 3.3462 -0.6688 28 1 5.0885 2.5264 -0.9618 29 1 3.6746 2.1417 -1.9720 30 1 5.3503 0.0540 -0.2080 31 1 4.1060 -0.1903 -1.4625 32 1 4.4016 -2.6819 -0.8988 33 1 6.9918 -1.6396 -2.2158 34 1 7.4601 -3.2946 -2.6750 35 1 5.7418 -2.8827 -2.4620 36 1 8.6574 -3.1202 1.3714 37 1 9.2996 -3.4444 -0.2564 38 1 8.8308 -1.7895 0.2022 39 1 5.4445 -5.1577 -0.4641 40 1 7.1634 -5.5693 -0.6768 41 1 6.5207 -5.2458 0.9510 42 1 3.1351 -5.3910 0.8925 43 1 2.1749 -1.7538 -1.0011 44 1 1.7118 -1.9990 0.6974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300010800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:02 Heat of formation + Delta-G solvation = -55.862277 kcal Electronic energy + Delta-G solvation = -20168.753395 eV Core-core repulsion = 17437.292486 eV Total energy + Delta-G solvation = -2731.460909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67395 -38.39360 -35.85982 -34.29319 -33.36290 -29.45864 -28.55606 -28.30718 -27.87431 -27.38123 -27.19521 -22.76243 -21.92595 -20.83688 -19.08142 -17.97960 -16.93514 -16.55428 -16.19630 -15.70353 -15.01863 -14.97737 -14.60521 -14.48253 -14.18877 -14.12233 -13.88707 -13.69491 -13.37422 -13.27134 -13.20196 -13.14624 -13.11043 -12.96599 -12.87417 -12.59122 -12.47531 -12.33251 -12.13432 -12.10741 -11.80816 -11.60293 -11.49022 -11.13336 -10.90626 -10.62630 -10.38806 -9.85742 -9.56842 0.60987 1.04055 1.38111 1.39913 1.49187 1.74117 1.89535 1.99513 2.14149 2.57150 3.34818 3.70700 3.79728 3.96104 4.22052 4.26300 4.30939 4.38398 4.53597 4.61358 4.70671 4.72868 4.78047 4.79761 4.80972 4.82724 4.84755 4.85851 4.86438 4.91245 4.95479 4.98276 5.04136 5.08757 5.14454 5.25782 5.32746 5.39145 5.46855 5.54835 5.63013 5.66915 5.72771 5.85749 6.16157 6.76329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.132 4.132 3 C -0.159 4.159 4 C -0.063 4.063 5 H 0.080 0.920 6 C -0.141 4.141 7 C -0.106 4.106 8 C -0.088 4.088 9 H 0.084 0.916 10 C 0.152 3.848 11 O -0.618 6.618 12 Si 1.289 2.711 13 C -0.512 4.512 14 C -0.478 4.478 15 C -0.529 4.529 16 C -0.029 4.029 17 N -0.616 5.616 18 Si 0.928 3.072 19 H -0.233 1.233 20 H -0.256 1.256 21 H -0.229 1.229 22 C -0.082 4.082 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.347 0.653 43 H 0.083 0.917 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 0.931 0.034 1.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.081 4.081 5 H 0.098 0.902 6 C -0.199 4.199 7 C -0.144 4.144 8 C -0.107 4.107 9 H 0.103 0.897 10 C 0.095 3.905 11 O -0.575 6.575 12 Si 1.424 2.576 13 C -0.614 4.614 14 C -0.583 4.583 15 C -0.630 4.630 16 C -0.278 4.278 17 N -0.232 5.232 18 Si 0.745 3.255 19 H -0.156 1.156 20 H -0.180 1.180 21 H -0.151 1.151 22 C -0.119 4.119 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.165 0.835 43 H 0.101 0.899 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.687 0.864 0.134 1.112 hybrid contribution -0.066 -0.711 0.257 0.759 sum -0.753 0.153 0.391 0.862 Atomic orbital electron populations 1.20963 0.92099 1.02703 1.02240 1.20933 0.96094 0.94742 1.01473 1.22076 0.96226 0.97222 1.02168 1.20042 0.92187 0.95767 1.00079 0.90230 1.21768 1.01596 0.97672 0.98823 1.21671 1.00681 0.92556 0.99445 1.21343 0.93809 0.93704 1.01817 0.89733 1.20692 0.80465 0.91873 0.97498 1.85405 1.21675 1.77183 1.73270 0.76651 0.60956 0.59537 0.60444 1.27011 1.04528 1.06037 1.23853 1.26431 1.19544 1.05627 1.06716 1.27353 1.06788 1.24878 1.03939 1.30873 0.94461 0.95206 1.07279 1.68091 1.08111 1.02755 1.44261 0.85685 0.83018 0.82184 0.74608 1.15630 1.18005 1.15141 1.20467 0.93598 0.95190 1.02665 0.91464 0.91756 0.91627 0.87840 0.92535 0.91941 0.92866 0.89872 0.91376 0.89243 0.90709 0.90809 0.91375 0.91146 0.90156 0.90622 0.89633 0.91297 0.92219 0.83450 0.89850 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 9.87 71.24 0.70 0.83 16 2 C -0.13 -0.06 5.84 -15.10 -0.09 -0.15 16 3 C -0.16 -0.09 8.61 27.03 0.23 0.14 16 4 C -0.06 0.04 2.97 -11.72 -0.03 0.00 16 5 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 6 C -0.14 0.22 9.14 71.98 0.66 0.88 16 7 C -0.11 0.11 4.54 30.74 0.14 0.25 16 8 C -0.09 0.04 1.53 -10.66 -0.02 0.03 16 9 H 0.08 -0.01 6.53 -2.39 -0.02 -0.02 16 10 C 0.15 -0.04 1.41 29.85 0.04 0.01 16 11 O -0.62 -0.09 7.34 -148.98 -1.09 -1.18 16 12 Si 1.29 -2.37 12.68 68.60 0.87 -1.50 16 13 C -0.51 0.66 8.56 113.37 0.97 1.63 16 14 C -0.48 0.48 8.65 113.37 0.98 1.46 16 15 C -0.53 -0.56 7.98 113.37 0.90 0.34 16 16 C -0.03 0.00 3.25 88.68 0.29 0.28 16 17 N -0.62 -0.23 11.40 24.11 0.27 0.05 16 18 Si 0.93 0.45 26.46 68.60 1.82 2.26 16 19 H -0.23 -0.03 7.11 99.48 0.71 0.67 16 20 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 21 H -0.23 -0.44 7.11 99.48 0.71 0.26 16 22 C -0.08 0.06 4.60 29.66 0.14 0.19 16 23 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.06 -0.09 7.89 -2.39 -0.02 -0.11 16 25 H 0.06 -0.12 8.08 -2.39 -0.02 -0.14 16 26 H 0.10 0.01 7.80 -2.91 -0.02 -0.01 16 27 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.08 -0.13 7.55 -2.38 -0.02 -0.15 16 31 H 0.07 -0.08 8.10 -2.38 -0.02 -0.10 16 32 H 0.09 -0.15 6.12 -2.39 -0.01 -0.17 16 33 H 0.07 -0.13 7.96 -2.38 -0.02 -0.15 16 34 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 35 H 0.07 -0.06 7.10 -2.39 -0.02 -0.08 16 36 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 37 H 0.08 -0.16 7.96 -2.39 -0.02 -0.18 16 38 H 0.07 -0.10 7.96 -2.39 -0.02 -0.11 16 39 H 0.08 0.21 5.48 -2.39 -0.01 0.19 16 40 H 0.07 0.04 7.96 -2.39 -0.02 0.03 16 41 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 42 H 0.35 -0.80 8.23 -92.71 -0.76 -1.57 16 43 H 0.08 -0.11 8.10 -2.39 -0.02 -0.13 16 44 H 0.07 -0.10 6.79 -2.39 -0.02 -0.12 16 Total: 0.00 -4.38 340.39 7.72 3.34 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: 0.93 Total: -2.19 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 4.92 Total: 5.90 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: 0.27 Total: 0.05 kcal Atomic # 8 Polarization: -0.09 SS G_CDS: -1.09 Total: -1.18 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.69 Total: 0.76 kcal Total: -4.38 7.72 3.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300010800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.204 kcal (2) G-P(sol) polarization free energy of solvation -4.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 3.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds