Wall clock time and date at job start Mon Mar 30 2020 07:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29441 * 117.96034 * 2 1 4 4 C 1.50071 * 124.07789 * 180.49337 * 3 2 1 5 5 H 1.08998 * 109.24930 * 222.73350 * 4 3 2 6 6 C 1.53000 * 109.35981 * 103.07609 * 4 3 2 7 7 C 1.53029 * 110.14268 * 342.86776 * 4 3 2 8 8 C 1.53387 * 108.43932 * 49.43988 * 7 4 3 9 9 H 1.09008 * 109.64544 * 52.45433 * 8 7 4 10 10 C 1.52994 * 109.64489 * 172.87712 * 8 7 4 11 11 O 1.42901 * 109.47461 * 179.97438 * 10 8 7 12 12 Si 1.63094 * 114.00523 * 210.00149 * 11 10 8 13 13 C 1.86303 * 109.47202 * 59.99927 * 12 11 10 14 14 C 1.86297 * 109.47319 * 180.02562 * 12 11 10 15 15 C 1.86306 * 109.47031 * 300.00125 * 12 11 10 16 16 C 1.50695 * 109.47307 * 299.99914 * 10 8 7 17 17 N 1.27946 * 120.00250 * 129.99914 * 16 10 8 18 18 Si 1.86798 * 119.99957 * 309.99872 * 16 10 8 19 19 H 1.48506 * 109.47297 * 59.99673 * 18 16 10 20 20 H 1.48503 * 109.47261 * 299.99854 * 18 16 10 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 10 22 22 C 1.50063 * 117.96550 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47406 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46981 * 120.00005 * 1 2 3 25 25 H 1.09003 * 109.47061 * 240.00026 * 1 2 3 26 26 H 1.08001 * 117.96354 * 0.51560 * 3 2 1 27 27 H 1.09000 * 109.46963 * 299.31042 * 6 4 3 28 28 H 1.08996 * 109.46801 * 59.31122 * 6 4 3 29 29 H 1.08996 * 109.46946 * 179.31620 * 6 4 3 30 30 H 1.08994 * 109.64199 * 289.74701 * 7 4 3 31 31 H 1.08999 * 109.81341 * 169.22392 * 7 4 3 32 32 H 1.09005 * 109.46870 * 59.99637 * 10 8 7 33 33 H 1.09004 * 109.46723 * 60.00317 * 13 12 11 34 34 H 1.08995 * 109.47010 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.46969 * 300.00648 * 13 12 11 36 36 H 1.09000 * 109.47267 * 60.00307 * 14 12 11 37 37 H 1.09008 * 109.47224 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47127 * 299.99576 * 14 12 11 39 39 H 1.09004 * 109.46722 * 60.00156 * 15 12 11 40 40 H 1.09000 * 109.47265 * 179.97438 * 15 12 11 41 41 H 1.08998 * 109.47184 * 300.00101 * 15 12 11 42 42 H 0.97001 * 119.99665 * 359.97438 * 17 16 10 43 43 H 1.08995 * 109.35775 * 42.63314 * 22 2 1 44 44 H 1.09003 * 109.35800 * 283.05060 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3033 -0.0107 5 1 3.8881 2.0903 0.6886 6 6 4.0648 1.6877 -1.4188 7 6 4.2795 -0.0074 0.4021 8 6 3.6703 -1.1471 -0.4242 9 1 3.7196 -0.8981 -1.4843 10 6 4.4433 -2.4414 -0.1635 11 8 3.8725 -3.5007 -0.9344 12 14 4.0208 -4.9737 -0.2501 13 6 3.1676 -4.9778 1.4060 14 6 3.2389 -6.2534 -1.3554 15 6 5.8260 -5.3725 -0.0197 16 6 5.8855 -2.2533 -0.5578 17 7 6.8186 -2.5782 0.2551 18 14 6.3110 -1.5459 -2.2334 19 1 5.7242 -0.1877 -2.3609 20 1 5.7603 -2.4248 -3.2962 21 1 7.7869 -1.4622 -2.3752 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3634 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8899 25 1 -0.3633 -0.5138 0.8900 26 1 1.5088 2.0379 0.0086 27 1 3.7880 0.8995 -2.1189 28 1 3.5861 2.6211 -1.7146 29 1 5.1471 1.8162 -1.4257 30 1 4.1061 -0.1903 1.4625 31 1 5.3509 0.0516 0.2110 32 1 4.3859 -2.6918 0.8959 33 1 2.1114 -4.7445 1.2712 34 1 3.2670 -5.9621 1.8635 35 1 3.6254 -4.2291 2.0524 36 1 3.7385 -6.2510 -2.3241 37 1 3.3384 -7.2380 -0.8982 38 1 2.1828 -6.0203 -1.4905 39 1 6.2838 -4.6238 0.6268 40 1 5.9251 -6.3568 0.4381 41 1 6.3252 -5.3701 -0.9886 42 1 6.5976 -2.9452 1.1254 43 1 1.7119 -1.9990 -0.6974 44 1 2.1750 -1.7539 1.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300010802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:08 Heat of formation + Delta-G solvation = -68.188126 kcal Electronic energy + Delta-G solvation = -20363.573519 eV Core-core repulsion = 17631.578121 eV Total energy + Delta-G solvation = -2731.995398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93001 -38.59288 -35.82187 -34.40618 -33.09623 -29.65122 -28.65411 -28.47074 -27.98113 -27.65926 -26.95153 -22.88191 -22.44577 -21.35232 -18.73978 -17.93358 -17.22830 -16.70263 -15.92149 -15.77016 -15.22027 -14.87867 -14.62639 -14.41655 -14.29279 -14.09920 -13.94378 -13.78218 -13.64518 -13.41354 -13.34955 -13.34305 -13.19933 -12.95160 -12.88899 -12.68215 -12.48632 -12.37132 -12.35347 -11.98663 -11.79802 -11.48898 -11.43740 -11.23189 -11.03879 -10.77719 -10.68296 -9.91283 -9.63543 0.67556 1.23580 1.37496 1.40900 1.68605 1.76997 1.88149 1.93024 2.02807 2.37453 3.47552 3.56362 3.71682 3.80526 4.03134 4.15878 4.22677 4.36236 4.43013 4.53295 4.55151 4.58034 4.60558 4.62679 4.65606 4.67139 4.68059 4.70270 4.77271 4.79554 4.84028 4.84293 4.96204 5.05247 5.07709 5.15577 5.18662 5.28065 5.33980 5.39580 5.47441 5.50022 5.54823 5.79841 6.15206 6.76317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C -0.156 4.156 4 C -0.057 4.057 5 H 0.079 0.921 6 C -0.148 4.148 7 C -0.117 4.117 8 C -0.088 4.088 9 H 0.094 0.906 10 C 0.102 3.898 11 O -0.607 6.607 12 Si 1.248 2.752 13 C -0.509 4.509 14 C -0.465 4.465 15 C -0.514 4.514 16 C -0.051 4.051 17 N -0.609 5.609 18 Si 1.045 2.955 19 H -0.233 1.233 20 H -0.240 1.240 21 H -0.250 1.250 22 C -0.074 4.074 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.323 0.677 43 H 0.083 0.917 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 0.562 0.002 1.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.122 4.122 3 C -0.174 4.174 4 C -0.076 4.076 5 H 0.097 0.903 6 C -0.205 4.205 7 C -0.155 4.155 8 C -0.107 4.107 9 H 0.112 0.888 10 C 0.042 3.958 11 O -0.565 6.565 12 Si 1.385 2.615 13 C -0.610 4.610 14 C -0.571 4.571 15 C -0.616 4.616 16 C -0.297 4.297 17 N -0.224 5.224 18 Si 0.858 3.142 19 H -0.156 1.156 20 H -0.163 1.163 21 H -0.173 1.173 22 C -0.111 4.111 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.102 0.898 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.514 1.072 -0.985 1.544 hybrid contribution -1.021 -1.028 1.742 2.266 sum -1.534 0.044 0.757 1.711 Atomic orbital electron populations 1.20970 0.92462 1.02368 1.02122 1.20873 0.95732 0.94816 1.00782 1.21922 0.95605 0.97183 1.02649 1.19956 0.92525 0.97175 0.97905 0.90255 1.21953 1.01072 1.01671 0.95811 1.21760 0.99863 0.94042 0.99809 1.21394 0.94968 0.92218 1.02113 0.88809 1.21946 0.91651 0.88619 0.93545 1.85421 1.78281 1.32884 1.59899 0.77348 0.65454 0.56113 0.62624 1.26983 1.09056 1.04523 1.20487 1.26267 1.07992 1.12050 1.10794 1.27260 1.23401 1.05822 1.05150 1.32289 0.92430 0.95835 1.09155 1.69557 1.38336 1.07150 1.07396 0.83903 0.80499 0.80132 0.69624 1.15585 1.16278 1.17318 1.20336 0.93721 0.95057 1.02011 0.92120 0.91586 0.91825 0.87888 0.92122 0.92426 0.92224 0.91400 0.91120 0.91703 0.90748 0.90707 0.91710 0.90630 0.90528 0.90666 0.91518 0.90813 0.90708 0.85749 0.89805 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.08 9.98 36.00 0.36 0.44 16 2 C -0.12 -0.01 5.84 -100.94 -0.59 -0.60 16 3 C -0.16 -0.01 8.64 -35.90 -0.31 -0.32 16 4 C -0.06 0.03 3.12 -92.06 -0.29 -0.26 16 5 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 6 C -0.15 0.09 8.25 37.16 0.31 0.39 16 7 C -0.12 0.08 4.51 -26.52 -0.12 -0.03 16 8 C -0.09 0.04 1.49 -90.41 -0.13 -0.09 16 9 H 0.09 -0.03 4.80 -51.92 -0.25 -0.28 16 10 C 0.10 -0.05 1.38 -27.89 -0.04 -0.09 16 11 O -0.61 0.12 7.64 -35.23 -0.27 -0.15 16 12 Si 1.25 -1.74 12.68 -169.99 -2.16 -3.89 16 13 C -0.51 0.57 8.56 101.05 0.87 1.44 16 14 C -0.46 0.39 8.65 101.05 0.87 1.26 16 15 C -0.51 0.08 7.98 101.05 0.81 0.89 16 16 C -0.05 -0.02 2.97 -13.90 -0.04 -0.06 16 17 N -0.61 -0.61 11.99 56.23 0.67 0.07 16 18 Si 1.05 0.29 27.10 -169.99 -4.61 -4.32 16 19 H -0.23 0.24 5.57 56.52 0.31 0.55 16 20 H -0.24 -0.13 7.11 56.52 0.40 0.28 16 21 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 22 C -0.07 0.03 4.86 -28.18 -0.14 -0.11 16 23 H 0.06 -0.05 7.56 -51.93 -0.39 -0.44 16 24 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.10 -0.02 7.56 -52.49 -0.40 -0.42 16 27 H 0.06 -0.02 6.14 -51.93 -0.32 -0.34 16 28 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.06 -0.05 7.88 -51.93 -0.41 -0.46 16 30 H 0.07 -0.06 8.12 -51.93 -0.42 -0.48 16 31 H 0.07 -0.07 6.43 -51.93 -0.33 -0.40 16 32 H 0.07 -0.11 5.87 -51.93 -0.31 -0.42 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.06 -0.08 7.10 -51.93 -0.37 -0.45 16 36 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 37 H 0.08 -0.10 7.96 -51.92 -0.41 -0.52 16 38 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 39 H 0.07 0.00 4.71 -51.93 -0.24 -0.24 16 40 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 41 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 42 H 0.32 -0.11 7.11 -40.82 -0.29 -0.40 16 43 H 0.08 -0.04 8.03 -51.93 -0.42 -0.46 16 44 H 0.07 -0.06 8.10 -51.93 -0.42 -0.48 16 LS Contribution 333.17 15.07 5.02 5.02 Total: 0.00 -2.19 333.17 -7.82 -10.01 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -8.04 Total: -9.60 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 1.55 Total: 2.86 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: 0.67 Total: 0.07 kcal Atomic # 8 Polarization: 0.12 SS G_CDS: -0.27 Total: -0.15 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -6.76 Total: -8.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -2.19 -7.82 -10.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300010802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.177 kcal (2) G-P(sol) polarization free energy of solvation -2.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds