Wall clock time and date at job start Mon Mar 30 2020 07:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29441 * 117.96034 * 2 1 4 4 C 1.50071 * 124.07789 * 180.49337 * 3 2 1 5 5 H 1.08998 * 109.24930 * 222.73350 * 4 3 2 6 6 C 1.53000 * 109.35981 * 103.07609 * 4 3 2 7 7 C 1.53029 * 110.14268 * 342.86776 * 4 3 2 8 8 C 1.53387 * 108.43932 * 49.43988 * 7 4 3 9 9 H 1.09008 * 109.64544 * 52.45433 * 8 7 4 10 10 C 1.52994 * 109.64489 * 172.87712 * 8 7 4 11 11 O 1.42901 * 109.47461 * 179.97438 * 10 8 7 12 12 Si 1.63094 * 114.00523 * 210.00149 * 11 10 8 13 13 C 1.86303 * 109.47202 * 59.99927 * 12 11 10 14 14 C 1.86297 * 109.47319 * 180.02562 * 12 11 10 15 15 C 1.86306 * 109.47031 * 300.00125 * 12 11 10 16 16 C 1.50695 * 109.47307 * 299.99914 * 10 8 7 17 17 N 1.27946 * 120.00250 * 129.99914 * 16 10 8 18 18 Si 1.86798 * 119.99957 * 309.99872 * 16 10 8 19 19 H 1.48506 * 109.47297 * 59.99673 * 18 16 10 20 20 H 1.48503 * 109.47261 * 299.99854 * 18 16 10 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 10 22 22 C 1.50063 * 117.96550 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47406 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46981 * 120.00005 * 1 2 3 25 25 H 1.09003 * 109.47061 * 240.00026 * 1 2 3 26 26 H 1.08001 * 117.96354 * 0.51560 * 3 2 1 27 27 H 1.09000 * 109.46963 * 299.31042 * 6 4 3 28 28 H 1.08996 * 109.46801 * 59.31122 * 6 4 3 29 29 H 1.08996 * 109.46946 * 179.31620 * 6 4 3 30 30 H 1.08994 * 109.64199 * 289.74701 * 7 4 3 31 31 H 1.08999 * 109.81341 * 169.22392 * 7 4 3 32 32 H 1.09005 * 109.46870 * 59.99637 * 10 8 7 33 33 H 1.09004 * 109.46723 * 60.00317 * 13 12 11 34 34 H 1.08995 * 109.47010 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.46969 * 300.00648 * 13 12 11 36 36 H 1.09000 * 109.47267 * 60.00307 * 14 12 11 37 37 H 1.09008 * 109.47224 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47127 * 299.99576 * 14 12 11 39 39 H 1.09004 * 109.46722 * 60.00156 * 15 12 11 40 40 H 1.09000 * 109.47265 * 179.97438 * 15 12 11 41 41 H 1.08998 * 109.47184 * 300.00101 * 15 12 11 42 42 H 0.97001 * 119.99665 * 359.97438 * 17 16 10 43 43 H 1.08995 * 109.35775 * 42.63314 * 22 2 1 44 44 H 1.09003 * 109.35800 * 283.05060 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3033 -0.0107 5 1 3.8881 2.0903 0.6886 6 6 4.0648 1.6877 -1.4188 7 6 4.2795 -0.0074 0.4021 8 6 3.6703 -1.1471 -0.4242 9 1 3.7196 -0.8981 -1.4843 10 6 4.4433 -2.4414 -0.1635 11 8 3.8725 -3.5007 -0.9344 12 14 4.0208 -4.9737 -0.2501 13 6 3.1676 -4.9778 1.4060 14 6 3.2389 -6.2534 -1.3554 15 6 5.8260 -5.3725 -0.0197 16 6 5.8855 -2.2533 -0.5578 17 7 6.8186 -2.5782 0.2551 18 14 6.3110 -1.5459 -2.2334 19 1 5.7242 -0.1877 -2.3609 20 1 5.7603 -2.4248 -3.2962 21 1 7.7869 -1.4622 -2.3752 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3634 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8899 25 1 -0.3633 -0.5138 0.8900 26 1 1.5088 2.0379 0.0086 27 1 3.7880 0.8995 -2.1189 28 1 3.5861 2.6211 -1.7146 29 1 5.1471 1.8162 -1.4257 30 1 4.1061 -0.1903 1.4625 31 1 5.3509 0.0516 0.2110 32 1 4.3859 -2.6918 0.8959 33 1 2.1114 -4.7445 1.2712 34 1 3.2670 -5.9621 1.8635 35 1 3.6254 -4.2291 2.0524 36 1 3.7385 -6.2510 -2.3241 37 1 3.3384 -7.2380 -0.8982 38 1 2.1828 -6.0203 -1.4905 39 1 6.2838 -4.6238 0.6268 40 1 5.9251 -6.3568 0.4381 41 1 6.3252 -5.3701 -0.9886 42 1 6.5976 -2.9452 1.1254 43 1 1.7119 -1.9990 -0.6974 44 1 2.1750 -1.7539 1.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300010802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:08 Heat of formation + Delta-G solvation = -54.913560 kcal Electronic energy + Delta-G solvation = -20362.997890 eV Core-core repulsion = 17631.578121 eV Total energy + Delta-G solvation = -2731.419770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88052 -38.55801 -35.82737 -34.35028 -33.04667 -29.57707 -28.56153 -28.42247 -27.92601 -27.60292 -26.90060 -22.84702 -22.42295 -21.31056 -18.69375 -17.89279 -17.20508 -16.65285 -15.90097 -15.75739 -15.16618 -14.82198 -14.56405 -14.35156 -14.23545 -14.04824 -13.88387 -13.75314 -13.58553 -13.34554 -13.28085 -13.27081 -13.14089 -12.90344 -12.85513 -12.65370 -12.44464 -12.33665 -12.29584 -12.00879 -11.77663 -11.47613 -11.38186 -11.16982 -10.98940 -10.71380 -10.63214 -9.90601 -9.59546 0.67123 1.21252 1.40856 1.47467 1.64504 1.84998 1.87409 1.97816 2.04912 2.44427 3.51568 3.61734 3.78840 3.85861 4.10533 4.22095 4.28715 4.41534 4.49264 4.55577 4.62008 4.66278 4.67029 4.70253 4.71841 4.74159 4.74561 4.77091 4.80737 4.86406 4.90558 4.91657 5.02865 5.11980 5.14220 5.22241 5.25406 5.34164 5.40425 5.47291 5.53335 5.55663 5.61954 5.84308 6.19206 6.78249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C -0.163 4.163 4 C -0.058 4.058 5 H 0.082 0.918 6 C -0.150 4.150 7 C -0.117 4.117 8 C -0.088 4.088 9 H 0.092 0.908 10 C 0.100 3.900 11 O -0.616 6.616 12 Si 1.282 2.718 13 C -0.513 4.513 14 C -0.475 4.475 15 C -0.526 4.526 16 C -0.049 4.049 17 N -0.625 5.625 18 Si 1.046 2.954 19 H -0.213 1.213 20 H -0.244 1.244 21 H -0.271 1.271 22 C -0.074 4.074 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.330 0.670 43 H 0.084 0.916 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 0.635 0.379 2.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.129 4.129 3 C -0.181 4.181 4 C -0.076 4.076 5 H 0.100 0.900 6 C -0.207 4.207 7 C -0.155 4.155 8 C -0.107 4.107 9 H 0.110 0.890 10 C 0.040 3.960 11 O -0.573 6.573 12 Si 1.417 2.583 13 C -0.615 4.615 14 C -0.581 4.581 15 C -0.626 4.626 16 C -0.295 4.295 17 N -0.241 5.241 18 Si 0.860 3.140 19 H -0.135 1.135 20 H -0.168 1.168 21 H -0.195 1.195 22 C -0.111 4.111 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.986 1.147 -0.612 1.631 hybrid contribution -0.854 -1.067 1.608 2.110 sum -1.839 0.080 0.996 2.093 Atomic orbital electron populations 1.20985 0.92138 1.02495 1.02371 1.21019 0.96141 0.95040 1.00690 1.22016 0.95971 0.97260 1.02834 1.19971 0.92250 0.97407 0.98003 0.89975 1.21971 1.01331 1.01633 0.95738 1.21765 0.99962 0.93822 0.99905 1.21396 0.95005 0.92263 1.02071 0.89011 1.21989 0.91018 0.88696 0.94247 1.85416 1.78242 1.33311 1.60367 0.76752 0.64085 0.55291 0.62159 1.27015 1.09156 1.04772 1.20532 1.26386 1.08132 1.12748 1.10866 1.27424 1.24600 1.06011 1.04611 1.32276 0.92889 0.95383 1.08903 1.69548 1.38852 1.07732 1.07980 0.83911 0.79155 0.81249 0.69708 1.13494 1.16754 1.19509 1.20345 0.93634 0.94845 1.02303 0.92078 0.91366 0.91526 0.87911 0.92394 0.92330 0.91854 0.91165 0.90862 0.90342 0.90617 0.90534 0.91409 0.91045 0.90030 0.90544 0.91683 0.90547 0.91644 0.85056 0.89788 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 9.98 71.24 0.71 0.90 16 2 C -0.13 0.02 5.84 -15.10 -0.09 -0.07 16 3 C -0.16 0.00 8.64 27.04 0.23 0.24 16 4 C -0.06 0.07 3.12 -11.73 -0.04 0.04 16 5 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 6 C -0.15 0.22 8.25 71.98 0.59 0.81 16 7 C -0.12 0.22 4.51 30.73 0.14 0.36 16 8 C -0.09 0.12 1.49 -10.66 -0.02 0.10 16 9 H 0.09 -0.09 4.80 -2.38 -0.01 -0.10 16 10 C 0.10 -0.13 1.38 29.84 0.04 -0.09 16 11 O -0.62 0.40 7.64 -148.98 -1.14 -0.73 16 12 Si 1.28 -3.82 12.68 68.60 0.87 -2.95 16 13 C -0.51 1.53 8.56 113.37 0.97 2.50 16 14 C -0.48 0.81 8.65 113.37 0.98 1.79 16 15 C -0.53 0.02 7.98 113.37 0.90 0.93 16 16 C -0.05 -0.04 2.97 88.67 0.26 0.23 16 17 N -0.63 -1.38 11.99 24.11 0.29 -1.09 16 18 Si 1.05 1.04 27.10 68.60 1.86 2.89 16 19 H -0.21 0.50 5.57 99.48 0.55 1.06 16 20 H -0.24 -0.41 7.11 99.48 0.71 0.30 16 21 H -0.27 -1.19 7.11 99.48 0.71 -0.48 16 22 C -0.07 0.10 4.86 29.66 0.14 0.24 16 23 H 0.06 -0.10 7.56 -2.38 -0.02 -0.12 16 24 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.10 -0.04 7.56 -2.91 -0.02 -0.06 16 27 H 0.06 -0.05 6.14 -2.39 -0.01 -0.06 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 -0.14 7.88 -2.39 -0.02 -0.16 16 30 H 0.07 -0.16 8.12 -2.39 -0.02 -0.18 16 31 H 0.07 -0.18 6.43 -2.39 -0.02 -0.19 16 32 H 0.08 -0.33 5.87 -2.38 -0.01 -0.34 16 33 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 34 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.07 -0.23 7.10 -2.39 -0.02 -0.25 16 36 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 37 H 0.08 -0.23 7.96 -2.38 -0.02 -0.25 16 38 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 39 H 0.06 0.02 4.71 -2.39 -0.01 0.00 16 40 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 41 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 42 H 0.33 -0.20 7.11 -92.71 -0.66 -0.86 16 43 H 0.08 -0.12 8.03 -2.39 -0.02 -0.13 16 44 H 0.08 -0.18 8.10 -2.39 -0.02 -0.20 16 Total: 0.00 -4.91 333.17 7.62 2.71 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: 0.90 Total: -3.38 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.84 Total: 7.97 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: 0.29 Total: -1.09 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -1.14 Total: -0.73 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.73 Total: -0.05 kcal Total: -4.91 7.62 2.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300010802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.620 kcal (2) G-P(sol) polarization free energy of solvation -4.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds