Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47084 * 2 1 4 4 C 1.50697 * 109.46870 * 179.97438 * 3 2 1 5 5 N 1.29030 * 124.91297 * 90.02422 * 4 3 2 6 6 C 1.31781 * 117.12292 * 179.97438 * 5 4 3 7 7 C 1.33641 * 114.50025 * 0.02562 * 6 5 4 8 8 C 1.50695 * 126.03591 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47564 * 90.00059 * 8 7 6 10 10 C 1.46895 * 111.00275 * 175.54743 * 9 8 7 11 11 H 1.09000 * 109.47178 * 325.92751 * 10 9 8 12 12 C 1.50708 * 109.46719 * 205.92681 * 10 9 8 13 13 H 1.07995 * 120.00180 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99530 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00332 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99626 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47318 * 89.99931 * 16 14 12 18 18 H 1.48507 * 109.46764 * 209.99750 * 16 14 12 19 19 H 1.48501 * 109.46956 * 329.99557 * 16 14 12 20 20 C 1.53001 * 109.47157 * 85.93078 * 10 9 8 21 21 C 1.52996 * 109.47365 * 59.82524 * 20 10 9 22 22 S 1.70972 * 124.91981 * 270.33885 * 4 3 2 23 23 H 1.08998 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47358 * 300.00433 * 1 2 3 25 25 H 1.09000 * 109.47321 * 60.00288 * 1 2 3 26 26 H 1.09002 * 109.47282 * 240.00116 * 2 1 3 27 27 H 1.09000 * 109.46858 * 119.99447 * 2 1 3 28 28 H 1.08996 * 109.46680 * 59.99592 * 3 2 1 29 29 H 1.09000 * 109.46807 * 300.00027 * 3 2 1 30 30 H 1.08003 * 122.74729 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47588 * 329.99681 * 8 7 6 32 32 H 1.09004 * 109.47111 * 209.99562 * 8 7 6 33 33 H 1.00901 * 110.99745 * 51.58630 * 9 8 7 34 34 H 0.97000 * 119.99748 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47028 * 299.82115 * 20 10 9 36 36 H 1.08999 * 109.46654 * 179.82837 * 20 10 9 37 37 H 1.09000 * 109.47075 * 295.58899 * 21 20 10 38 38 H 1.08998 * 109.46975 * 175.59214 * 21 20 10 39 39 H 1.09004 * 109.47282 * 55.58970 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2859 1.4428 -1.0571 6 6 5.5915 1.4432 -0.8780 7 6 5.9752 1.4428 0.4022 8 6 7.3970 1.4425 0.9015 9 7 7.8592 2.8274 1.0642 10 6 9.2057 2.8677 1.6500 11 1 9.3215 2.0418 2.3517 12 6 9.3989 4.1744 2.3756 13 1 8.6011 4.9018 2.3996 14 6 10.5940 4.4406 3.0097 15 7 11.5650 3.5541 2.9817 16 14 10.8332 6.0599 3.9097 17 1 10.4025 5.9092 5.3229 18 1 12.2675 6.4424 3.8676 19 1 10.0199 7.1154 3.2542 20 6 10.2494 2.7426 0.5382 21 6 10.0841 3.8995 -0.4492 22 16 4.5251 1.4344 1.4029 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 6.2938 1.4439 -1.6985 31 1 8.0348 0.9289 0.1821 32 1 7.4449 0.9284 1.8615 33 1 7.2077 3.3633 1.6179 34 1 12.4058 3.7416 3.4276 35 1 10.1117 1.7962 0.0154 36 1 11.2486 2.7755 0.9726 37 1 9.1146 3.8215 -0.9413 38 1 10.8758 3.8549 -1.1970 39 1 10.1440 4.8465 0.0873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309646472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = 19.945188 kcal Electronic energy + Delta-G solvation = -17859.448482 eV Core-core repulsion = 15120.936651 eV Total energy + Delta-G solvation = -2738.511831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56787 -36.51431 -35.29680 -33.11067 -31.23221 -29.97333 -28.13842 -26.12778 -24.40523 -23.24677 -22.86766 -21.76030 -19.29621 -19.01034 -17.85324 -16.50915 -15.31646 -15.18461 -14.88220 -14.56526 -14.09152 -13.98630 -13.62492 -13.56418 -13.01670 -12.74765 -12.39302 -12.18609 -11.91105 -11.81240 -11.49757 -11.46404 -11.04449 -10.96584 -10.93568 -10.77273 -10.43232 -10.12212 -9.81755 -9.48210 -9.39779 -9.08695 -8.84779 -8.57042 -8.49211 -7.34238 -6.05874 -4.11691 0.88223 1.49231 1.93238 3.02054 3.26981 3.34303 3.37967 4.16058 4.37476 4.73622 4.78773 4.93033 5.16961 5.25227 5.30789 5.40908 5.42196 5.51027 5.54282 5.60968 5.79834 5.90351 6.02513 6.09801 6.18476 6.40052 6.51477 6.65570 6.82631 7.20101 7.23411 7.44251 7.70797 7.74113 7.79177 7.89930 8.19795 8.31027 8.57274 8.96174 9.53297 10.99995 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.003769 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.681281 B = 7427.830193 C = 7851.289316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.040 4.040 4 C 0.034 3.966 5 N -0.471 5.471 6 C 0.039 3.961 7 C -0.192 4.192 8 C 0.133 3.867 9 N -0.678 5.678 10 C 0.216 3.784 11 H 0.002 0.998 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.894 3.106 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.103 4.103 21 C -0.120 4.120 22 S 0.107 5.893 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.175 0.825 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.332 0.668 34 H 0.261 0.739 35 H 0.010 0.990 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.502 -6.443 -4.094 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.081 4.081 4 C -0.244 4.244 5 N -0.185 5.185 6 C -0.112 4.112 7 C -0.313 4.313 8 C 0.001 3.999 9 N -0.309 5.309 10 C 0.109 3.891 11 H 0.020 0.980 12 C -0.553 4.553 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.142 4.142 21 C -0.177 4.177 22 S 0.362 5.638 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.192 0.808 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.523 -6.420 -4.128 18.200 hybrid contribution 0.775 0.657 0.688 1.227 sum -15.747 -5.763 -3.440 17.118 Atomic orbital electron populations 1.21764 0.95152 1.01912 1.02021 1.21529 0.96006 0.95372 1.02827 1.20253 0.85390 0.98472 1.03996 1.26877 1.01073 1.05234 0.91259 1.66244 1.05063 1.15549 1.31679 1.21642 0.90604 1.02844 0.96099 1.26170 0.99862 1.09336 0.95934 1.20371 0.86599 0.93803 0.99110 1.60849 1.05924 1.07614 1.56546 1.19193 0.82784 0.96385 0.90787 0.98034 1.21163 0.99849 1.02136 1.32121 0.92267 1.24879 0.95861 0.96843 0.96189 1.69879 1.04808 1.34522 1.43468 0.86566 0.77371 0.83949 0.79964 1.20772 1.21190 1.19815 1.21440 1.02580 0.94259 0.95871 1.21450 0.98221 1.00573 0.97492 1.83973 0.98414 1.68723 1.12736 0.92471 0.92535 0.92474 0.91325 0.91726 0.89903 0.89069 0.80821 0.89614 0.94844 0.85107 0.92887 0.97133 0.89421 0.93969 0.96712 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.04 -0.39 5.80 -27.88 -0.16 -0.55 16 4 C 0.03 0.44 6.64 -13.46 -0.09 0.35 16 5 N -0.47 -7.22 10.54 -11.86 -0.13 -7.35 16 6 C 0.04 0.60 11.25 -19.18 -0.22 0.39 16 7 C -0.19 -3.03 6.06 -35.92 -0.22 -3.25 16 8 C 0.13 2.35 6.07 -4.98 -0.03 2.32 16 9 N -0.68 -14.01 5.64 -109.22 -0.62 -14.62 16 10 C 0.22 5.24 2.30 -68.86 -0.16 5.08 16 11 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 12 C -0.51 -13.59 7.26 -34.44 -0.25 -13.84 16 13 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.76 11.32 55.43 0.63 -24.14 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.10 -2.45 5.59 -26.73 -0.15 -2.60 16 21 C -0.12 -2.68 9.52 37.16 0.35 -2.32 16 22 S 0.11 1.47 23.18 -107.50 -2.49 -1.03 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 31 H 0.09 1.49 7.61 -51.93 -0.40 1.10 16 32 H 0.03 0.60 7.94 -51.93 -0.41 0.19 16 33 H 0.33 6.90 8.13 -39.29 -0.32 6.59 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.01 0.22 7.60 -51.93 -0.39 -0.17 16 36 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 37 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 1.37 7.07 -51.93 -0.37 1.01 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -28.00 332.16 -9.77 -37.77 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.35 Total: 3.02 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.80 Total: -14.58 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.11 Total: -46.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.00 -9.77 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309646472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds