Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47084 * 2 1 4 4 C 1.50697 * 109.46870 * 179.97438 * 3 2 1 5 5 N 1.29030 * 124.91297 * 90.02422 * 4 3 2 6 6 C 1.31781 * 117.12292 * 179.97438 * 5 4 3 7 7 C 1.33641 * 114.50025 * 0.02562 * 6 5 4 8 8 C 1.50695 * 126.03591 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47564 * 90.00059 * 8 7 6 10 10 C 1.46895 * 111.00275 * 175.54743 * 9 8 7 11 11 H 1.09000 * 109.47178 * 325.92751 * 10 9 8 12 12 C 1.50708 * 109.46719 * 205.92681 * 10 9 8 13 13 H 1.07995 * 120.00180 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99530 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00332 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99626 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47318 * 89.99931 * 16 14 12 18 18 H 1.48507 * 109.46764 * 209.99750 * 16 14 12 19 19 H 1.48501 * 109.46956 * 329.99557 * 16 14 12 20 20 C 1.53001 * 109.47157 * 85.93078 * 10 9 8 21 21 C 1.52996 * 109.47365 * 59.82524 * 20 10 9 22 22 S 1.70972 * 124.91981 * 270.33885 * 4 3 2 23 23 H 1.08998 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47358 * 300.00433 * 1 2 3 25 25 H 1.09000 * 109.47321 * 60.00288 * 1 2 3 26 26 H 1.09002 * 109.47282 * 240.00116 * 2 1 3 27 27 H 1.09000 * 109.46858 * 119.99447 * 2 1 3 28 28 H 1.08996 * 109.46680 * 59.99592 * 3 2 1 29 29 H 1.09000 * 109.46807 * 300.00027 * 3 2 1 30 30 H 1.08003 * 122.74729 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47588 * 329.99681 * 8 7 6 32 32 H 1.09004 * 109.47111 * 209.99562 * 8 7 6 33 33 H 1.00901 * 110.99745 * 51.58630 * 9 8 7 34 34 H 0.97000 * 119.99748 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47028 * 299.82115 * 20 10 9 36 36 H 1.08999 * 109.46654 * 179.82837 * 20 10 9 37 37 H 1.09000 * 109.47075 * 295.58899 * 21 20 10 38 38 H 1.08998 * 109.46975 * 175.59214 * 21 20 10 39 39 H 1.09004 * 109.47282 * 55.58970 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2859 1.4428 -1.0571 6 6 5.5915 1.4432 -0.8780 7 6 5.9752 1.4428 0.4022 8 6 7.3970 1.4425 0.9015 9 7 7.8592 2.8274 1.0642 10 6 9.2057 2.8677 1.6500 11 1 9.3215 2.0418 2.3517 12 6 9.3989 4.1744 2.3756 13 1 8.6011 4.9018 2.3996 14 6 10.5940 4.4406 3.0097 15 7 11.5650 3.5541 2.9817 16 14 10.8332 6.0599 3.9097 17 1 10.4025 5.9092 5.3229 18 1 12.2675 6.4424 3.8676 19 1 10.0199 7.1154 3.2542 20 6 10.2494 2.7426 0.5382 21 6 10.0841 3.8995 -0.4492 22 16 4.5251 1.4344 1.4029 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 6.2938 1.4439 -1.6985 31 1 8.0348 0.9289 0.1821 32 1 7.4449 0.9284 1.8615 33 1 7.2077 3.3633 1.6179 34 1 12.4058 3.7416 3.4276 35 1 10.1117 1.7962 0.0154 36 1 11.2486 2.7755 0.9726 37 1 9.1146 3.8215 -0.9413 38 1 10.8758 3.8549 -1.1970 39 1 10.1440 4.8465 0.0873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309646472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = 4.082038 kcal Electronic energy + Delta-G solvation = -17860.136360 eV Core-core repulsion = 15120.936651 eV Total energy + Delta-G solvation = -2739.199709 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71521 -38.23515 -36.15882 -34.80127 -33.00542 -31.28523 -29.35262 -27.82266 -25.69952 -25.00353 -24.20578 -22.49826 -21.01731 -20.35129 -18.99019 -18.36884 -16.98079 -16.42818 -15.93804 -15.80132 -15.65170 -15.22784 -15.05332 -14.96082 -14.33836 -14.07426 -13.83009 -13.64727 -13.21233 -12.89430 -12.80885 -12.71336 -12.48965 -12.42864 -12.28890 -12.11654 -11.89135 -11.66897 -11.59829 -11.33484 -10.82961 -10.60809 -10.52686 -10.23683 -9.72901 -9.07315 -8.10902 -6.23144 -0.25860 0.37311 0.79541 1.41166 1.43432 1.52820 1.85391 2.42153 3.18092 3.18670 3.68882 3.94391 3.99246 4.11612 4.16073 4.23184 4.58155 4.61673 4.69228 4.71304 4.78778 4.80165 4.87923 4.95426 4.96226 5.16302 5.25870 5.29161 5.31889 5.38096 5.44914 5.54480 5.69979 5.80503 5.87346 6.26821 6.42205 6.71858 6.76880 6.97042 7.45538 8.94070 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.003769 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.681281 B = 7427.830193 C = 7851.289316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.043 4.043 4 C 0.046 3.954 5 N -0.496 5.496 6 C 0.041 3.959 7 C -0.219 4.219 8 C 0.141 3.859 9 N -0.673 5.673 10 C 0.222 3.778 11 H -0.030 1.030 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.099 4.099 21 C -0.108 4.108 22 S 0.130 5.870 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.180 0.820 31 H 0.086 0.914 32 H 0.028 0.972 33 H 0.330 0.670 34 H 0.261 0.739 35 H 0.024 0.976 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 -6.042 -4.290 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.083 4.083 4 C -0.232 4.232 5 N -0.210 5.210 6 C -0.110 4.110 7 C -0.340 4.340 8 C 0.010 3.990 9 N -0.304 5.304 10 C 0.114 3.886 11 H -0.013 1.013 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.554 5.554 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.138 4.138 21 C -0.165 4.165 22 S 0.384 5.616 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.197 0.803 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.373 -6.024 -4.322 19.812 hybrid contribution 1.241 0.472 0.731 1.516 sum -17.132 -5.552 -3.591 18.364 Atomic orbital electron populations 1.21741 0.93450 1.02588 1.02709 1.21499 0.97414 0.94218 1.02239 1.20492 0.82883 0.99656 1.05300 1.27578 1.02525 1.02459 0.90633 1.66324 1.04967 1.17255 1.32490 1.21801 0.91110 1.01857 0.96197 1.25904 0.99604 1.11852 0.96679 1.20213 0.88076 0.91830 0.98901 1.60755 1.04442 1.09661 1.55556 1.18972 0.84898 0.94365 0.90344 1.01296 1.21425 0.99808 1.02803 1.32354 0.92587 1.25595 0.95695 0.99765 0.96986 1.70008 1.05127 1.36083 1.44207 0.85628 0.77190 0.80367 0.78896 1.20264 1.21048 1.19372 1.21326 1.00793 0.95660 0.96040 1.21308 0.99421 0.98584 0.97195 1.83868 0.97158 1.68264 1.12261 0.91855 0.91583 0.92066 0.92526 0.91765 0.87879 0.88433 0.80324 0.89567 0.95413 0.85281 0.92941 0.95780 0.92244 0.93073 0.94827 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.11 -1.70 5.92 30.60 0.18 -1.52 16 3 C -0.04 -0.72 5.80 29.85 0.17 -0.55 16 4 C 0.05 1.13 6.64 88.52 0.59 1.72 16 5 N -0.50 -14.55 10.54 -191.45 -2.02 -16.57 16 6 C 0.04 1.25 11.25 83.66 0.94 2.19 16 7 C -0.22 -6.78 6.06 24.64 0.15 -6.64 16 8 C 0.14 4.98 6.07 85.56 0.52 5.50 16 9 N -0.67 -27.87 5.64 -499.46 -2.81 -30.68 16 10 C 0.22 10.97 2.30 44.17 0.10 11.07 16 11 H -0.03 -1.67 7.71 -2.39 -0.02 -1.69 16 12 C -0.53 -28.02 7.26 25.60 0.19 -27.83 16 13 H 0.06 2.96 7.60 -2.91 -0.02 2.94 16 14 C 0.02 1.03 5.30 84.65 0.45 1.48 16 15 N -0.91 -51.78 11.32 21.45 0.24 -51.53 16 16 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 C -0.10 -4.77 5.59 30.59 0.17 -4.60 16 21 C -0.11 -4.73 9.52 71.98 0.69 -4.04 16 22 S 0.13 3.36 23.18 -56.49 -1.31 2.05 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.18 5.04 8.06 -2.91 -0.02 5.02 16 31 H 0.09 3.00 7.61 -2.39 -0.02 2.98 16 32 H 0.03 1.01 7.94 -2.38 -0.02 0.99 16 33 H 0.33 13.74 8.13 -89.69 -0.73 13.01 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.02 1.05 7.60 -2.39 -0.02 1.03 16 36 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 37 H 0.05 2.12 7.74 -2.39 -0.02 2.10 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 1.69 7.07 -2.39 -0.02 1.67 16 Total: -1.00 -59.24 332.16 1.28 -57.96 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.30 Total: 17.81 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.86 Total: -24.05 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -4.59 Total: -98.78 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -59.24 1.28 -57.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309646472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.046 kcal (2) G-P(sol) polarization free energy of solvation -59.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds