Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.50701 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.29025 * 124.91563 * 90.01886 * 4 3 2 6 6 C 1.31784 * 117.12539 * 180.02562 * 5 4 3 7 7 C 1.33639 * 114.49918 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.03770 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47130 * 89.99935 * 8 7 6 10 10 C 1.46895 * 110.99914 * 174.89717 * 9 8 7 11 11 H 1.09006 * 109.47319 * 33.75318 * 10 9 8 12 12 C 1.50708 * 109.47375 * 153.75003 * 10 9 8 13 13 H 1.08003 * 119.99280 * 0.02562 * 12 10 9 14 14 C 1.37874 * 120.00238 * 180.02562 * 12 10 9 15 15 N 1.31516 * 120.00142 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99737 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47178 * 90.00450 * 16 14 12 18 18 H 1.48504 * 109.47127 * 210.00048 * 16 14 12 19 19 H 1.48499 * 109.47417 * 330.00418 * 16 14 12 20 20 C 1.53000 * 109.47917 * 273.75291 * 10 9 8 21 21 C 1.53000 * 109.46715 * 297.97317 * 20 10 9 22 22 S 1.70977 * 124.91744 * 270.34132 * 4 3 2 23 23 H 1.08998 * 109.47220 * 60.00650 * 1 2 3 24 24 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47227 * 299.99814 * 1 2 3 26 26 H 1.08996 * 109.47131 * 239.99665 * 2 1 3 27 27 H 1.09008 * 109.47268 * 119.99898 * 2 1 3 28 28 H 1.08999 * 109.46957 * 60.00020 * 3 2 1 29 29 H 1.08992 * 109.47006 * 299.99682 * 3 2 1 30 30 H 1.07998 * 122.74934 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46871 * 329.99935 * 8 7 6 32 32 H 1.09001 * 109.47150 * 210.00396 * 8 7 6 33 33 H 1.00894 * 111.00371 * 298.85985 * 9 8 7 34 34 H 0.97001 * 119.99759 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47947 * 177.96861 * 20 10 9 36 36 H 1.09004 * 109.47021 * 57.96570 * 20 10 9 37 37 H 1.08995 * 109.47513 * 54.44494 * 21 20 10 38 38 H 1.09000 * 109.47032 * 294.44203 * 21 20 10 39 39 H 1.09000 * 109.46903 * 174.44630 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2859 1.4428 -1.0570 6 6 5.5915 1.4423 -0.8779 7 6 5.9752 1.4411 0.4023 8 6 7.3971 1.4409 0.9017 9 7 7.8588 2.8257 1.0653 10 6 9.1990 2.8663 1.6654 11 1 9.7757 2.0062 1.3250 12 6 9.8973 4.1355 1.2497 13 1 9.3954 4.8415 0.6046 14 6 11.1768 4.3953 1.6929 15 7 11.7881 3.5354 2.4780 16 14 12.0419 5.9689 1.1782 17 1 11.7496 7.0399 2.1645 18 1 13.5071 5.7330 1.1234 19 1 11.5570 6.3847 -0.1623 20 6 9.0768 2.8274 3.1900 21 6 8.3108 4.0611 3.6718 22 16 4.5250 1.4345 1.4030 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.2938 1.4429 -1.6983 31 1 8.0349 0.9279 0.1818 32 1 7.4450 0.9260 1.8612 33 1 7.8414 3.3191 0.1854 34 1 12.6884 3.7180 2.7895 35 1 10.0720 2.8211 3.6343 36 1 8.5399 1.9269 3.4885 37 1 7.3542 4.1205 3.1528 38 1 8.8950 4.9568 3.4607 39 1 8.1377 3.9849 4.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309646473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = 19.788562 kcal Electronic energy + Delta-G solvation = -17880.166057 eV Core-core repulsion = 15141.647434 eV Total energy + Delta-G solvation = -2738.518623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54744 -36.51149 -35.28030 -33.10763 -31.22677 -29.94716 -28.13079 -26.12307 -24.42210 -23.25766 -22.87400 -21.73014 -19.21281 -18.95608 -17.93173 -16.43233 -15.26996 -15.09525 -14.98129 -14.62011 -14.20803 -13.99985 -13.61459 -13.47871 -12.96532 -12.69065 -12.38716 -12.18710 -11.93630 -11.73165 -11.51754 -11.46851 -11.01190 -10.95040 -10.92151 -10.77681 -10.43470 -10.15275 -9.81335 -9.42725 -9.39448 -9.02731 -8.82971 -8.58217 -8.48499 -7.35056 -6.05820 -4.11337 0.91808 1.55493 2.01293 3.01896 3.27665 3.34578 3.37440 4.18669 4.37647 4.75464 4.80705 4.94340 5.15437 5.25662 5.33101 5.41481 5.43903 5.52364 5.55994 5.63395 5.80895 5.91915 6.03294 6.04347 6.14427 6.39650 6.49185 6.67511 6.81659 7.19387 7.22463 7.44805 7.69299 7.74697 7.78817 7.91679 8.19189 8.30634 8.57708 8.96573 9.53623 11.00253 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.003660 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.706035 B = 7647.797749 C = 7871.930188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.040 4.040 4 C 0.024 3.976 5 N -0.471 5.471 6 C 0.021 3.979 7 C -0.185 4.185 8 C 0.131 3.869 9 N -0.680 5.680 10 C 0.216 3.784 11 H 0.002 0.998 12 C -0.513 4.513 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.102 4.102 21 C -0.119 4.119 22 S 0.134 5.866 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.334 0.666 34 H 0.261 0.739 35 H 0.086 0.914 36 H 0.009 0.991 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.084 -6.411 -2.486 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.253 4.253 5 N -0.186 5.186 6 C -0.130 4.130 7 C -0.307 4.307 8 C -0.001 4.001 9 N -0.312 5.312 10 C 0.109 3.891 11 H 0.020 0.980 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.140 4.140 21 C -0.177 4.177 22 S 0.388 5.612 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.188 0.812 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -17.673 -6.351 -1.234 18.820 hybrid contribution 1.836 0.615 -1.697 2.574 sum -15.837 -5.736 -2.931 17.097 Atomic orbital electron populations 1.21764 0.95185 1.01888 1.02011 1.21527 0.95979 0.95429 1.02803 1.20235 0.85469 0.98404 1.03938 1.26896 1.01125 1.05601 0.91701 1.66211 1.04894 1.15583 1.31879 1.21632 0.90950 1.04424 0.95957 1.26156 1.00417 1.08409 0.95697 1.20300 0.86325 0.93727 0.99779 1.60728 1.30559 1.09816 1.30064 1.19156 0.81997 0.96355 0.91575 0.97991 1.21157 0.98965 1.04933 1.30155 0.92259 1.24873 0.97210 0.96713 0.94972 1.69884 1.13461 1.35372 1.34001 0.86564 0.78639 0.83591 0.79023 1.20609 1.21303 1.19952 1.21436 1.00407 0.94220 0.97983 1.21438 1.00183 0.99863 0.96183 1.83949 0.97564 1.67632 1.12034 0.92501 0.92493 0.92525 0.91373 0.91716 0.89916 0.89177 0.81214 0.93842 0.90472 0.84838 0.92905 0.89539 0.97232 0.93488 0.92910 0.96795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 3 C -0.04 -0.39 5.80 -27.88 -0.16 -0.55 16 4 C 0.02 0.33 6.64 -13.46 -0.09 0.24 16 5 N -0.47 -7.25 10.54 -11.86 -0.13 -7.37 16 6 C 0.02 0.33 11.25 -19.18 -0.22 0.11 16 7 C -0.18 -2.93 6.15 -35.92 -0.22 -3.15 16 8 C 0.13 2.29 5.98 -4.98 -0.03 2.26 16 9 N -0.68 -13.94 5.50 -109.22 -0.60 -14.54 16 10 C 0.22 5.23 2.30 -68.86 -0.16 5.07 16 11 H 0.00 0.06 7.84 -51.93 -0.41 -0.34 16 12 C -0.51 -13.52 7.34 -34.44 -0.25 -13.77 16 13 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -24.73 11.34 55.43 0.63 -24.10 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 C -0.10 -2.42 5.58 -26.73 -0.15 -2.57 16 21 C -0.12 -2.67 9.46 37.16 0.35 -2.32 16 22 S 0.13 1.86 23.18 -107.50 -2.49 -0.63 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.38 7.40 -51.93 -0.38 0.99 16 33 H 0.33 6.84 8.24 -39.29 -0.32 6.52 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 2.29 6.13 -51.93 -0.32 1.97 16 36 H 0.01 0.20 7.43 -51.93 -0.39 -0.18 16 37 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 38 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -28.03 332.20 -9.77 -37.80 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.35 Total: 2.77 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.81 Total: -14.87 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.10 Total: -46.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.49 Total: -0.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.03 -9.77 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309646473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.588 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds