Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.50701 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.29025 * 124.91563 * 90.01886 * 4 3 2 6 6 C 1.31784 * 117.12539 * 180.02562 * 5 4 3 7 7 C 1.33639 * 114.49918 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.03770 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47130 * 89.99935 * 8 7 6 10 10 C 1.46895 * 110.99914 * 174.89717 * 9 8 7 11 11 H 1.09006 * 109.47319 * 33.75318 * 10 9 8 12 12 C 1.50708 * 109.47375 * 153.75003 * 10 9 8 13 13 H 1.08003 * 119.99280 * 0.02562 * 12 10 9 14 14 C 1.37874 * 120.00238 * 180.02562 * 12 10 9 15 15 N 1.31516 * 120.00142 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99737 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47178 * 90.00450 * 16 14 12 18 18 H 1.48504 * 109.47127 * 210.00048 * 16 14 12 19 19 H 1.48499 * 109.47417 * 330.00418 * 16 14 12 20 20 C 1.53000 * 109.47917 * 273.75291 * 10 9 8 21 21 C 1.53000 * 109.46715 * 297.97317 * 20 10 9 22 22 S 1.70977 * 124.91744 * 270.34132 * 4 3 2 23 23 H 1.08998 * 109.47220 * 60.00650 * 1 2 3 24 24 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47227 * 299.99814 * 1 2 3 26 26 H 1.08996 * 109.47131 * 239.99665 * 2 1 3 27 27 H 1.09008 * 109.47268 * 119.99898 * 2 1 3 28 28 H 1.08999 * 109.46957 * 60.00020 * 3 2 1 29 29 H 1.08992 * 109.47006 * 299.99682 * 3 2 1 30 30 H 1.07998 * 122.74934 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46871 * 329.99935 * 8 7 6 32 32 H 1.09001 * 109.47150 * 210.00396 * 8 7 6 33 33 H 1.00894 * 111.00371 * 298.85985 * 9 8 7 34 34 H 0.97001 * 119.99759 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47947 * 177.96861 * 20 10 9 36 36 H 1.09004 * 109.47021 * 57.96570 * 20 10 9 37 37 H 1.08995 * 109.47513 * 54.44494 * 21 20 10 38 38 H 1.09000 * 109.47032 * 294.44203 * 21 20 10 39 39 H 1.09000 * 109.46903 * 174.44630 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2859 1.4428 -1.0570 6 6 5.5915 1.4423 -0.8779 7 6 5.9752 1.4411 0.4023 8 6 7.3971 1.4409 0.9017 9 7 7.8588 2.8257 1.0653 10 6 9.1990 2.8663 1.6654 11 1 9.7757 2.0062 1.3250 12 6 9.8973 4.1355 1.2497 13 1 9.3954 4.8415 0.6046 14 6 11.1768 4.3953 1.6929 15 7 11.7881 3.5354 2.4780 16 14 12.0419 5.9689 1.1782 17 1 11.7496 7.0399 2.1645 18 1 13.5071 5.7330 1.1234 19 1 11.5570 6.3847 -0.1623 20 6 9.0768 2.8274 3.1900 21 6 8.3108 4.0611 3.6718 22 16 4.5250 1.4345 1.4030 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.2938 1.4429 -1.6983 31 1 8.0349 0.9279 0.1818 32 1 7.4450 0.9260 1.8612 33 1 7.8414 3.3191 0.1854 34 1 12.6884 3.7180 2.7895 35 1 10.0720 2.8211 3.6343 36 1 8.5399 1.9269 3.4885 37 1 7.3542 4.1205 3.1528 38 1 8.8950 4.9568 3.4607 39 1 8.1377 3.9849 4.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309646473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = 3.978357 kcal Electronic energy + Delta-G solvation = -17880.851639 eV Core-core repulsion = 15141.647434 eV Total energy + Delta-G solvation = -2739.204205 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69776 -38.22557 -36.14801 -34.79030 -32.99880 -31.26170 -29.34769 -27.80937 -25.70641 -25.05269 -24.17353 -22.47609 -21.00254 -20.20913 -19.12528 -18.28824 -16.92275 -16.35528 -16.01821 -15.85108 -15.77498 -15.16579 -15.03747 -14.94760 -14.26859 -14.07635 -13.76432 -13.61210 -13.26051 -12.90721 -12.79969 -12.66718 -12.49360 -12.42739 -12.27462 -12.09159 -11.93707 -11.66399 -11.58906 -11.33201 -10.82587 -10.55130 -10.53764 -10.16686 -9.72394 -9.06420 -8.10622 -6.22310 -0.22790 0.43141 0.86777 1.41548 1.43446 1.52085 1.85493 2.42316 3.18760 3.20893 3.66609 3.99878 4.03449 4.12864 4.16343 4.23570 4.58765 4.61406 4.64264 4.70506 4.79402 4.81531 4.85546 4.94128 4.97292 5.16321 5.26721 5.28675 5.32410 5.37401 5.45739 5.54883 5.70597 5.79880 5.87458 6.26190 6.43321 6.73255 6.78559 6.98785 7.46301 8.94556 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.003660 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.706035 B = 7647.797749 C = 7871.930188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.042 4.042 4 C 0.037 3.963 5 N -0.497 5.497 6 C 0.025 3.975 7 C -0.212 4.212 8 C 0.139 3.861 9 N -0.676 5.676 10 C 0.223 3.777 11 H -0.029 1.029 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.269 1.269 20 C -0.098 4.098 21 C -0.107 4.107 22 S 0.152 5.848 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.178 0.822 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.334 0.666 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 -6.022 -2.525 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.083 4.083 4 C -0.241 4.241 5 N -0.211 5.211 6 C -0.127 4.127 7 C -0.334 4.334 8 C 0.007 3.993 9 N -0.307 5.307 10 C 0.115 3.885 11 H -0.012 1.012 12 C -0.562 4.562 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.137 4.137 21 C -0.164 4.164 22 S 0.407 5.593 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.195 0.805 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.596 -5.966 -1.272 20.523 hybrid contribution 2.323 0.435 -1.702 2.912 sum -17.273 -5.530 -2.973 18.379 Atomic orbital electron populations 1.21741 0.93472 1.02577 1.02695 1.21497 0.97395 0.94252 1.02225 1.20472 0.82984 0.99610 1.05209 1.27585 1.02571 1.02872 0.91034 1.66295 1.04875 1.17268 1.32675 1.21821 0.91412 1.03305 0.96117 1.25901 1.00109 1.10931 0.96428 1.20149 0.87608 0.91824 0.99689 1.60637 1.28125 1.11890 1.30028 1.18931 0.83235 0.94278 0.92072 1.01159 1.21417 0.99352 1.05535 1.29921 0.92574 1.25577 0.97971 0.99398 0.95056 1.70010 1.13658 1.36875 1.34915 0.85641 0.77500 0.80220 0.78780 1.20321 1.21145 1.19396 1.21317 0.99247 0.95580 0.97532 1.21297 0.99588 0.97937 0.97615 1.83831 0.96480 1.67280 1.11699 0.92126 0.91855 0.91548 0.92611 0.91697 0.87900 0.88599 0.80494 0.93833 0.90912 0.84902 0.92980 0.92333 0.95956 0.92934 0.95077 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 3 C -0.04 -0.72 5.80 29.85 0.17 -0.55 16 4 C 0.04 0.92 6.64 88.52 0.59 1.51 16 5 N -0.50 -14.63 10.54 -191.45 -2.02 -16.65 16 6 C 0.02 0.74 11.25 83.66 0.94 1.69 16 7 C -0.21 -6.55 6.15 24.64 0.15 -6.40 16 8 C 0.14 4.85 5.98 85.56 0.51 5.37 16 9 N -0.68 -27.68 5.50 -499.46 -2.74 -30.42 16 10 C 0.22 10.92 2.30 44.17 0.10 11.02 16 11 H -0.03 -1.59 7.84 -2.38 -0.02 -1.60 16 12 C -0.52 -27.79 7.34 25.60 0.19 -27.60 16 13 H 0.06 2.96 7.60 -2.91 -0.02 2.93 16 14 C 0.02 1.05 5.30 84.65 0.45 1.50 16 15 N -0.92 -51.70 11.34 21.45 0.24 -51.46 16 16 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.10 -4.68 5.58 30.59 0.17 -4.51 16 21 C -0.11 -4.70 9.46 71.98 0.68 -4.02 16 22 S 0.15 3.99 23.18 -56.49 -1.31 2.68 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.18 4.84 8.06 -2.91 -0.02 4.82 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 2.58 7.40 -2.39 -0.02 2.57 16 33 H 0.33 13.67 8.24 -89.70 -0.74 12.93 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.06 3.14 6.13 -2.39 -0.01 3.13 16 36 H 0.02 0.97 7.43 -2.38 -0.02 0.96 16 37 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 38 H 0.03 1.47 7.37 -2.39 -0.02 1.45 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -59.16 332.20 1.33 -57.83 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.29 Total: 17.35 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.85 Total: -24.40 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.52 Total: -98.53 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -59.16 1.33 -57.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309646473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.806 kcal (2) G-P(sol) polarization free energy of solvation -59.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds